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Volume 270, Number 35, Issue of September 01, pp. 20258-20263, 1995
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Mutagenesis of the Ligand Binding Domain of the Human Retinoic Acid Receptor Identifies Critical Residues for 9-cis-Retinoic Acid Binding

(Received for publication, March 7, 1995; and in revised form, June 13, 1995)

Bonnie F. Tate Joseph F. Grippo

We have recently identified a small region (amino acids 405-419) within the ligand binding domain of a truncated human retinoic acid receptor alpha (Delta419) that is required for binding of 9-cis-retinoic acid (RA), but not all-trans-retinoic acid (t-RA). To probe the structural determinants of this high affinity 9-cis-RA binding site, a series of Delta419 mutants were prepared whereby an individual alanine residue was substituted for each amino acid within this region. These modified receptors were expressed in mammalian COS-1 cells and assayed for their ability to bind 9-cis-RA as well as t-RA. Only two of the mutants, M406A (mutation of methionine 406 to alanine), and I410A (mutation of isoleucine 410 to alanine) exhibit no detectable binding of 9-cis-RA when analyzed using saturation binding kinetics. Substitution of methionine 406 with the amino acids leucine, isoleucine, and valine yields mutant receptors that exhibit decreased binding for 9-cis-RA as the length or hydrophobicity of the R group decreases. Further substitution of methionine 406 with the small polar amino acid, threonine, results in a loss of detectable 9-cis-RA binding. Since amino acids 405-419 on a human RARalpha (hRARalpha) are predicted to form a short amphipathic alpha-helix, modeling of this structure into a helical wheel indicates that these two amino acids, methionine 406 and isoleucine 410, are actually positioned proximal to each other. Data presented here suggest that high affinity 9-cis-RA binding to a hRARalpha depends on an interaction with the two amino acids methionine 406 and isoleucine 410.




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