JBC DNA damage antibodies

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Periodate Oxidation of Pseudouridine 5'-Phosphate and Spectral Characterization of the Products

Achilles Dugaiczyk 1 and John J. Eiler 1

From the 1 From the Departmento de Quimica, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, México 14, D.F. (Apartado Postal 14–740), México, and the Department of Biochemistry and Biophysics, University of California, San Francisco Medical Center, San Francisco, California 94122

Under the conditions for oxidative degradation, with a 2-fold molar excess of periodate and cyclohexylamine at room temperature, psgrMP is degraded to inorganic phosphate but fails to release the base. In this latter respect, the parent pseudouridine behaves similarly. Under more drastic conditions, with a prolonged treatment at 45° and a 6-fold molar excess of periodate and cyclohexylamine, psgrMP is degraded to inorganic phosphate and a mixture of 5-formyluracil and 5-carboxyuracil.

The apparent pKa values of 5-formyluracil, calculated from ultraviolet absorption spectra at various pH values, are 6.8 and >11.2. The same constants of 5-carboxyuracil are 4.3,9.15, and >13.2. Analysis of the spectral data shows that in both of these 5-substituted uracil derivatives anion formation involves loss of a proton from N-1 rather than from N-3 of the uracil ring.

Submitted on November 12, 1968


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