J. Biol. Chem., Vol. 265, Issue 17, 9793-9799, Jun, 1990
Complete amino acid sequence of the cytochrome subunit and amino- terminal sequence of the flavin subunit of flavocytochrome c (sulfide dehydrogenase) from Chlorobium thiosulfatophilum
J Van Beeumen, S Van Bun, TE Meyer, RG Bartsch and MA Cusanovich
Laboratorium voor Microbiologie, Rijksuniversiteit Gent, Belgium.
The complete amino acid sequence of the 86-residue heme subunit of
flavocytochrome c (sulfide dehydrogenase) from the green phototrophic
bacterium Chlorobium thiosulfatophilum strain Tassajara has been determined
as follows: APEQSKSIPRGEILSLSCAGCHGTDGKSESIIPTIYGRSAEYIESALLDFKSGA-
RPSTVMGRHAKGYSDEEIHQIAEYFGSLSTMNN. The subunit has a single heme- binding
site near the N terminus, consisting of a pair of cysteine residues at
positions 18 and 21. The out-of-plane ligands are apparently contributed by
histidine 22 and methionine 60. The molecular weight including heme is
10,014. The heme subunit is apparently homologous to small cytochromes c by
virtue of the location of the heme- binding site and its extraplanar
ligands. However, the amino acid sequence is closer to Paracoccus sp.
cytochrome c554(548) (37%) than it is to the heme subunit from Pseudomonas
putida p-cresol methylhydroxylase flavocytochrome c (20%). The
flavocytochrome c heme subunit is only 14% similar to the small cytochrome
c555 also found in Chlorobium. Secondary structure predictions suggest N-
and C-terminal helices as expected, but the midsection of the protein
probably folds somewhat differently from the small cytochromes of known
three- dimensional structure such as Pseudomonas cytochrome c551. Analyses
of the residues near the exposed heme edges of the cytochrome subunits of
P. putida and C. thiosulfatophilum flavocytochromes c (assuming homology to
proteins of known structure) indicate that charged residues are not
conserved, suggesting that electrostatic interactions are not involved in
the association of the heme and flavin subunits. The N- terminal sequence
of the flavoprotein subunit of flavocytochrome has also been determined. It
shows no similarity to the comparable region of the p-cresol
methylhydroxylase flavoprotein subunit from P. putida. The flavin-binding
hexapeptide, isolated and sequenced earlier (Kenney, W. C., McIntire, W.,
and Yamanaka, T. (1977) Biochim. Biophys. Acta 483, 467-474), is situated
at positions 40-46.