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Volume 270, Number 22, Issue of June 2, pp. 13358-13365, 1995
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Assembly of a Chromosomal Replication Machine: Two DNA Polymerases, a Clamp Loader, and Sliding Clamps in One Holoenzyme Particle
II. INTERMEDIATE COMPLEX BETWEEN THE CLAMP LOADER AND ITS CLAMP

Vytautas Naktinis , Rene Onrust , Linhua Fang , Mike O'Donnell

The Escherichia coli replicase, DNA polymerase III holoenzyme, derives its processivity from the subunit sliding clamp that encircles DNA and tethers the replicase to the template. The dimer is assembled around DNA by the complex clamp loader in an ATP-dependent reaction. In this report, the essential contact between the clamp loader and is identified as mediated through the subunit of the complex. The subunit appears to contact the face of the dimer ring that contains the two C termini. Surprisingly, ATP is required for the complex to bind , but not for to bind . This indicates that is buried in the complex and suggests a role for ATP in exposing for interaction with . A protease protection assay has been developed to specifically probe the subunit within the complex. The results of the assay are consistent with an ATP-induced conformational change in the complex that alters the state of the subunit within it. The implication of these key features to the clamp loading mechanism of the complex is discussed.




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