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Originally published In Press as doi:10.1074/jbc.M403121200 on April 13, 2004

J. Biol. Chem., Vol. 279, Issue 24, 25381-25389, June 11, 2004
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Both CTCF-dependent and -independent Insulators Are Found between the Mouse T Cell Receptor {alpha} and Dad1 Genes*

Frédérique Magdinier{ddagger}, Timur M. Yusufzai, and Gary Felsenfeld§

From the Laboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, Maryland 20892-0504

The T cell rearrangement of the T cell receptor (TCR) genes TCR{alpha} and {delta} is specifically regulated by a complex interplay between enhancer elements and chromatin structure. The {alpha} enhancer is active in T cells and drives TCR{alpha} recombination in collaboration with a locus control region-like element located downstream of the C{alpha} gene on mouse chromosome 14. Twelve kb further down-stream lies another gene, Dad1, with a program of expression different from that of TCR{alpha}. The ~6-kb locus control region element lying between them contains multiple regulatory sites with a variety of roles in regulating the two genes. Previous evidence has indicated that among these there are widely distributed regions with enhancer blocking (insulating) activity. We have shown in this report that one of these sites, not previously examined, strongly binds the insulator protein CCTC-binding factor (CTCF) in vitro and in vivo and can function in an enhancer blocking assay. However, other regions within the 6-kb element that also can block enhancers clearly do not harbor CTCF sites and thus must reflect the presence of a previously undetected and distinct vertebrate insulator activity.


Received for publication, March 19, 2004 , and in revised form, April 12, 2004.

* The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

{ddagger} Present address: Laboratoire de Biologie Moléculaire de la cellule, CNRS Unite Mixte de Recherche 5161, Ecole Normale Supérieure, 46 Allée d'Italie, 69364 Lyon cedex 07, France.

§ To whom correspondence should be addressed. Tel.: 301-496-4173; Fax: 301-496-0201; E-mail: gary.felsenfeld{at}nih.gov.


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