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Originally published In Press as doi:10.1074/jbc.M007007200 on February 1, 2001

J. Biol. Chem., Vol. 276, Issue 17, 14289-14298, April 27, 2001
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Expression Studies on Clustered Trypanosomatid Box C/D Small Nucleolar RNAs*

Yu-xin XuDagger §, Li Liu§, Carlos Lopez-Estraño, and Shulamit Michaeli||

From the Dagger  Department of Biological Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel and the  Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan 52900, Israel

We analyzed three chromosomal loci of the trypanosomatid Leptomonas collosoma encoding box C/D small nucleolar RNAs (snoRNAs). All the snoRNAs that were analyzed here carry two sequences complementary to rRNA target sites and obey the +5 rule for guide methylation. Studies on transgenic parasites carrying the snoRNA-2 gene in the episomal expression vector (pX-neo) indicated that no promoter activity was found immediately adjacent to this gene. Deleting the flanking sequences of snoRNA-2 affected the expression; in the absence of the 3'-flanking (but not 5'-flanking) sequence, the expression was almost completely abolished. The snoRNA genes are transcribed as polycistronic RNA. All snoRNAs can be folded into a common stem-loop structure, which may play a role in processing the polycistronic transcript. snoRNA B2, a member of a snoRNA cluster, was expressed when cloned into the episomal vector, suggesting that each gene within a cluster is individually processed. Studies with permeable cells indicated that snoRNA gene transcription was relatively sensitive to alpha -amanitin, thus supporting transcription by RNA polymerase II. We propose that snoRNA gene expression, similar to protein-coding genes in this family, is regulated at the processing level.


* This work was supported by a grant from the Israeli Ministry of Health.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) AF331656

§ The first two authors contributed equally to this work.

|| To whom correspondence should be addressed. Tel.: 972-3-531-8068; Fax: 972-3-535-1824; E-mail: michaes@mail.biu.ac.il.


Copyright © 2001 by The American Society for Biochemistry and Molecular Biology, Inc.
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