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Originally published In Press as doi:10.1074/jbc.M103738200 on May 30, 2001

J. Biol. Chem., Vol. 276, Issue 31, 28927-28932, August 3, 2001
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Repression of Bacteriophage phi 29 Early Promoter C2 by Viral Protein p6 Is Due to Impairment of Closed Complex*

Ana Camacho and Margarita SalasDagger

From the Centro de Biología Molecular "Severo Ochoa" (Consejo Superior de Investigaciones Científicas-Universidad Autónoma de Madrid), Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain

Bacillus subtilis phage phi 29 encodes a very abundant protein, p6, which is a non sequence-specific DNA-binding protein. Protein p6 has the potential to bind cooperatively to the phage genome, forming a nucleoprotein complex in which the DNA adopts a right-handed toroidal conformation winding around a protein core. The formation of this complex at the right end of the phage genome where the early promoter C2 is located affects local topology, which may contribute to the promoter repression, although the underlying molecular mechanism of this repression is not presently known. In this study, we analyzed the effect of the p6 nucleoprotein complex on the formation of transcription complexes at the C2 promoter. The results obtained indicate that the nucleoprotein complex does not occlude promoter C2 to RNA polymerase because both proteins can bind to the same DNA molecule. Protein p6 binds along the fragment including the sequence adjacent to the bound polymerase, altering the structure of the transcriptional complex and affecting specifically the stability of the closed complex. The findings presented might help to answer some of the open questions about the concerted molecular mechanisms of histone-like proteins as transcriptional silencers.


* This work was supported by research Grants 2R01 GM27242-21 from the National Institutes of Health, PB98-0645 from the Dirección General de Investigación Científica y Técnica, and Bio-CT98-0250 from the European Union and by an institutional grant from the Fundación Ramón Areces.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger  To whom correspondence should be addressed. Tel.: 34-91-397-8435; Fax: 34-91-397-84-90; E-mail: msalas@cbm.uam.es.


Copyright © 2001 by The American Society for Biochemistry and Molecular Biology, Inc.


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