J. Biol. Chem., Vol. 265, Issue 13, 7687-7692, May, 1990
Structural organization of the rat cytochrome c oxidase subunit IV gene
M Yamada, N Amuro, Y Goto and T Okazaki
Department of Biochemistry, Nippon Medical School, Tokyo, Japan.
We have isolated two overlapping clones covering the entire length of the
gene of nuclear-encoded sub-unit IV of cytochrome c oxidase (COXIV) from a
rat genomic library in Charon 4A and determined the structural organization
of the gene. The gene spans approximately 7.0 kilobases and contains five
exons interrupted by four introns. Of these exons, exon 2 codes for a whole
length of the presequence of the rat COXIV precursor protein, while exons 3
to 5 encode three distinct structural domains of the mature protein. The
5'-flanking region of the gene lacks conventional TATA and CAAT boxes, but
has a high G + C content and contains two putative binding sites for
transcription factor SP1 and a sequence resembling the AP-4 responsive
element. These results indicate that the promoter region of the rat COXIV
gene possesses characteristic features common in housekeeping genes. The
chloramphenicol acetyltransferase assay performed by constructing an
improved phagemid, pBlueCAT3, revealed that a 773-base pair DNA fragment
immediately preceding the cap site has a strong promoter activity. An
octanucleotide sequence, -TTCTTGGT-, which is very close to the yeast
HAP2/HAP3 responsive element, is located in the 5'-upstream region of the
present gene.