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Papers In Press, published online ahead of print January 26, 2006
Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Okazaki 444-8787
Corresponding Author: teizo{at}ims.ac.jp
The UV and visible resonance Raman spectra are reported for CooA from Rhodospirillum rubrum, which is a transcriptional regulator activated by growth in a CO atmosphere. CO binding to heme in its sensor domain causes rearrangement of its DNA-binding domain, allowing binding of DNA with a specific sequence. The sensor and DNA-binding domains are linked by a hinge region that follows a long C-helix. UV resonance Raman bands arising from Trp110 in the C-helix revealed local movement around Trp110 upon CO binding. The indole side-chain of Trp110, which is exposed to solvent in the CO-free ferrous state, becomes buried in the CO-bound state with a slight change in its orientation but maintains a hydrogen bond with a water molecule at the indole nitrogen. This is the first experimental data supporting a previously proposed model involving displacement of the C-helix and heme sliding. The UV resonance Raman spectra for the CooA-DNA complex indicated that binding of DNA to CooA induces a further displacement of the C-helix in the same direction during transition to the complete active conformation. The Fe-CO and C-O stretching bands showed frequency shifts upon DNA binding, but the Fe-His stretching band did not. Moreover, CO geminate recombination was more efficient in the DNA-bound state. These results suggest that the C-helix displacement in the DNA-bound form causes the CO binding pocket to narrow and become more negative.
J. Biol. Chem, 10.1074/jbc.M513261200
Submitted on December 13, 2005
Revised on January 23, 2006
Accepted on January 25, 2006
Evidence for displacements of the C-helix by CO ligation and DNA binding to CooA revealed by UV resonance raman spectroscopy
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