Papers In Press, published online ahead of print April 4, 2006
J. Biol. Chem, 10.1074/jbc.M511727200
Submitted on October 31, 2005
Accepted on April 3, 2006
Multivariate design and evaluation of a set of RGRPQ-derived innate immunity peptides
Mirva Drobni, Ing-Marie Olsson, Christer Eriksson, Fredrik Almqvist, and Nicklas Strömberg
Department of Odontology/Cariology, Umeå University, Umeå, Umeå 901 87
Corresponding Author: nicklas.stromberg{at}odont.umu.se
Oral commensal Streptococcus gordonii proteolytically cleave the salivary PRP-1 polypeptide into an RGRPQ innate peptide. The R and Q termini are crucial for RGRPQ-mediated ammonia production and proliferation by S. gordonii SK12 and adhesion inhibition and desorption by Actinomyces naeslundii T14V, respectively. Here we have applied i) a multivariate approach using RGRPQ-related peptides varied at amino acids 2, 3 and 4 simultaneously and ii) size and N- and C-terminal modifications of RGRPQ to generate structure activity information. While the N-terminal arginine motif mediated ammonia production independent of peptide size, other responses required more or less full length peptide motifs. The motifs for adhesion inhibition and desorption were the same. The adhesion and proliferation motifs required similarily a hydrophobic/low polarity amino acid 4 but differentially a hydrophilic or hydrophobic character of amino acids 2/3, respectively; polar peptides with small/hydrophilic and hydrophilic amino acids 2 and 3, respectively, had high adhesion inhibition/desorption activity, and lipophilic peptides with large/hydrophobic amino acids 2 and 3 high proliferation activity. Accordingly, while RIWWQ had increased proliferation but abolished adhesion/desorption activity, peptides designed with hydrophilic amino acids 2 and 3 were predicted to behave in the opposite way. Moreover, a RGRPQ mimetic for all three responses should mimic small hydrophilic, large nitrogen containing and hydrophobic/low polarity amino acids 2, 3 and 4, respectively. Peptides fulfilling these criteria were 1 to 1.6-fold improved in all three responses. Thus, both mimetics and peptides with differential proliferation and adhesion activities may be generated for evaluation in biofilm models.