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A more recent version of this article appeared on March 8, 2002
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M106372200v1
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Papers In Press, published online ahead of print December 26, 2001
J. Biol. Chem, 10.1074/jbc.M106372200
Submitted on July 9, 2001
Revised on November 5, 2001
Accepted on December 25, 2001

Interaction of human nuclear topoisomerase I with guanosine-quartet-forming and guanosine-rich single-stranded DNA and RNA oligonucleotides

Christophe Marchand, Philippe Pourquier, Gary Laco, Naijie Jing, and Yves Pommier

Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892

Corresponding Author: marchanc{at}mail.nih.gov

Human nuclear DNA topoisomerase I (top1) plays a crucial role in DNA replication, transcription and chromosome condensation. In this study, we show that intra- and inter-molecular guanosine-quartets (G-quartets) can inhibit top1-mediated DNA cleavage at a high affinity site. Top1-mediated DNA cleavage was also inhibited by a 16-mer single-stranded oligodeoxynucleotide (ODN) containing a G-rich sequence (G2T2G5TG2TG3) and by its RNA equivalent, which do not form G-quartet structures. Comparison of various single-stranded ODN for their ability to inhibit top1-mediated DNA cleavage indicated that G-rich sequences containing repeats of 2 or 3 consecutive guanines interspaced with thymines specifically inhibited top1. We also found that both single-stranded and G-quartet-forming ODNs bind to top1 without being cleaved by the enzyme. These results demonstrate that either DNA or RNA G-rich single-stranded and G-quartet-forming oligonucleotides can bind to top1 and prevent cleavage of duplex DNA.


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