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Originally published In Press as doi:10.1074/jbc.M413959200 on January 13, 2005

J. Biol. Chem., Vol. 280, Issue 12, 11505-11512, March 25, 2005
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NMR Structure of the First PHD Finger of Autoimmune Regulator Protein (AIRE1)

INSIGHTS INTO AUTOIMMUNE POLYENDOCRINOPATHY-CANDIDIASIS-ECTODERMAL DYSTROPHY (APECED) DISEASE*{boxs}

Matthew James Bottomley{ddagger}, Gunter Stier§, Danilo Pennacchini¶, Gaelle Legube§, Bernd Simon§, Asifa Akhtar§, Michael Sattler§, and Giovanna Musco¶||

From the {ddagger}Istituto di Ricerche di Biologia Molecolare P. Angeletti, Via Pontina Km. 30.600, 00040 Pomezia (RM), Italy, the §European Molecular Biology Laboratory, Meyerhofstrasse1, 69117 Heidelberg, Germany, and the Biomolecular NMR Laboratory, Dulbecco Telethon Institute c/o S. Raffaele Scientific Institute, Via Olgettina 58, 20132, Milano, Italy

Mutations in the autoimmune regulator protein AIRE1 cause a monogenic autosomal recessively inherited disease: autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED). AIRE1 is a multidomain protein that harbors two plant homeodomain (PHD)-type zinc fingers. The first PHD finger of AIRE1 is a mutational hot spot, to which several pathological point mutations have been mapped. Using heteronuclear NMR spectroscopy, we determined the solution structure of the first PHD finger of AIRE1 (AIRE1-PHD1), and characterized the peptide backbone mobility of the domain. We performed a conformational analysis of pathological AIRE1-PHD1 mutants that allowed us to rationalize the structural impact of APECED-causing mutations and to identify an interaction site with putative protein ligands of the AIRE1-PHD1 domain. The structure unequivocally exhibits the canonical PHD finger fold, with a highly conserved tryptophan buried inside the structure. The PHD finger is stabilized by two zinc ions coordinated in an interleaved (cross-brace) scheme. This zinc coordination resembles RING finger domains, which can function as E3 ligases in the ubiquitination pathway. Based on this fold similarity, it has been suggested that PHD fingers might also function as E3 ligases, although this hypothesis is controversial. At variance to a previous report, we could not find any evidence that AIRE1-PHD1 has an intrinsic E3 ubiquitin ligase activity, nor detect any direct interaction between AIRE1-PHD1 and its putative cognate E2. Consistently, we show that the AIRE1-PHD1 structure is clearly distinct from the RING finger fold. Our results point to a function of the AIRE1-PHD1 domain in protein-protein interactions, which is impaired in some APECED mutations.


Received for publication, December 13, 2004 , and in revised form, January 12, 2005.

The atomic coordinates (code 1XWH) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).

Chemical shift and restraints lists that were used in the structure calculations (code 6374) have been deposited in the BioMagResBank.

* This work was supported in part by EMBO short-term (ASTF1442002) and long-term (ALTF 372-2003) fellowships, respectively (to G. M. and G. L.), Dr. R. Bazzo, the Istituto di Ricerche di Biologia Molecolare, the Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine Paramagnetiche (University of Florence, Italy) (to M. J. B.), and the Deutsche Forschungsgesellschaft (to M. S.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

{boxs} The on-line version of this article (available at http://www.jbc.org) contains Supplementary Materials.

|| To whom correspondence should be addressed. Tel.: 390226434824; Fax: 390226434153; E-mail: musco.giovanna{at}hsr.it or gmusco{at}dti.telethon.it.


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