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A more recent version of this article appeared on September 16, 2005
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C500319200v1
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Papers In Press, published online ahead of print July 28, 2005
J. Biol. Chem, 10.1074/jbc.C500319200
Submitted on July 20, 2005
Accepted on July 28, 2005

A peptide core motif for binding to heterotrimeric G protein alpha subunits

William W. Ja, Anirban Adhikari, Ryan J. Austin, Stephen R. Sprang, and Richard W. Roberts

Department of Chemistry, Califiornia Institute of Technology, Pasadena, CA 91125

Corresponding Author: rroberts{at}caltech.edu

Recently, in vitro selection using mRNA display was used to identify a novel peptide sequence that binds with high affinity to Gi{alpha1}. The peptide was minimized to a 9-residue sequence (R6A-1) that retains high affinity and specificity for the GDP-bound state of Gi{alpha1} and acts as a guanine nucleotide dissociation inhibitor (GDI). Here, we demonstrate that the R6A-1 peptide interacts with G{alpha} subunits representing all four G protein classes, acting as a core motif for G{alpha} interaction. This contrasts with the consensus G protein regulatory (GPR) sequence, a 28-mer peptide GDI derived from the GoLoco/GPR motif that shares no homology with R6A-1 and binds only to Gi{alpha1-3} in this assay. Binding of R6A-1 is generally specific to the GDP-bound state of the G{alpha} subunits and excludes association with G{betagamma }. R6A-Gi{alpha1} complexes are resistant to trypsin digestion and exhibit distinct stability in the presence of Mg2+, suggesting that the R6A and GPR peptides exert their activities using different mechanisms. Studies using Gi{alpha1}/Gs{alpha} chimeras identify two regions of Gi{alpha1} (residues 1-35 and 57-88) as determinants for strong R6A-Gi{alpha1} interaction. Residues flanking the R6A-1 peptide confer unique binding properties, indicating that the core motif could be used as a starting point for the development of peptides exhibiting novel activities and/or specificity for particular G protein subclasses or nucleotide-bound states.


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