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Originally published In Press as doi:10.1074/jbc.M500338200 on March 3, 2005

J. Biol. Chem., Vol. 280, Issue 18, 18008-18014, May 6, 2005
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Mg2+ and Ca2+ Differentially Regulate DNA Binding and Dimerization of DREAM*

Masanori Osawa{ddagger}§, Alexandra Dace{ddagger}, Kit I. Tong¶, Aswani Valiveti{ddagger}, Mitsuhiko Ikura¶, and James B. Ames{ddagger}||

From the {ddagger}Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, Rockville, Maryland 20850 and the Division of Molecular and Structural Biology, Ontario Cancer Institute and Department of Medical Biophysics, University of Toronto, Ontario M5G 2M9, Canada

DREAM (calsenilin/KChIP3) is an EF-hand calcium-binding protein that represses transcription of prodynorphin and c-fos genes. Here we present structural and binding studies on single-site mutants of DREAM designed to disable Ca2+ binding to each of the functional EF-hands (EF-2: D150N; EF-3: E186Q; and EF-4: E234Q). Isothermal titration calorimetry (ITC) analysis of Ca2+ binding to the various mutants revealed that, in the absence of Mg2+, Ca2+ binds independently and sequentially to EF-3 ({Delta}H = -2.4 kcal/mol), EF-4 ({Delta}H = +5.2 kcal/mol), and EF-2 ({Delta}H = +1 kcal/mol). By contrast, only two Ca2+ bind to DREAM in the presence of physiological levels of Mg2+ for both wild-type and D150N, suggesting that EF-2 binds constitutively to Mg2+. ITC measurements demonstrate that one Mg2+ binds enthalpically with high affinity (Kd = 13 µM and {Delta}H = -0.79 kcal/mol) and two or more Mg2+ bind entropically in the millimolar range. Size-exclusion chromatography studies revealed that Mg2+ stabilizes DREAM as a monomer, whereas Ca2+ induces protein dimerization. Electrophoretic mobility shift assays indicated that Mg2+ is essential for sequence-specific binding of DREAM to DNA response elements (DREs) in prodynorphin and c-fos genes. The EF-hand mutants bind specifically to DRE, suggesting they are functionally intact. None of the EF-hand mutants bind DRE at saturating Ca2+ levels, suggesting that binding of a single Ca2+ at either EF-3 or EF-4 is sufficient to drive conformational changes that abolish DNA binding. NMR structural analysis indicates that metal-free DREAM adopts a folded yet flexible molten globule-like structure. Both Ca2+ and Mg2+ induce distinct conformational changes, which stabilize tertiary structure of DREAM. We propose that Mg2+ binding at EF-2 may structurally bridge DREAM to DNA targets and that Ca2+-induced protein dimerization disrupts DNA binding.


Received for publication, January 11, 2005 , and in revised form, February 22, 2005.

* This work was supported in part by a Beckman Foundation Young Investigator Award (to J. B. A.) and Grants NS45909 and EY12347 from the National Institutes of Health (to J. B. A). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

§ Supported by postdoctoral fellowships from the Human Frontier Science Program and Uehara Memorial Foundation.

|| To whom correspondence should be addressed: The Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, 9600 Gudelsky Dr., Rockville, MD 20850. Tel.: 301-738-6120; Fax: 301-738-6255; E-mail: james{at}carb.nist.gov.


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