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Originally published In Press as doi:10.1074/jbc.M703337200 on June 6, 2007

J. Biol. Chem., Vol. 282, Issue 32, 23231-23239, August 10, 2007
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Crystal Structure of Human Estrogen-related Receptor {alpha} in Complex with a Synthetic Inverse Agonist Reveals Its Novel Molecular Mechanism*

Joerg Kallen1, Rene Lattmann, Rene Beerli, Anke Blechschmidt, Marcel J. J. Blommers, Martin Geiser, Johannes Ottl, Jean-Marc Schlaeppi, Andre Strauss, and Brigitte Fournier

From the Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland

Inverse agonists of the constitutively active human estrogen-related receptor{alpha} (ERR{alpha}, NR3B1) are of potential interest for several disease indications (e.g. breast cancer, metabolic diseases, or osteoporosis). ERR{alpha} is constitutively active, because its ligand binding pocket (LBP) is practically filled with side chains (in particular with Phe328, which is replaced by Ala in ERRbeta and ERR{gamma}). We present here the crystal structure of the ligand binding domain of ERR{alpha} (containing the mutation C325S) in complex with the inverse agonist cyclohexylmethyl-(1-p-tolyl-1H-indol-3-ylmethyl)-amine (compound 1a), to a resolution of 2.3Å. The structure reveals the dramatic multiple conformational changes in the LBP, which create the necessary space for the ligand. As a consequence of the new side chain conformation of Phe328 (on helix H3), Phe510(H12) has to move away, and thus the activation helix H12 is displaced from its agonist position. This is a novel mechanism of H12 inactivation, different from ERR{gamma}, estrogen receptor (ER) {alpha}, and ERbeta. H12 binds (with a surprising binding mode) in the coactivator groove of its ligand binding domain, at a similar place as a coactivator peptide. This is in contrast to ERR{gamma} but resembles the situation for ER{alpha} (raloxifene or 4-hydroxytamoxifen complexes). Our results explain the novel molecular mechanism of an inverse agonist for ERR{alpha} and provide the basis for rational drug design to obtain isotype-specific inverse agonists of this potential new drug target. Despite a practically filled LBP, the finding that a suitable ligand can induce an opening of the cavity also has broad implications for other orphan nuclear hormone receptors (e.g. the NGFI-B subfamily).


Received for publication, April 20, 2007 , and in revised form, June 6, 2007.

* The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

The atomic coordinates and structure factors (code 2PJL) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).

1 To whom correspondence should be addressed. E-mail: Joerg.kallen{at}novartis.com.


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