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Originally published In Press as doi:10.1074/jbc.M703518200 on June 13, 2007
J. Biol. Chem., Vol. 282, Issue 32, 23473-23481, August 10, 2007
Structural Insights into Catalysis and Inhibition of O-Acetylserine Sulfhydrylase from Mycobacterium tuberculosisCRYSTAL STRUCTURES OF THE ENZYME -AMINOACRYLATE INTERMEDIATE AND AN ENZYME-INHIBITOR COMPLEX*
Robert Schnell 1,
Wulf Oehlmann ,
Mahavir Singh ¶, and
Gunter Schneider 2
From the
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 77 Stockholm, Sweden, LIONEX GmbH, Inhoffenstrasse 7, 38124 Braunschweig, Germany and the ¶Helmholtz Center for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany
Cysteine biosynthetic genes are up-regulated in the persistent phase of Mycobacterium tuberculosis, and the corresponding enzymes are therefore of interest as potential targets for novel antibacterial agents. cysK1 is one of these genes and has been annotated as coding for an O-acetylserine sulfhydrylase. Recombinant CysK1 is a pyridoxal phosphate (PLP)-dependent enzyme that catalyzes the conversion of O-acetylserine to cysteine. The crystal structure of the enzyme was determined to 1.8Å resolution. CysK1 belongs to the family of fold type II PLP enzymes and is similar in structure to other O-acetylserine sulfhydrylases. We were able to trap the -aminoacrylate reaction intermediate and determine its structure by cryocrystallography. Formation of the aminoacrylate complex is accompanied by a domain rotation resulting in active site closure. The aminoacrylate moiety is bound in the active site via the covalent linkage to the PLP cofactor and by hydrogen bonds of its carboxyl group to several enzyme residues. The catalytic lysine residue is positioned such that it can protonate the C -carbon atom of the aminoacrylate only from the si-face, resulting in the formation of L-cysteine. CysK1 is competitively inhibited by a four-residue peptide derived from the C-terminal of serine acetyl transferase. The crystallographic analysis reveals that the peptide binds to the enzyme active site, suggesting that CysK1 forms an bi-enzyme complex with serine acetyl transferase, in a similar manner to other bacterial and plant O-acetylserine sulfhydrylases. The structure of the enzyme-peptide complex provides a framework for the design of strong binding inhibitors.
Received for publication, April 27, 2007
, and in revised form, May 30, 2007.
The atomic coordinates and structure factors (code 2Q3B, 2Q3D, and 2Q3C) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).
* This work was supported by the European Commission Contract LSHP-CT-2005-018729. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
The on-line version of this article (available at http://www.jbc.org) contains two supplemental figures.
1 Supported by the David and Astrid Hageléns Foundation.
2 To whom correspondence should be addressed: Dept. of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 77 Stockholm, Sweden. E-mail: Gunter.Schneider{at}ki.se.

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Copyright © 2007 by the American Society for Biochemistry and Molecular Biology.
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