J Biol Chem, Vol. 274, Issue 36, 25260-25265, September 3, 1999
Inhibition of the Broad Spectrum Nonmetallocarbapenamase of Class
A (NMC-A)
-Lactamase from Enterobacter cloacae by
Monocyclic
-Lactams,
Lionel
Mourey
,
Lakshmi P.
Kotra¶,
John
Bellettini
,
Alexey
Bulychev¶,
Michael
O'Brien
,
Marvin J.
Miller
,
Shahriar
Mobashery¶, and
Jean-Pierre
Samama
From the
Groupe de Cristallographie Biologique,
Institut de Pharmacologie et de Biologie Structurale du CNRS, 205 Route
de Narbonne, 31077 Toulouse Cedex, France, the ¶ Department of
Chemistry, Wayne State University, Detroit, Michigan 48202, and the
Department of Chemistry and Biochemistry, University of Notre
Dame, Notre Dame, Indiana 46556
-Lactamases hydrolyze
-lactam
antibiotics, a reaction that destroys their antibacterial activity.
These enzymes, of which four classes are known, are the primary cause
of resistance to
-lactam antibiotics. The class A
-lactamases
form the largest group. A novel class A
-lactamase, named the
nonmetallocarbapenamase of class A (NMC-A)
-lactamase, has been
discovered recently that has a broad substrate profile that included
carbapenem antibiotics. This is a serious development, since
carbapenems have been relatively immune to the action of these
resistance enzymes. Inhibitors for this enzyme are sought. We describe
herein that a type of monobactam molecule of our design inactivates the
NMC-A
-lactamase rapidly, efficiently, and irreversibly. The
mechanism of inactivation was investigated by solving the x-ray
structure of the inhibited NMC-A enzyme to 1.95 Å resolution. The
structure shed light on the nature of the fragmentation of the
inhibitor on enzyme acylation and indicated that there are two
acyl-enzyme species that account for enzyme inhibition. Each of these
inhibited enzyme species is trapped in a distinct local energy minimum
that does not predispose the inhibitor species for deacylation,
accounting for the irreversible mode of enzyme inhibition. Molecular
dynamics simulations provided evidence in favor of a dynamic motion for
the acyl-enzyme species, which samples a considerable conformational
space prior to the entrapment of the two stable acyl-enzyme species in
the local energy minima. A discussion of the likelihood of such dynamic motion for turnover of substrates during the normal catalytic processes of the enzyme is presented.
Copyright © 1999 by The American Society for Biochemistry and Molecular Biology, Inc.