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Originally published In Press as doi:10.1074/jbc.M008209200 on February 14, 2001

J. Biol. Chem., Vol. 276, Issue 19, 15996-16007, May 11, 2001
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Transcript Expression in Saccharomyces cerevisiae at High Salinity*,

Jaqueline Yale and Hans J. BohnertDagger

From the Department of Biochemistry, University of Arizona, Biosciences West, Tucson, Arizona 856721-0088

Transcript expression of Saccharomyces cerevisiae at high salinity was determined by microarray analysis of 6144 open reading frames (ORFs). From cells grown in 1 M NaCl for 10, 30, and 90 min, changes in transcript abundance >2-fold were classified. Salinity-induced ORFs increased over time: 107 (10 min), 243 (30 min), and 354 (90 min). Up-regulated, functionally unknown ORFs increased from 17 to 149 over this period. Expression patterns were similar early, with 67% of up-regulated transcripts after 10 min identical to those at 30 min. The expression profile after 90 min revealed different up-regulated transcripts (identities of 13% and 22%, respectively). Nucleotide and amino acid metabolism exemplified the earliest responses to salinity, followed by ORFs related to intracellular transport, protein synthesis, and destination. Transcripts related to energy production were up-regulated throughout the time course with respiration-associated transcripts strongly induced at 30 min. Highly expressed at 90 min were known salinity stress-induced genes, detoxification-related responses, transporters of the major facilitator superfamily, metabolism of energy reserves, nitrogen and sulfur compounds, and lipid, fatty acid/isoprenoid biosynthesis. We chose severe stress conditions to monitor responses in essential biochemical mechanisms. In the mutant, Delta gpd1/gpd2, lacking glycerol biosynthesis, the stress response was magnified with a partially different set of up-regulated ORFs.

* This work was supported by Grant DBI-9813360 from the National Science Foundation, Plant Genome Initiative.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

The on-line version of this article (available at http://www.jbc.org) contains Tables sI-sIV.

Dagger To whom correspondence should be addressed: Dept. of Biochemistry, University of Arizona, 1041 E. Lowell St. Tucson, AZ 85721-0088, USA. Tel.: 520-621-7961; Fax: 520-621-1697; E-mail: bohnerth@u.arizona.edu.

Copyright © 2001 by The American Society for Biochemistry and Molecular Biology, Inc.
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