Papers In Press, published online ahead of print July 7, 2006
J. Biol. Chem, 10.1074/jbc.M603093200
Submitted on March 31, 2006
Revised on June 15, 2006
Accepted on July 7, 2006
The C-terminal zinc finger of UvrA does not bind DNA directly, but regulates damage-specific DNA binding
Deborah L. Croteau, Matthew J. DellaVecchia, Hong Wang, Rachelle J. Bienstock, Mark A. Melton, and Bennett Van Houten
Laboratory of Molecular Genetics, NIEHS, Research Triangle Park, NC 27709
Corresponding Author: vanhout1{at}niehs.nih.gov
In prokaryotic nucleotide excision repair, UvrA recognizes DNA perturbations and recruits UvrB for the recognition and processing steps in the reaction. One of the most remarkable aspects of UvrA is that it can recognize a wide range of DNA lesions that differ in chemistry and structure. However, how UvrA interacts with DNA is unknown. In order to examine the role that UvrA's C terminal zinc finger domain plays in DNA binding, an eleven amino acid deletion was constructed, (ZnG UvrA). Biochemical characterization of the ZnG UvrA protein was carried out using UvrABC DNA incision, DNA binding and ATPase assays. Although ZnG UvrA was able to bind dsDNA slightly better than Wt UvrA, the ZnG UvrA mutant only supported 50-75% of wild type (Wt) incision. Surprisingly, the ZnG UvrA mutant, while retaining its ability to bind dsDNA, did not support damage-specific binding. Furthermore, this mutant protein only provided 10% of Wt Bca UvrA complementation for UV survival of an uvrA deletion strain. In addition, ZnG UvrA failed to stimulate UvrB's DNA damage associated ATPase activity. Electrophoretic mobility shift analysis was used to monitor UvrB loading onto damaged DNA with Wt UvrA or ZnG UvrA. The ZnG UvrA protein showed a 30-60% reduction in UvrB loading as compared to the amount of UvrB loaded by Wt UvrA. These data demonstrate that the C terminal zinc finger of UvrA is required for regulation of damage-specific DNA binding.