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Papers In Press, published online ahead of print May 18, 2005
J. Biol. Chem, 10.1074/jbc.M501890200
Submitted on February 18, 2005
Revised on May 13, 2005
Accepted on May 18, 2005

Y25S variant of Paracoccus pantotrophus cytochrome cd1 provides insight into anion binding by d1 heme and a rare example of a critical difference between solution and crystal structures

Richard S. Zajicek, Myles R. Cheesman, Euan H. J. Gordon, and Stuart J. Ferguson

Department of Biochemistry, Oxford University, Oxford, Oxfordshire OX1 3QU

Corresponding Author: ferguson{at}bioch.ox.ac.uk

Tyr25 is a ligand to the active site d1 heme in as prepared, oxidized cytochrome cd1 nitrite reductase from Paracoccus pantotrophus. This form of the enzyme requires reductive activation, a process that involves not only displacement of Tyr25 from the d1 heme but also switching of the ligands at the c heme from bis-histidinyl to His/Met. A Y25S variant retains this bis-histidinyl coordination in the crystal of the oxidized state which has sulfate bound to the d1 heme iron. This Y25S form of the enzyme does not require reductive activation, an observation previously interpreted as meaning that the presence of the phenolate oxygen of Tyr25 is the critical determinant of the requirement for activation. This interpretation now needs re-evaluation because, unexpectedly, the oxidized as prepared Y25S protein, unlike the wild type, has different heme iron ligands in solution at room temperature, as judged by magnetic circular dichroism and electron spin resonance spectroscopies, than in the crystal. In addition, the binding of nitrite and cyanide to oxidized Y25S cytochrome cd1 is markedly different from the wild type enzyme, thus providing insight into the affinity of the oxidized d1 heme ring for anions in the absence of the steric barrier presented by Tyr25.


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K. A. Sam, S. A. Fairhurst, R. N. F. Thorneley, J. W. A. Allen, and S. J. Ferguson
Pseudoazurin Dramatically Enhances the Reaction Profile of Nitrite Reduction by Paracoccus pantotrophus Cytochrome cd1 and Facilitates Release of Product Nitric Oxide
J. Biol. Chem., May 2, 2008; 283(18): 12555 - 12563.
[Abstract] [Full Text] [PDF]




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