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Originally published In Press as doi:10.1074/jbc.M203489200 on May 15, 2002

J. Biol. Chem., Vol. 277, Issue 30, 27401-27411, July 26, 2002
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Latency-associated Nuclear Antigen (LANA) Cooperatively Binds to Two Sites within the Terminal Repeat, and Both Sites Contribute to the Ability of LANA to Suppress Transcription and to Facilitate DNA Replication*

Alexander C. GarberDagger , Jianhong Hu, and Rolf Renne§

From the Division of Hematology/Oncology, Department of Molecular Biology and Microbiology, Case Western Reserve University, Cleveland, Ohio 44106

The latency-associated nuclear antigen (LANA) of Kaposi's sarcoma-associated herpesvirus is a multifunctional protein with important roles in both transcriptional regulation and episomal maintenance. LANA is also a DNA-binding protein and has been shown to specifically bind to a region within the terminal repeat. Here, we have performed a detailed analysis of the DNA-binding activity of LANA and show that it binds two sites separated by 22 bp. We used electrophoretic mobility shift assay to quantitatively analyze the binding sites and determined that the Kd of the high affinity site is 1.51 ± 0.16 nM. Examination of the contribution of nucleotides near the ends of the site showed that the core binding site consists of 16 bp, 13 of which are conserved between both sites. Analysis of the affinity of each site alone and in tandem revealed that the binding to the second site is primarily due to cooperativity with the first site. Using deletion and point mutations, we show that both sites contribute to the ability of LANA to suppress transcription and to facilitate DNA replication. In addition, we show that the ability of LANA to carry out these functions is directly proportional to its affinity for the sites in this region. The affinities, spacing, and cooperative binding between the two sites is similar to that of the Epstein-Barr virus dyad symmetry element oriP, suggesting a requirement for such an element in latent replication of these related DNA tumor viruses.


* This work was supported in part by Grant CA 88763-2 from the National Institutes of Health (to R. R.).The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger Recipient of Research Oncology Training Grant T32 HL 07147 from the National Institutes of Health.

§ Mount Sinai Healthcare Foundation Scholar. To whom correspondence should be addressed: Div. of Hematology/Oncology, Dept. of Molecular Biology and Microbiology, BRB R301, 2109 Adelbert Rd., Case Western Reserve University, Cleveland, OH 44106. Tel.: 216-368-1190; Fax: 216-368-1166; E-mail: rfr3@po.cwru.edu.


Copyright © 2002 by The American Society for Biochemistry and Molecular Biology, Inc.
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