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A more recent version of this article appeared on November 2, 2001
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M106212200v1
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Papers In Press, published online ahead of print September 10, 2001
J. Biol. Chem, 10.1074/jbc.M106212200
Submitted on July 3, 2001
Revised on September 5, 2001
Accepted on September 9, 2001

Fidelity of Uracil-initiated base excision DNA repair in DNA polymerase beta proficient and deficient mouse embryonic fibroblast cell extracts

Samuel E Bennett, Jung-Suk Sung, and Dale W. Mosbaugh

Environmental and Molecular Toxicology, Oregon State University, Corvallis, OR 97331-7301

Corresponding Author: mosbaugd{at}ucs.orst.edu

Uracil-initiated base excision DNA repair was conducted using homozygous mouse embryonic fibroblast DNA polymerase beta (+/+) and (-/-) cells to determine the error frequency and mutational specificity associated with the completed repair process. Form I DNA substrates were constructed with site-specific uracil residues at U•A, U•G, and U•T targets contained within the lacZalpha gene of M13mp2 DNA. Efficient repair was observed in both DNA polymerase beta (+/+) and (-/-) cell-free extracts. Repair was largely dependent on uracil-DNA glycosylase activity since addition of the PBS-2 uracil-DNA glycosylase inhibitor (Ugi) protein reduced (~ 88 %) the initial rate of repair in both types of cell-free extracts. In each case, the DNA repair patch size was primarily distributed between 1-8 nucleotides in length with one nucleotide repair patches constituting ~20 % of the repair events. Addition of p21 peptide or protein to DNA polymerase beta (+/+) cell-free extracts increased the frequency of short patch (one nucleotide) repair by ~2-fold. The base substitution reversion frequency associated with uracil-DNA repair of M13mp2op14 (U•T) DNA was determined to be 5.7-7.2 x 10-4 when using DNA polymerase beta (+/+) and (-/-) cell-free extracts. In these two cases, the error frequency was very similar but the mutational spectrum was noticeably different. The presence or absence of Ugi did not dramatically influence either the error rate or mutational specificity. In contrast, the combination of Ugi and p21 protein promoted an increase in the mutation frequency associated with repair of M13mp2 (U•G) DNA. Examination of the mutational spectra generated by a forward mutation assay revealed that errors in DNA repair synthesis occurred predominately at the position of the U•G target and frequently involved a one-base deletion or incorporation of dTMP.


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