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Originally published In Press as doi:10.1074/jbc.M108993200 on January 2, 2002
J. Biol. Chem., Vol. 277, Issue 12, 10187-10193, March 22, 2002
The Crystal Structure of Helicobacter pylori
Cysteine-rich Protein B Reveals a Novel Fold for a Penicillin-binding
Protein*
Lucas
Lüthy,
Markus G.
Grütter, and
Peer R. E.
Mittl
From the Biochemisches Institut, Universität Zürich,
Winterthurer Strasse 190, 8057 Zürich, Switzerland
Colonization of the gastric mucosa with the
spiral-shaped Gram-negative proteobacterium Helicobacter
pylori is probably the most common chronic infection in humans.
The genomes of H. pylori strains J99 and 26695 have been
completely sequenced. Functional and three-dimensional structural
information is available for less than one third of all open reading
frames. We investigated the function and three-dimensional structure of
a member from a family of cysteine-rich hypothetical proteins that are
unique to H. pylori and Campylobacter jejuni.
The structure of H. pylori cysteine-rich protein (Hcp) B
possesses a modular architecture consisting of four / -motifs that
are cross-linked by disulfide bridges. The Hcp repeat is similar
to the tetratricopeptide repeat, which is frequently found in
protein/protein interactions. In contrast to the tetratricopeptide
repeat, the Hcp repeat is 36 amino acids long. HcpB is capable of
binding and hydrolyzing 6-amino penicillinic acid and 7-amino
cephalosporanic acid derivatives. The HcpB fold is distinct from the
fold of any known penicillin-binding protein, indicating that the Hcp
proteins comprise a new family of penicillin-binding proteins. The
putative penicillin binding site is located in an amphipathic groove on
the concave side of the molecule.
*
This work was supported by the Hartmann-Müller
Foundation (Zürich/CH), the Baugarten Stiftung (Zürich/CH),
and Grant 3100-063794.001 from the Swiss National Science Foundation.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
The atomic coordinates and the structure factors (code 1KLX) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).
To whom correspondence should be addressed. Tel.: 41-1-635-6559;
Fax: 41-1-635-6834; E-mail: mittl@bioc.unizh.ch.
Copyright © 2002 by The American Society for Biochemistry and Molecular Biology, Inc.

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