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M708691200v1
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Papers In Press, published online ahead of print January 4, 2008
J. Biol. Chem, 10.1074/jbc.M708691200
Submitted on October 19, 2007
Revised on January 4, 2008
Accepted on January 4, 2008

The positively charged surface of herpes simplex virus UL42 mediates DNA binding

Gloria Komazin-Meredith, Webster L. Santos, David J. Filman, James M. Hogle, Gregory L. Verdine, and Donald M. Coen

Dept. of Biological Chem. & Mole. Pharmacology, Harvard Medical School, Boston, MA 02115

Corresponding Author: don_coen{at}hms.harvard.edu

Herpes simplex virus DNA polymerase is a heterodimer composed of UL30, a catalytic subunit, and UL42, a processivity subunit. Mutations that decrease DNA binding by UL42 decrease long chain DNA synthesis by the polymerase. The crystal structure of UL42 bound to the C-terminus of UL30 revealed an extensive positively charged surface (“back face”). We tested two hypotheses: 1) The C-terminus of UL30 affects DNA binding, and 2) the positively charged back face mediates DNA binding. Addressing the first hypothesis, we found that the presence of a peptide corresponding to the UL30 C-terminus did not result in altered binding of UL42 to DNA. Addressing the second hypothesis, previous work showed that substitution of four conserved arginine residues on the basic face with alanines resulted in decreased DNA affinity. We tested the affinities for DNA and the stimulation of long chain DNA synthesis of mutants in which the four conserved arginine residues were substituted individually or together with lysines, and also a mutant in which a conserved glutamine residue was substituted with an arginine to increase positive charge on the back face. We also engineered cysteines onto this surface to permit disulfide cross-linking studies. Lastly, we assayed the effects of ionic strength on DNA binding by UL42 to estimate the number of ions released upon binding. Our results taken together strongly suggest that the basic back face of UL42 contacts DNA and that positive charge on this surface is important for this interaction.


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Proc. Natl. Acad. Sci. USAHome page
G. Komazin-Meredith, R. Mirchev, D. E. Golan, A. M. van Oijen, and D. M. Coen
Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion
PNAS, August 5, 2008; 105(31): 10721 - 10726.
[Abstract] [Full Text] [PDF]




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