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Originally published In Press as doi:10.1074/jbc.M413216200 on July 22, 2005

J. Biol. Chem., Vol. 280, Issue 37, 32539-32547, September 16, 2005
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Probing the Mechanism of the Mycobacterium tuberculosis {beta}-Ketoacyl-Acyl Carrier Protein Synthase III mtFabH

FACTORS INFLUENCING CATALYSIS AND SUBSTRATE SPECIFICITY*{boxs}

Alistair K. Brown{ddagger}§1, Sudharsan Sridharan¶1, Laurent Kremer||, Sandra Lindenberg§, Lynn G. Dover§, James C. Sacchettini¶, and Gurdyal S. Besra, A Lister-Jenner Research Fellow§2

From the {ddagger}School of Cellular and Molecular Biosciences, University of Newcastle upon Tyne, Newcastle upon Tyne, NE2 4HH, United Kingdom, §School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom, the Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843-2128, and ||Laboratoire de Dynamique Moléculaire des Interactions Membranaires, CNRS-UMR 5539, Université de Montpellier II, Case 107, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France

Mycolic acids are the dominant feature of the Mycobacterium tuberculosis cell wall. These {alpha}-alkyl, {beta}-hydroxy fatty acids are formed by the condensation of two fatty acids, a long meromycolic acid and a shorter C24-C26 fatty acid. The component fatty acids are produced via a combination of type I and II fatty acid synthases (FAS) with FAS-I products being elongated by FAS-II toward meromycolic acids. The {beta}-ketoacyl-acyl carrier protein (ACP) synthase III encoded by mtfabH (mtFabH) links FAS-I and FAS-II, catalyzing the condensation of FAS-I-derived acyl-CoAs with malonyl-acyl carrier protein (ACP). The acyl-CoA chain length specificity of mtFabH was assessed in vitro; the enzyme extended longer, physiologically relevant acyl-CoA primers when paired with AcpM, its natural partner, than with Escherichia coli ACP. The ability of the enzyme to use E. coli ACP suggests that a similar mode of binding is likely with both ACPs, yet it is clear that unique factors inherent to AcpM modulate the substrate specificity of mtFabH. Mutation of proposed key mtFabH residues was used to define their catalytic roles. Substitution of supposed acyl-CoA binding residues reduced transacylation, with double substitutions totally abrogating activity. Mutation of Arg46 revealed its more critical role in malonyl-AcpM decarboxylation than in the acyl-CoA binding role. Interestingly, this effect was suppressed intragenically by Arg161 -> Ala substitution. Our structural studies suggested that His258, previously implicated in malonyl-ACP decarboxylation, also acts as an anchor point for a network of water molecules that we propose promotes deprotonation and transacylation of Cys122.


Received for publication, November 23, 2004 , and in revised form, July 21, 2005.

The atomic coordinates and structure factors (codes 1M1M, 2AHB, and 2AJ9) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).

* This work was supported by The Medical Research Council, The Wellcome Trust, and the National Institutes of Health. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

{boxs} The on-line version of this article (available at http://www.jbc.org) contains supplemental Figs. S1 and S2.

1 These authors contributed equally to this work.

2 To whom correspondence should be addressed. Tel.: 44-121-415-8125; Fax: 44-121-414-5925; E-mail: g.besra{at}bham.ac.uk.


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