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A more recent version of this article appeared on May 19, 2006
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M600996200v1
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Papers In Press, published online ahead of print March 27, 2006
J. Biol. Chem, 10.1074/jbc.M600996200
Submitted on February 1, 2006
Revised on March 22, 2006
Accepted on March 27, 2006

Molecular basis of formaldehyde detoxification: Characterization of two s-formylglutathione hydrolases from Escherichia coli, FrmB and YeiG

Claudio F. Gonzalez, Michael Proudfoot, Greg Brown, Yurij Korniyenko, Hirotada Mori, Alexei V. Savchenko, and Alexander F. Yakunin

Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario M5G 1L6

Corresponding Author: a.iakounine{at}utoronto.ca

The E. coli genes frmB (yaiM) and yeiG encode two uncharacterized proteins that share 54% sequence identity and contain a serine esterase motif. We demonstrated that purified FrmB and YeiG have high carboxylesterase activity against the model substrates, p-nitrophenyl esters of fatty acids (C2 to C6) and a-naphthyl acetate. However, both proteins had highest hydrolytic activity toward S-formylglutathione, an intermediate of the glutathione-dependent pathway of formaldehyde detoxification. With this substrate, both proteins had similar affinity (Km = 0.41-0.43 mM), but FrmB was almost 5 times more active. Alanine replacement mutagenesis of YeiG demonstrated that Ser145, Asp233, and His256 are absolutely required for activity indicating that these residues represent a serine hydrolase catalytic triad in this protein and in other S-formylglutathione hydrolases. This was confirmed by inspecting the crystal structure of the Saccharomyces cerevisiae S-formylglutathione hydrolase YJG8 (PDB code 1pv1), which has 45% sequence identity to YeiG. The structure revealed a canonical a/b-hydrolase fold and a classical serine hydrolase catalytic triad (Ser161, His276, Asp241). In E. coli cells, the expression of frmB was stimulated 45-75 times by the addition of formaldehyde to the growth medium, whereas YeiG was found to be a constitutive enzyme. The simultaneous deletion of both frmB and yeiG genes was required to increase the sensitivity of the growth of E. coli cells to formaldehyde suggesting that both FrmB and YeiG contribute to the detoxification of formaldehyde. Thus, FrmB and YeiG are S-formylglutathione hydrolases with a Ser-His-Asp catalytic triad involved in the detoxification of formaldehyde in E. coli.


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