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J. Biol. Chem., Vol. 282, Issue 18, 13151-13159, May 4, 2007
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From the
INSERM, U655-LRMA F-75006 Paris France,
Université Pierre et Marie Curie-Paris6, Centre de Recherches Biomédicales des Cordeliers, F-75006 Paris, France, ¶Université Paris-Descartes, Facultéde Médecine René Descartes, Centre de Recherches Biomédicales des Cordeliers, F-75006 Paris, France, ||AP-HP, Hôpital Européen Georges Pompidou, F-75015 Paris, France, **Plateforme de Spectrométrie de Masse et de Protéomique, Muséum National d'Histoire Naturelle, Département Recherche Développement et Diversité Moléculaire, F-75005 Paris, France, and 
Medical and Research Services, Louis Stokes Cleveland Veterans Affairs Medical Center, Cleveland, Ohio 44106
We report here the first direct assessment of the specificity of a class of peptidoglycan cross-linking enzymes, the L,D-transpeptidases, for the highly diverse structure of peptidoglycan precursors of Gram-positive bacteria. The lone functionally characterized member of this new family of active site cysteine peptidases, Ldtfm from Enterococcus faecium, was previously shown to bypass the D,D-transpeptidase activity of the classical penicillin-binding proteins leading to high level cross-resistance to glycopeptide and
-lactam antibiotics. Ldtfm homologues from Bacillus subtilis (LdtBs) and E. faecalis (Ldtfs) were found here to cross-link their cognate disaccharide-peptide subunits containing meso-diaminopimelic acid (mesoDAP3) and L-Lys3-L-Ala-L-Ala at the third position of the stem peptide, respectively, instead of L-Lys3-D-iAsn in E. faecium. Ldtfs differed from Ldtfm and LdtBs by its capacity to hydrolyze the L-Lys3-D-Ala4 bond of tetrapeptide (L,D-carboxypeptidase activity) and pentapeptide (L,D-endopeptidase activity) stems, in addition to the common cross-linking activity. The three enzymes were specific for their cognate acyl acceptors in the cross-linking reaction. In contrast to Ldtfs, which was also specific for its cognate acyl donor, Ldtfm tolerated substitution of L-Lys3-D-iAsn by L-Lys3-L-Ala-L-Ala. Likewise, LdtBs tolerated substitution of mesoDAP3 by L-Lys3-D-iAsn and L-Lys3-L-Ala-L-Ala in the acyl donor. Thus, diversification of the structure of peptidoglycan precursors associated with speciation has led to a parallel evolution of the substrate specificity of the L,D-transpeptidases affecting mainly the recognition of the acyl acceptor. Blocking the assembly of the side chain could therefore be used to combat antibiotic resistance involving L,D-transpeptidases.
Received for publication, November 27, 2006 , and in revised form, January 18, 2007.
* This work was supported by the program "ACI Microbiologie 2003" from the Fonds National de la Science (Grant ACIM-4-9), the European Community (COBRA, contract LSHM-CT-2003-503335, 6th PCRD), NIAID, National Institutes of Health (Grant R01 AI45626), and the Fondation pour la Recherche Médicale. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 To whom correspondence should be addressed: INSERM U655-LRMA, Université Pierre et Marie Curie Centre de Recherches Biomédicales des Cordeliers, 15 Rue de l'Ecole de Médecine, 75270 Paris, Cedex 06, France. Tel.: 33-1-43-25-00-33; Fax: 33-1-43-25-68-12; E-mail: michel.arthur{at}bhdc.jussieu.fr.
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