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Originally published In Press as doi:10.1074/jbc.C300285200 on August 13, 2003
J. Biol. Chem., Vol. 278, Issue 43, 42234-42239, October 24, 2003
A Critical Role of the 3' Terminus of Nascent DNA Chains in Recognition of Stalled Replication Forks*
Toshimi Mizukoshi ¶,
Taku Tanaka ||,
Ken-ichi Arai**,
Daisuke Kohda  , and
Hisao Masai||
From the
Department of Structural Biology, Biomolecular Engineering Research Institute, Suita, Osaka 565-0874, Japan, the ||Department of Cell Biology, Tokyo Metropolitan Institute of Medical Science, Tokyo 113-8613, Japan, the **Department of Molecular and Developmental Biology, Institute of Medical Science, University of Tokyo, Tokyo 108-8639, Japan
Arrest of replication forks by various internal and external threats evokes a myriad of cellular reactions, collectively known as DNA replication checkpoint responses. In bacteria, PriA is essential for restoration of stalled replication forks and recombinational repair of double-stranded DNA breaks and is a candidate sensor protein that may recognize arrested forks. Here, we report that PriA protein specifically recognizes 3' termini of arrested nascent DNA chains at model stalled replication forks in vitro. Mutations in the putative "3' terminus binding pocket" present in the N-terminal segment of PriA result in reduced binding to stalled replication fork structures and loss of its biological functions. The results suggest a mechanism by which stalled replication forks are recognized by a sensor protein for checkpoint responses.
Received for publication, June 30, 2003
, and in revised form, July 28, 2003.
* The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
The on-line version of this article (available at http://www.jbc.org) contains Supplemental Figs. S1 and S2 and Table S1.
These authors contributed equally to this work.
¶ Present address: Ajinomoto Co., Inc., Basical Analytical Chemistry Group, Institute of Life Sciences, 1-1 Suzuki-cho, Kawasaki-ku, Kawasaki-shi, Kanagawa 210-8681, Japan.
 Present address: Medical Inst. of Bioregulation, Kyushu University, Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan.
 To whom correspondence should be addressed: Dept. of Cell Biology, Tokyo Metropolitan Inst. of Medical Science, 3-18-22 Honkomagome, Bunkyo-ku, Tokyo 113-8613, Japan. Tel.: 81-3-5685-2264; Fax: 81-3-5685-2932; E-mail: hmasai{at}rinshoken.or.jp.

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Copyright © 2003 by the American Society for Biochemistry and Molecular Biology.
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