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J Biol Chem, Vol. 274, Issue 51, 36146-36152, December 17, 1999

Peptides Corresponding to the N and C Termini of Ikappa B-alpha , -beta , and -epsilon as Probes of the Two Catalytic Subunits of Ikappa B Kinase, IKK-1 and IKK-2*

James R. BurkeDagger , Marcia K. Wood, Rolf-Peter Ryseck, Susan Walther, and Chester A. Meyers

From Drug Discovery Research, Bristol-Myers Squibb Pharmaceutical Research Institute, Princeton, New Jersey 08543

The signal-inducible phosphorylation of serines 32 and 36 of Ikappa B-alpha is the key step in regulating the subsequent ubiquitination and proteolysis of Ikappa B-alpha , which then releases NF-kappa B to promote gene transcription. The multisubunit Ikappa B kinase (msIKK) responsible for this phosphorylation contains two catalytic subunits, termed IKK-1 and IKK-2. Using recombinant IKK-2, a kinetic pattern consistent with a random, sequential binding mechanism was observed with the use of a peptide corresponding to amino acids 26-42 of Ikappa B-alpha . Values of 313 µM, 15.5 µM, and 1.7 min-1 were obtained for Kpeptide, KATP, and kcat, respectively. The value of alpha , a factor by which binding of one substrate changes the dissociation constant for the other substrate, was determined to be 0.2. Interestingly, the recombinant IKK-1 subunit gave similar values for alpha  and KATP, but values of 1950 µM and 0.016 min-1 were calculated for Kpeptide and kcat, respectively. This suggests that the IKK-2 catalytic subunit provides nearly all of the catalytic activity of the msIKK complex with the IKK-1 subunit providing little contribution to catalysis. Using peptides corresponding to different regions of Ikappa B-alpha within amino acids 21-47, it was shown that amino acids 31-37 provide most binding interactions (-4.7 kcal/mol of binding free energy) of the full-length Ikappa B-alpha (-7.9 kcal/mol) with the IKK-2. This is consistent with the observation that IKK-2 is able to phosphorylate the Ikappa B-beta and Ikappa B-epsilon proteins, which have consensus phosphorylation sites nearly identical to that of amino acids 31-37 of Ikappa B-alpha . A peptide corresponding to amino acids 279-303 in the C-terminal domain of Ikappa B-alpha was unable to activate IKK-2 to phosphorylate an N-terminal peptide, which is in contrast to the results observed with the msIKK. Moreover, the IKK-2 catalyzes the phosphorylation of the full-length Ikappa B-alpha and the amino acid 26-42 peptide with nearly equal efficiency, while the msIKK catalyzes the phosphorylation of the full-length Ikappa B-alpha 25,000 times more efficiently than the 26-42 peptide. Therefore, the C terminus of Ikappa B-alpha is important in activating the msIKK through interactions with subunits other than the IKK-2.


* The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger To whom correspondence should be addressed: Bristol-Myers Squibb, P.O. Box 4000, Princeton, NJ 08543. Tel.: 609-252-3445; Fax: 609-252-6058; E-mail: james.burke@bms.com.


Copyright © 1999 by The American Society for Biochemistry and Molecular Biology, Inc.
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