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J. Biol. Chem., Vol. 277, Issue 51, 50015-50021, December 20, 2002
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From the Institute for Biological Resources and Functions, National
Institute of Advanced Industrial Science and Technology, 2-17-2-1 Tsukisamu-higashi, Toyohira-ku, Sapporo 062-8517, Japan
We performed genome-wide expression analysis to
determine genetic responses in Saccharomyces cerevisiae to
a low temperature environment using a cDNA microarray.
Approximately 25% of the genes in the yeast genome were found to be
involved in the response of yeast to low temperature. This finding of a
large number of genes being involved in the response to low temperature
enabled us to give a functional interpretation to the genetic responses to the stimulus. Functional and clustering analyses of temporal changes
in gene expression revealed that global states of the expressions of
up-regulated genes could be characterized as having three phases (the
early, middle, and late phases). In each phase, genes related to rRNA
synthesis, ribosomal proteins, or several stress responses are
time-dependently up-regulated, respectively. Through these
phases, yeast cells may improve reduced efficiency of translation and
enhance cell protection mechanisms to survive under a low temperature
condition. Furthermore, these time-dependent regulations of
these genes would be controlled by the cAMP-protein kinase A pathway.
The results of our study provide a global description of
transcriptional response for adaptation to low temperature in yeast cells.
Comprehensive Expression Analysis of
Time-dependent Genetic Responses in Yeast Cells to Low
Temperature*
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
To whom correspondence should be addressed. Tel.: 81-11-857-8923;
Fax: 81-11-857-8992; E-mail: s.ohgiya@aist.go.jp.
Copyright © 2002 by The American Society for Biochemistry and Molecular Biology, Inc.
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