|
J Biol Chem, Vol. 274, Issue 51, 36357-36361, December 17, 1999
Tandem B1 Elements Located in a Mouse Methylation Center Provide
a Target for de Novo DNA Methylation*
Phillip A.
Yates ,
Robert W.
Burman§,
Padmaja
Mummaneni¶,
Sandra
Krussel , and
Mitchell S.
Turker §
From the Center for Research on Occupational and
Environmental Toxicology and § Department of Molecular and
Medical Genetics, Oregon Health Sciences University, Portland, Oregon
97201 and ¶ Section on Neuroendocrinology, Laboratory of
Developmental Neurobiology, 49/5A38, NICHD, National Institutes of
Health, Bethesda, Maryland 20892
A cis-acting methylation center that signals
de novo DNA methylation is located upstream of the mouse
Aprt gene. In the current study, two approaches were taken
to determine if tandem B1 repetitive elements found at the 3' end of
the methylation center contribute to the methylation signal. First,
bisulfite genomic sequencing demonstrated that CpG sites within the B1
elements were methylated at relative levels of 43% in embryonal stem
cells deficient for the maintenance DNA methyltransferase when compared
with wild type embryonal stem cells. Second, the ability of the B1
elements to signal de novo methylation upon stable
transfection into mouse embryonal carcinoma cells was examined. This
approach demonstrated that the B1 elements were methylated de
novo to a high level in the embryonal carcinoma cells and that
the B1 elements acted synergistically. The results from these
experiments provide strong evidence that the tandem B1 repetitive
elements provide a significant fraction of the methylation center
signal. By extension, they also support the hypothesis that one role
for DNA methylation in mammals is to protect the genome from expression
and transposition of parasitic elements.
*
This work was supported by a grant from the Council for
Tobacco Research (to M. S. T.) and National Institutes of Health
predoctoral training Grant T32 (to R. W. B.).The costs of publication of this article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
To whom correspondence should be addressed: CROET, L606,
Oregon Health Sciences University, 3181 SW Sam Jackson Park Rd., Portland, OR 97201. Tel.: 503-494-2168; Fax: 503-494-3849; E-mail turkerm@ohsu.edu.
Copyright © 1999 by The American Society for Biochemistry and Molecular Biology, Inc.

CiteULike Complore Connotea Del.icio.us Digg Reddit Technorati What's this?
This article has been cited by other articles:

|
 |

|
 |
 
Y. Chen, A. Dhupelia, and C. J. Schoenherr
The Igf2/H19 imprinting control region exhibits sequence-specific and cell-type-dependent DNA methylation-mediated repression
Nucleic Acids Res.,
February 1, 2009;
37(3):
793 - 803.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
H. R. Woo and E. J. Richards
Signaling silence--breaking ground and spreading out
Genes & Dev.,
July 1, 2008;
22(13):
1719 - 1723.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
D. Strathdee, C. B. A. Whitelaw, and A. J. Clark
Distal Transgene Insertion Affects CpG Island Maintenance during Differentiation
J. Biol. Chem.,
April 25, 2008;
283(17):
11509 - 11515.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
H.-R. Wang, C.-Y. Hsieh, Y.-C. Twu, and L.-C. Yu
Expression of the Human Sda -1,4-N-Acetylgalactosaminyltransferase II Gene is Dependent on the Promoter Methylation Status
Glycobiology,
January 1, 2008;
18(1):
104 - 113.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
A. J. Wood, D. Bourc'his, T. H. Bestor, and R. J. Oakey
Allele-specific demethylation at an imprinted mammalian promoter
Nucleic Acids Res.,
November 29, 2007;
35(20):
7031 - 7039.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
W. M Grady
CIMP and colon cancer gets more complicated
Gut,
November 1, 2007;
56(11):
1498 - 1500.
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
J. Meunier, A. Khelifi, V. Navratil, and L. Duret
Homology-dependent methylation in primate repetitive DNA
PNAS,
April 12, 2005;
102(15):
5471 - 5476.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
H. Kim, Y. M. Kwon, J. S. Kim, H. Lee, J.-H. Park, Y. M. Shim, J. Han, J. Park, and D.-H. Kim
Tumor-Specific Methylation in Bronchial Lavage for the Early Detection of Non-Small-Cell Lung Cancer
J. Clin. Oncol.,
June 15, 2004;
22(12):
2363 - 2370.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
C. SPILLANE, C. BAROUX, J.-M. ESCOBAR-RESTREPO, D.R. PAGE, S. LAOUEILLE, and U. GROSSNIKLAUS
Transposons and Tandem Repeats Are Not Involved in the Control of Genomic Imprinting at the MEDEA Locus in Arabidopsis
Cold Spring Harb Symp Quant Biol,
January 1, 2004;
69(0):
465 - 476.
[Abstract]
[PDF]
|
 |
|

|
 |

|
 |
 
F. A. Feltus, E. K. Lee, J. F. Costello, C. Plass, and P. M. Vertino
Predicting aberrant CpG island methylation
PNAS,
October 14, 2003;
100(21):
12253 - 12258.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
A. N. Carnell and J. I. Goodman
The Long (LINEs) and the Short (SINEs) of It: Altered Methylation as a Precursor to Toxicity
Toxicol. Sci.,
October 1, 2003;
75(2):
229 - 235.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
C. Coombes, P. Arnaud, E. Gordon, W. Dean, E. A. Coar, C. M. Williamson, R. Feil, J. Peters, and G. Kelsey
Epigenetic Properties and Identification of an Imprint Mark in the Nesp-Gnasxl Domain of the Mouse Gnas Imprinted Locus
Mol. Cell. Biol.,
August 15, 2003;
23(16):
5475 - 5488.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
P. A. Yates, R. Burman, J. Simpson, O. N. Ponomoreva, M. J. Thayer, and M. S. Turker
Silencing of Mouse Aprt Is a Gradual Process in Differentiated Cells
Mol. Cell. Biol.,
July 1, 2003;
23(13):
4461 - 4470.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
H. Tamaru and E. U. Selker
Synthesis of Signals for De Novo DNA Methylation in Neurospora crassa
Mol. Cell. Biol.,
April 1, 2003;
23(7):
2379 - 2394.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
N. C. Riddle and E. J. Richards
The Control of Natural Variation in Cytosine Methylation in Arabidopsis
Genetics,
September 1, 2002;
162(1):
355 - 363.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
B. Reinhart, M. Eljanne, and J. R. Chaillet
Shared Role for Differentially Methylated Domains of Imprinted Genes
Mol. Cell. Biol.,
April 1, 2002;
22(7):
2089 - 2098.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
I. G. Lin, L. Han, A. Taghva, L. E. O'Brien, and C.-L. Hsieh
Murine De Novo Methyltransferase Dnmt3a Demonstrates Strand Asymmetry and Site Preference in the Methylation of DNA In Vitro
Mol. Cell. Biol.,
February 1, 2002;
22(3):
704 - 723.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
A. Bird
DNA methylation patterns and epigenetic memory
Genes & Dev.,
January 1, 2002;
16(1):
6 - 21.
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
J. M. Greally
Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome
PNAS,
December 21, 2001;
(2001)
12539199.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
R. Singal and J. M. vanWert
De novo methylation of an embryonic globin gene during normal development is strand specific and spreads from the proximal transcribed region
Blood,
December 1, 2001;
98(12):
3441 - 3446.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
J. C. Rice and B. W. Futscher
Transcriptional repression of BRCA1 by aberrant cytosine methylation, histone hypoacetylation and chromatin condensation of the BRCA1 promoter
Nucleic Acids Res.,
September 1, 2000;
28(17):
3233 - 3239.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
P. Arnaud, C. Goubely, T. Pélissier, and J.-M. Deragon
SINE Retroposons Can Be Used In Vivo as Nucleation Centers for De Novo Methylation
Mol. Cell. Biol.,
May 15, 2000;
20(10):
3434 - 3441.
[Abstract]
[Full Text]
|
 |
|

|
 |

|
 |
 
J. M. Greally
Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome
PNAS,
January 8, 2002;
99(1):
327 - 332.
[Abstract]
[Full Text]
[PDF]
|
 |
|
Copyright © 1999 by the American Society for Biochemistry and Molecular Biology.
|
Advertisement
Advertisement
|