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Papers In Press, published online ahead of print May 15, 2004
J. Biol. Chem, 10.1074/jbc.M400693200
Submitted on January 21, 2004
Revised on May 10, 2004
Accepted on May 13, 2004

Enhancement by effectors and substrate nucleotides of R1: R2 interactions in Escherichia coli class Ia ribonucleotide reductase

Alex Kasrayan, Pernilla Larsson Birgander, Lucia Pappalardo, Karin Regnström, MariAnn Westman, Agneta Slaby, Euan Gordon, and Britt-Marie Sjöberg

Department of Molecular Biology and Functional Genomics, Stockholm University, Stockholm, Stockholm SE-10691

Corresponding Author: britt-marie.sjoberg{at}molbio.su.se

Ribonucleotide reductases are a family of essential enzymes that catalyze the reduction of ribonucleotides to their corresponding deoxyribonucleotides and provide cells with precursors for DNA synthesis. The different classes of ribonucleotide reductase are distinguished based on quaternary structures and enzyme activation mechanisms, but the components harboring the active site region in each class are evolutionary related. With few exceptions, ribonucleotide reductases are allosterically regulated by nucleoside triphosphates (ATP and dNTPs). We have used the surface plasmon resonance technique to study how allosteric effects govern the strength of quaternary interactions in the class Ia ribonucleotide reductase from Escherichia coli, which like all class I enzymes has a tetrameric alpha 2beta 2 structure. The alpha 2 component called R1 harbors the active site and two types of binding sites for allosteric effector nucleotides, whereas the beta 2 component called R2 harbors the tyrosyl radical necessary for catalysis. Our results show that only known allosteric effector nucleotides, but not non-interacting nucleotides, promote a specific interaction between R1 and R2. Interestingly, the presence of substrate together with allosteric effector nucleotide strengthens the complex 2-3 times, with a similar free energy change as the mutual allosteric effects of substrate and effector nucleotide binding to protein R1 in solution experiments. The dual allosteric effects of dATP as positive allosteric effector at low concentrations and as negative allosteric effector at high concentrations coincided with an almost 100-fold stronger R1:R2 interaction. Based on the experimental setup, we propose that the inhibition of enzyme activity in the E. coli class Ia enzyme occurs in a tight 1:1 complex of R1 and R2. Most intriguingly, we also discovered that thioredoxin, one of the physiological reductants of ribonucleotide reductases, enhances the R1:R2 interaction 4-fold.


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R. Rofougaran, M. Crona, M. Vodnala, B.-M. Sjoberg, and A. Hofer
Oligomerization Status Directs Overall Activity Regulation of the Escherichia coli Class Ia Ribonucleotide Reductase
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J. Biol. Chem.Home page
P. L. Birgander, S. Bug, A. Kasrayan, S.-L. Dahlroth, M. Westman, E. Gordon, and B.-M. Sjoberg
Nucleotide-dependent Formation of Catalytically Competent Dimers from Engineered Monomeric Ribonucleotide Reductase Protein R1
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[Abstract] [Full Text] [PDF]




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