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(Received for publication, September 12, 1996, and in revised form, October 17, 1996)
From the Department of Microbiology, Groningen Biomolecular
Sciences and Biotechnology Institute, University of Groningen, Kerklaan
30, 9751 NN Haren, The Netherlands
Secondary glutamate transporters in neuronal and
glial cells in the mammalian central nervous system remove the
excitatory neurotransmitter glutamate from the synaptic cleft and
prevent the extracellular glutamate concentration to rise above
neurotoxic levels. Secondary structure prediction algorithms predict 6 transmembrane helices in the first half of the transporters but fail in
the C-terminal half where no clear helix-loop-helix motif is resolved in the hydropathy profile of the primary sequences. A number of previous studies have emphasized the importance of the C-terminal half
of the molecules for the function. Here we determine the membrane
topology of the C-terminal half of the glutamate transporters by
applying the phoA gene fusion technique to the homologous
bacterial glutamate transporter of Bacillus
stearothermophilus. High sequence conservation and very similar
hydropathy profiles in the C-terminal half warrant a similar folding as
in the glutamate transporters of the mammalian central nervous system.
The C-terminal half contains four putative transmembrane helices. The
strong hydrophobic moment and substitution moment of the most
C-terminal helix X that point to opposite faces of the helix suggest
that the helix faces the lipid environment with its least conserved,
hydrophobic face and the interior of the protein with its well
conserved, hydrophilic face. Residues that were shown before to be
critical for function cluster in helix X and VII.
Volume 271, Number 49,
Issue of December 6, 1996
pp. 31317-31321
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
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