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Originally published In Press as doi:10.1074/jbc.M701602200 on May 23, 2007
J. Biol. Chem., Vol. 282, Issue 32, 23194-23204, August 10, 2007
The SoxYZ Complex Carries Sulfur Cycle Intermediates on a Peptide Swinging Arm*
Véronique Sauvé ,
Stefano Bruno 1,
Ben C. Berks 2, and
Andrew M. Hemmings ¶3
From the
Department of Biochemistry, University of Oxford, Oxford OX1 3QU and the School of Biological Sciences and ¶School of Chemical Sciences and Pharmacy, University of East Anglia, Norwich NR4 7TJ, United Kingdom
The bacterial Sox (sulfur oxidizing) system allows the utilization of inorganic sulfur compounds in energy metabolism. Central to this process is the SoxYZ complex that carries the pathway intermediates on a cysteine residue near the C terminus of SoxY. Crystal structures have been determined for Paracoccus pantotrophus SoxYZ with the carrier cysteine in the underivatized state, conjugated to the polysulfide mimic -mercaptoethanol, and as the sulfonate adduct pathway intermediate. The carrier cysteine is located on a peptide swinging arm and is bracketed on either side by diglycine dipeptides acting as molecular universal joints. This structure provides a novel solution to the requirement that the cysteine-bound intermediates be able to access and orient themselves within the active sites of multiple partner enzymes. Adjacent to the swinging arm there is a conserved, deep, apolar pocket into which the -mercaptoethanol adduct extends. This pocket would be well suited to a role in protecting labile pathway intermediates from adventitious reactions.
Received for publication, February 23, 2007
, and in revised form, May 2, 2007.
* This work was supported by the Biotechnology and Biological Sciences Research Council Grants P15195
[GenBank]
and B15211. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
The on-line version of this article (available at http://www.jbc.org) contains supplemental "Experimental Procedures," Tables S1 and S2, and Figs. S1–S6.
The atomic coordinates and structure factors (code 2OX5, 2OXG, and 2OXH) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).
1 Present address: Dipartimento di Biochimica e Biologia Molecolare, Facoltà di Farmacia, Parco Area delle Scienze 23/A, 43100 Parma, Italy.
2 To whom correspondence may be addressed. Tel.: +44-1865-275250; Fax: +44-1865-275259; E-mail: ben.berks{at}bioch.ox.ac.uk. 3 To whom correspondence may be addressed. Tel.: +44-1603-592259; Fax: +44-1603-592250; E-mail: a.hemmings{at}uea.ac.uk.

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Copyright © 2007 by the American Society for Biochemistry and Molecular Biology.
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