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Originally published In Press as doi:10.1074/jbc.M801145200 on March 26, 2008

J. Biol. Chem., Vol. 283, Issue 22, 15152-15159, May 30, 2008
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X-ray Structure of 4,4'-Dihydroxybenzophenone Mimicking Sterol Substrate in the Active Site of Sterol 14{alpha}-Demethylase (CYP51)*Formula {diamondsuit}

Ali Nasser Eddine{ddagger}, Jens P. von Kries§, Mikhail V. Podust, Thulasi Warrier{ddagger}, Stefan H. E. Kaufmann{ddagger}, and Larissa M. Podust1

From the {ddagger}Max-Planck-Institute for Infection Biology, Berlin, 10117, Germany, the §Screening Unit, Leibniz-Institute for Molecular Pharmacology (FMP), Berlin, 13125, Germany, and the Department of Pharmaceutical Chemistry, University of California, San Francisco, California 94158

A universal step in the biosynthesis of membrane sterols and steroid hormones is the oxidative removal of the 14{alpha}-methyl group from sterol precursors by sterol 14{alpha}-demethylase (CYP51). This enzyme is a primary target in treatment of fungal infections in organisms ranging from humans to plants, and development of more potent and selective CYP51 inhibitors is an important biological objective. Our continuing interest in structural aspects of substrate and inhibitor recognition in CYP51 led us to determine (to a resolution of 1.95Å) the structure of CYP51 from Mycobacterium tuberculosis (CYP51Mt) co-crystallized with 4,4'-dihydroxybenzophenone (DHBP), a small organic molecule previously identified among top type I binding hits in a library screened against CYP51Mt. The newly determined CYP51Mt-DHBP structure is the most complete to date and is an improved template for three-dimensional modeling of CYP51 enzymes from fungal and prokaryotic pathogens. The structure demonstrates the induction of conformational fit of the flexible protein regions and the interactions of conserved Phe-89 essential for both fungal drug resistance and catalytic function, which were obscure in the previously characterized CYP51Mt-estriol complex. DHBP represents a benzophenone scaffold binding in the CYP51 active site via a type I mechanism, suggesting (i) a possible new class of CYP51 inhibitors targeting flexible regions, (ii) an alternative catalytic function for bacterial CYP51 enzymes, and (iii) a potential for hydroxybenzophenones, widely distributed in the environment, to interfere with sterol biosynthesis. Finally, we show the inhibition of M. tuberculosis growth by DHBP in a mouse macrophage model.


Received for publication, February 12, 2008 , and in revised form, March 13, 2008.

The atomic coordinates and structure factors (code 2VKU) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).

* This work was supported, in whole or in part, by National Institutes of Health RO1 Grant GM078553 (to L. M. P.). This work was also supported by U.S. Civilian Research and Development Foundation Grant RUB1-2806-MO-06 (to L. M. P.) and by the X-Mtb consortium Bundesministerium fuer Bildung und Forschung/Projekttraeger Juelich Grants BIO/0312992A (to J. P. K.) and 0312992C (to S. H. E. K. and A. N. E.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Formula The on-line version of this article (available at http://www.jbc.org) contains a supplemental figure.

{diamondsuit} This article was selected as a Paper of the Week.

1 To whom correspondence should be addressed: Dept. of Pharmaceutical Chemistry, University of California, 600 16th St., San Francisco, CA 54158-2280. Fax: 415-502-4728; E-mail: larissa.podust{at}ucsf.edu.


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