Vol. 273, Issue 2, 997-1002, January 9, 1998
Photoaffinity Labeling by 4-Thiodideoxyuridine Triphosphate of
the HIV-1 Reverse Transcriptase Active Site during Synthesis
SEQUENCE OF THE UNIQUE LABELED HEXAPEPTIDE
Shanhua
Lin
,
William J.
Henzel¶,
Sunil
Nayak
, and
Don
Dennis
From the
Department of Chemistry and Biochemistry,
University of Delaware, Newark, Delaware 19716 and ¶ Genentech,
South San Francisco, California 94080
The active site of HIV-1 reverse transcriptase
(HIV-1 RT) was investigated by photoaffinity labeling based on
catalytic competence. A stable ternary elongation complex was assembled
containing enzyme, DNA template (RT20), DNA primer molecule (P12), and
the necessary dNTPs (one of which was
-32P-labeled) needed for primer elongation. The
photoaffinity probe 4-thiodideoxyuridine triphosphate was
incorporated uniquely at the 3
terminus of the 32P-labeled
DNA product. Upon photolysis, the p66 subunit of a HIV-1 RT heterodimer
(p66/p51) was uniquely cross-linked to the DNA product and
subsequently digested by either trypsin or endoproteinase Lys-C. The
labeled HIV-1 RT peptide was separated, purified, and finally subjected
to Edman microsequencing. A unique radioactive hexapeptide
(V276RQLCK281) was identified and sequenced.
Our photoaffinity labeling results were positioned on the HIV-1
RT·DNA·Fab complex x-ray crystallography structure and compared
with the suggested aspartic triad active site.
Copyright © 1998 by The American Society for Biochemistry and Molecular Biology, Inc.