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Originally published In Press as doi:10.1074/jbc.M004877200 on August 8, 2000

J. Biol. Chem., Vol. 275, Issue 43, 33457-33463, October 27, 2000
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RNA Polymerase-cNMP-ligated cAMP Receptor Protein (CRP) Mutant Interactions in the Enhancement of Transcription by CRP Mutants*

Shenglun Wang, Ying Shi, Inna GorshkovaDagger , and Frederick P. Schwarz§

From the Center for Advanced Research in Biotechnology/National Institute of Standards and Technology, Rockville, Maryland 20850

The enhancement of the transcription of three synthetic promoters by cNMP-ligated cAMP receptor protein (CRP)/mutant complexes was determined from the transcription yields of a short AAUU transcript in an abortive initiation in vitro transcription assay. The cNMP-ligated CRP and mutants were cAMP, cGMP, and cIMP ligated with CRP, T127L CRP, S128A CRP, and T127L/S128A CRP. The transcriptional activation of a 152-base pair lacUV5 promoter (synlac promoter) with a CRP consensus binding site sequence (syncon promoter) was enhanced by an average factor of 12.3 ± 0.5 with the cAMP-ligated complexes of CRP/mutants and cGMP-ligated T127L, although their promoter binding site affinities varied by a factor of 5. However, in the presence of bound RNA polymerase, the binding affinities only ranged from 0.8 ± 0.2 × 107 M-1 for cAMP-ligated CRP* to 1.8 ± 0.3 × 107 M-1 for cAMP-ligated CRP, indicating that the CRP/mutant interacts with the bound RNA polymerase, which would account for the near constancy of the enhancement factors. The corresponding enhancement factors for the synlac promoter and a promoter with a different CRP binding site sequence (syngal promoter) were also nearly the same, 7.2 ± 0.7 and 6 ± 1, respectively. The binding reaction of the syncon promoter to the RNA polymerase is exothermic, with a binding constant (Kb) = 2.1 ± 0.2 × 107 M-1.


* This work was supported by National Science Foundation Grant MCB-9722884 (to F. P. S.).The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger Present address: Laboratory of Molecular Genetics, NIH NICHD, Bethesda, MD 20892.

§ To whom correspondence should be addressed: Center for Advanced Research in Biotechnology/National Institute of Standards and Technology, 9600 Gudelsky Dr., Rockville, MD 20850. E-mail: fred@carb.nist.gov.


Copyright © 2000 by The American Society for Biochemistry and Molecular Biology, Inc.
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B. Benoff, H. Yang, C. L. Lawson, G. Parkinson, J. Liu, E. Blatter, Y. W. Ebright, H. M. Berman, and R. H. Ebright
Structural Basis of Transcription Activation: The CAP-alpha CTD-DNA Complex
Science, August 30, 2002; 297(5586): 1562 - 1566.
[Abstract] [Full Text] [PDF]




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