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J. Biol. Chem., Vol. 265, Issue 12, 6532-6535, 04, 1990
A ubiquitin-protein ligase specific for type III protein substrates
H Heller and A Hershko
Unit of Biochemistry, Faculty of Medicine, Technion-Israel Institute of Technology, Haifa.
A previously studied species of ubiquitin-protein ligase contains specific
sites for the binding of basic (Type I) and bulky hydrophobic (Type II)
NH2-terminal amino acid residues of protein substrates. We now describe
another enzyme that ligates ubiquitin specifically to proteins that have
NH2-terminal residues other than the above two categories (Type III
substrates). The new species of ligase, that we call E3 beta, is separable
from the formerly described ligase (termed E3 alpha) by affinity
chromatography on protein substrate columns. E3 beta was partially purified
from extracts of rabbit reticulocytes and was shown to be required for the
breakdown of Type III proteins. Apart from its different substrate
specificity, it resembles E3 alpha in some physical properties, in a
requirement for ubiquitin carrier protein (E2) for conjugate formation, and
in its action to ligate multiple ubiquitin units to the substrate protein.
The denatured derivative of bovine pancreatic ribonuclease is a specific
substrate for E3 alpha, while that of ribonuclease S-protein is a good
substrate for E3 beta. Since S-protein is formed by the removal from
ribonuclease of NH2- terminal S-peptide, it is suggested that E3 beta
interacts with an NH2- terminal determinant exposed in ribonuclease
S-protein.

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Copyright © 1990 by the American Society for Biochemistry and Molecular Biology.
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