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Originally published In Press as doi:10.1074/jbc.M005719200 on November 6, 2000

J. Biol. Chem., Vol. 276, Issue 3, 1993-1997, January 19, 2001
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A Bipartite Substrate Recognition Motif for Cyclin-dependent Kinases*

David Y. TakedaDagger , James A. WohlschlegelDagger , and Anindya Dutta§

From the Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115

Cy or RXL motifs have been previously shown to be cyclin binding motifs found in a wide range of cyclin-Cdk interacting proteins. We report the first kinetic analysis of the contribution of a Cy motif on a substrate to phosphorylation by cyclin-dependent kinases. For both cyclin A-Cdk2 and cyclin E-Cdk2 enzymes, the presence of a Cy motif decreased the Km(peptide) 75-120-fold while the kcat remained unchanged. The large effect of the Cy motif on the Km(peptide) suggests that the Cy motif and (S/T)PX(K/R) together constitute a bipartite substrate recognition sequence for cyclin-dependent kinases. Systematic changes in the length of the linker between the Cy motif and the phosphoacceptor serine suggest that both sites are engaged simultaneously to the cyclin and the Cdk, respectively, and eliminate a "bind and release" mechanism to increase the local concentration of the substrate. PS100, a peptide containing a Cy motif, acts as a competitive inhibitor of cyclin-Cdk complexes with a 15-fold lower Ki for cyclin E-Cdk2 than for cyclin A-Cdk2. These results provide kinetic proof that a Cy motif located a minimal distance from the SPXK is essential for optimal phosphorylation by Cdks and suggest that small chemicals that mimic the Cy motif would be specific inhibitors of substrate recognition by cyclin-dependent kinases.


* This work was supported by funds from the United States Army Medical Research and Materiel Command (DAMD 17-97-1-7314) and a predoctoral fellowship (to J. A. W.) from United States Dept. of Defense (National Defense Science and Engineering Graduate Fellowship Program).The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger Both authors contributed equally to this work.

§ To whom correspondence should be addressed. Tel.: 617-278-0468; Fax: 617-732-7449; E-mail: adutta@rics.bwh.harvard.edu.


Copyright © 2001 by The American Society for Biochemistry and Molecular Biology, Inc.
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