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Volume 270,
Number 1,
Issue of January 6, 1995 pp. 236-243
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
In
Male Mouse Germ Cells, Copper-Zinc Superoxide Dismutase Utilizes
Alternative Promoters That Produce Multiple Transcripts with Different
Translation Potential (*)
(Received for publication, August 2, 1994; and in revised form, October 28, 1994 )
Wei
Gu
(1),
Carlos
Morales
(2),
Norman
B.
Hecht
(1)(§)From the
(1)Department of Biology, Tufts University,
Medford, Massachusetts 02155 and the
(2)Department of Anatomy, McGill University,
Montreal, Quebec H3A 2B2, Canada
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
Copper-zinc superoxide dismutase (SOD-1) is an enzyme that is
widely expressed in eukaryotic cells and performs a vital role in
protecting cells against free radical damage. In mouse testis, three
different sizes of SOD-1 mRNAs of about 0.73, 0.80, and 0.93 kilobases
(kb) are detected. The 0.73-kb mRNA is found in early stages of male
germ cells and in all somatic tissues. The mRNAs of 0.80 and 0.93 kb
are exclusively detected in post-meiotic germ cells. RNase H digestions
and Northern blot analyses reveal that the three SOD-1 mRNAs are
derived from two transcripts, a ubiquitously expressed transcript and a
post-meiotic transcript, which differ by 114-120 nucleotides.
RNase protection assays demonstrate that the additional nucleotides
present in the post-meiotic mRNA are solely in the 5`-untranslated
region. Using a probe derived from the 5`-untranslated region of the
0.93-kb SOD-1 mRNA, we have established that it originates from an
alternative upstream promoter contiguous with the somatic SOD-1
promoter. Polysomal gradient analysis of the three mouse testis SOD-1
mRNAs reveals that the 0.93-kb SOD-1 mRNA is primarily non-polysomal,
while the 0.80- and 0.73-kb SOD-1 mRNAs are mostly polysome associated.
A faster migrating form of the 0.93-kb SOD-1 mRNA is present on
polysomes as a result of partial deadenylation. In a cell-free
translation system, the 0.73-kb SOD-1 mRNA translates about 2-fold more
efficiently than the 0.93-kb SOD-1 mRNA. These data demonstrate that
male germ cells transcribe two size classes of SOD-1 mRNAs with
different translation potential by utilizing two different promoters,
post-meiotic SOD-1 mRNAs undergo adenylation changes, and one of the
post-meiotic SOD-1 mRNAs is transcribed during mid-spermiogenesis and
translated days later in a partially deadenylated form.
INTRODUCTION
Superoxide dismutase (SOD) ( )is an essential enzyme
in the cellular pathway that inactivates free radicals. SOD converts
superoxide anion radicals into oxygen and hydrogen peroxide, which in
turn are converted by catalase into water. Although several isozymes of
SOD have been detected (McCord and Fridovich, 1969; Barra et
al., 1984; Marklund, 1982), the copper-zinc SOD (SOD-1) is the
primary superoxide dismutase isozyme present in a wide variety of cells
(Crapo et al., 1992). In mammals, the SOD-1 gene is highly
conserved, consisting of five exons with similar splicing sites (Kim et al., 1993; Levanon et al., 1985; Benedetto et
al., 1991) and encoding a protein of about 16 kDa (Sherman et
al., 1984; Hsu et al., 1992). Moreover, the 225
nucleotides flanking the transcriptional start site of the SOD-1 gene
are also strongly conserved, showing similarities of 84% between rat
and mouse, 56% between rat and human, and 54% between mouse and human
(Hsu et al., 1992). Although SOD-1 is encoded by a single copy
gene (Levanon et al., 1985), two SOD-1 mRNAs differing by
about 200 nucleotides have been found in human tissue culture cells
(Lieman-Hurwitz et al., 1982). The two mRNAs have identical
5`-untranslated regions (UTRs) and coding regions, but they differ in
their 3`-UTRs (Sherman et al., 1984). In contrast, only one
mRNA of about 0.70 kb has been detected in the somatic tissues of rat
and mouse (Delabar et al., 1987; Benedetto et al.,
1991). Recently, two transcripts of 0.77 and 0.94 kb have been reported
in rat testis (Jow et al., 1993). Since spermatozoa are
highly vulnerable to free radical damage and SOD-1 plays an important
role in preventing oxidative injury, we have begun to investigate the
regulation of genes such as SOD-1 that can protect male germ cells from
reactive oxygen species. Here, we present evidence for three size
classes of SOD-1 mRNAs in the mouse testis; one, a post-meiotic
transcript, is translationally controlled during mouse spermiogenesis.
We also demonstrate that haploid germ cells transcribe two different
SOD-1 mRNAs by utilizing the somatic SOD-1 promoter and an alternative
upstream testis-specific promoter. The extended 5`-UTR of the longest
post-meiotic SOD-1 mRNA may fine tune synthesis of SOD-1 in late stages
of germ cell development since it is less efficiently translated in
vitro and in vivo.
EXPERIMENTAL PROCEDURES
RNA Purification and Northern Blot
HybridizationCD-1 mice were purchased from Charles River
Laboratories. Round spermatids and elongating spermatids were isolated
by sedimenting a dissociated testicular cell suspension at unity
gravity over a linear 2-4% bovine serum albumin gradient in a
Staput chamber (Romrell et al., 1976). Total RNA was isolated
from adult mouse testis, liver, heart, kidney, brain, the testes of
prepuberal mice of 6, 12, 17, 22, and 25 days of age, and isolated germ
cell populations by the method of Alcivar et al.(1989).
Northern blot hybridizations were performed as previously described (Gu et al., 1994).
RNase H DigestionsThe method of Nanbu et al.(1991) was used. RNA aliquots (15 µg) were denatured
in 80% formamide at 65 °C for 10 min and annealed with 15 µg of
oligo(dT) (Pharmacia Biotech Inc.) or with 1 µg of an
oligonucleotide complementary to the SOD-1 mRNA (described below) for
90 min at 50 °C in 10 mM Pipes, pH 6.4, 40% formamide, 0.4 M NaCl, and 1 mM EDTA. The hybridized nucleic acids
were ethanol precipitated, dried, resuspended in 100 µl of RNase H
digestion buffer (20 mM Tris, pH 7.4, 100 mM KCl, 10
mM MgCl , and 0.1 mM dithiothreitol), and
incubated with 6 units of RNase H for 45 min at 37 °C. The samples
were extracted twice with phenol-chloroform, and the cleaved RNAs were
precipitated with ethanol. The precipitates were electrophoresed in 1%
agarose gels and analyzed by Northern blotting.
Isolation of SOD-1 cDNAs and the 5`-Flanking Region
of the SOD-1 GeneSOD-1 cDNAs were isolated from a mouse
testis round spermatid lambda gt11 library (kindly provided by Dr. E.
M. Eddy of NIEHS) by plaque hybridization (Maniatis et al.,
1982) with a P-labeled cDNA probe encoding 500 bp of the
mouse SOD-1 cDNA (kindly provided by Dr. Gordon, Mt. Sinai Medical
Center, NY). After screening approximately 1 10 clones, 10 positive clones were isolated, and the inserts of four
of the clones were PCR amplified using lambda gt11 primers. Polymerase
chain reactions were performed using a Perkin-Elmer Thermal Cycler
(Perkin-Elmer Corp.). 25 cycles (1 min at 94 °C, 1 min at 50
°C, and 1 min at 72 °C) were performed in 50-µl aliquots of
10 mM Tris, pH 8.3, 4 mM MgCl , 0.2 mM dATP, dCTP, dGTP, dTTP, 2 mM dithiothreitol, 50 mM KCl, and 1 unit of Taq polymerase (AmpliTaq, Perkin-Elmer
Corp.). Reaction products were electrophoresed in 1.2 or 3% agarose
gels and gel purified. The PCR products of four clones were subcloned
into the TA cloning vector (Invitrogen), and sequence analysis was
performed by the Sanger dideoxy chain termination method.A 0.9-kb
mouse genomic DNA fragment that contains the first exon and the
5`-flanking region of the SOD-1 gene was isolated by digestion of a
16-kb fragment of SOD-1 genomic DNA (kindly provided by Dr. Gordon, Mt.
Sinai Medical Center) with restriction enzymes BamHI and SmaI. The fragment was subcloned into a pGEM 3Z vector and
sequenced by the Sanger dideoxy chain termination method.
Oligonucleotides Complementary to
SOD-1Two oligonucleotides, RH1 and RH2 (purchased from
Operon Technologies), were used for RNase H digestions. RH1
(5`-CGCCATGCTTCCCCGGAAGAC-3`) is complementary to nucleotides
91-111 of the somatic SOD-1 mRNA (Benedetto et al.,
1991). RH2 (5`-GAGGGTAGCAGTTGAGTCTG-3`) is complementary to nucleotides
596-616 of the somatic SOD-1 mRNA. For the RNase protection
assays, a 335-bp DNA fragment was amplified using RH1 and RP1, an
oligonucleotide (5`-TCACAGTTAGAAGACAATAG-3`) that is complementary to
nucleotides -224 to -205 of the SOD-1 gene. To detect the
post-meiotic SOD-1 mRNA, a DNA fragment was amplified by PCR using
oligonucleotides TS1 and TS2. TS1 (5`-GCGGCCAGGGAGCTCCAC-3`) contains
nucleotide sequence -114 to -97 of the SOD-1 gene whereas
TS2 (5`-AACGAGGCCCTGGCGCCA-3`) contains nucleotide sequence -15
to +3 of the SOD-1 gene.
In Situ HybridizationTissue preparation,
hybridization conditions, and radioautography were as previously
described (Morales and Hecht, 1994).
RNase Protection AssaysRNase protection
analysis was performed using a modification of Ausubel et
al.(1991). A 335-bp fragment (-225 to 110) containing the
promoter and the 5`-region of SOD-1 was PCR amplified from the 16-kb
mouse genomic SOD-1 fragment using oligonucleotides RP1 and RH1 and
subcloned. P-Labeled antisense RNA was transcribed from
the linearized 335-bp SOD-1 subclone and isolated by electrophoresis in
a 6% acrylamide gel. The radiolabeled RNA was recovered from the
acrylamide gel by swirling gel slices in elution buffer containing 300
mM sodium acetate, 0.5% SDS, and 2 mM EDTA for 4 h,
followed by precipitation with 2.5 volumes of 100% ethanol.
Radiolabeled RNA (2 10 cpm) was mixed with RNA
aliquots (10 µg) in 30 µl of hybridization buffer (40 mM Pipes, pH 6.4, 400 mM NaCl, 1 mM EDTA, and 80%
formamide), denatured by heating to 85 °C for 3 min, and annealed
overnight at 50 °C. Unhybridized RNAs were removed by incubation at
37 °C for 20 min with 350 µl of 10 mM Tris, pH 7.4,
500 mM NaCl, 5 mM EDTA, 50 µg/ml RNase A, and 2
µg/ml RNase T1. The RNases were subsequently removed by incubating
the samples with 50 µg of proteinase K and 20 µl of 10% SDS for
15 min at 37 °C. The protected RNA:probe hybrids were extracted
with phenol:chloroform (1:1) and precipitated with 2.5 volumes of 100%
ethanol after the addition of yeast carrier tRNA (10 µg). The
pellet was resuspended in 10 µl of RNA running buffer (80%
formamide, 10 mM EDTA), denatured at 95 °C for 2 min, and
analyzed in 6% acrylamide sequencing gels.
Southern Blot Analysis of the SOD-1
GeneHigh molecular weight genomic DNA was isolated from
the spleens of CD-1 mice and digested with restriction enzymes. The
digested DNA fragments were resolved in 0.7% agarose gels, transferred
to nylon membranes (DuPont NEN), and hybridized to P-labeled SOD-1 cDNAs.
Polysomal GradientsFractionation of
post-mitochondrial extracts over sucrose gradients was performed as
previously described (Kleene et al., 1984; Hake et
al., 1990). Post-mitochondrial supernatants were prepared from
adult testes, and 4 ml were loaded over a 35-ml 10%-35% sucrose
gradient over a 2-ml 60% sucrose cushion. After centrifugation at
28,000 rpm for 3 h, the gradient was fractionated into six tubes, and
RNA was purified for Northern blot analysis as described above.
Cell-free TranslationsTwo EcoRI-AvaI cDNA fragments, a 645-bp somatic type
SOD-1 sequence, and a 759-bp testis-specific SOD-1 sequence were PCR
generated from cDNAs and subcloned into pGEM 3Z (Promega). The two cDNA
fragments have identical 5`-UTR, coding, and 3`-UTR sequences, and the
testis-specific SOD-1 cDNA has an additional 114 nucleotides at its
5`-end. Capped SOD-1 transcripts were transcribed from the AvaI-linearized pGEM 3Z SOD-1 constructs using T7 RNA
polymerase. Trace amounts of [ H]CTP were
incorporated into the mRNAs for quantitation, and the integrity and
sizes of the transcripts were verified in 1% formaldehyde-agarose gels.
Equimolar amounts ranging from 1 to 8 pmol of the SOD-1 mRNAs were
translated in rabbit reticulocyte lysates in the presence of
[ S]methionine (Amersham Corp.), and aliquots of
the translated proteins were analyzed by electrophoresis in 12.5%
polyacrylamide gels, followed by fluorography.
RESULTS
Three Sizes of SOD-1 mRNAs Are Expressed
during Male Germ Cell DifferentiationThe amounts and sizes
of SOD-1 mRNAs in mouse liver, brain, spleen, heart, and kidney and in
prepuberal and sexually mature mouse testes were examined by Northern
blotting. A SOD-1 mRNA of approximately 0.73 kb was observed in all
somatic tissues and in the RNAs from prepuberal and adult testes (Fig. 1A, lanes1-11). In
addition, a developmentally increasing amount of two additional SOD-1
transcripts of about 0.80 and 0.93 kb was detected in the testes of
22-day-old, 25-day-old, and adult mice (Fig. 1A, lanes9-11).
Figure 1:
Northern blot of
SOD-1 mRNAs in mouse somatic tissues and prepuberal and adult mouse
testes. A, RNA aliquots (10 µg) from adult mouse liver (lane1), brain (lane2), spleen (lane3), heart (lane4), and
kidney (lane5) and testes from 6-day-old (lane6), 12-day-old (lane7), 17-day-old (lane8), 22-day-old (lane9),
25-day-old (lane10) and adult mice (lane11) were electrophoresed in 1% agarose gels and
transferred to nylon membranes. The membranes were hybridized with a P-labeled cDNA-encoding mouse SOD-1. The arrows indicate the positions of the three sizes of SOD-1 mRNAs. B, RNA aliquots (10 µg) from testes from 17-day-old mice (lane1), adult mice (lane2),
round spermatids (lane3), and elongating spermatids (lane4) were analyzed as in A.
Since the 0.80- and 0.93-kb
SOD-1 mRNAs first appear in the testes of prepuberal mice at the time
of differentiation when post-meiotic spermatids are seen, we analyzed
enriched populations of cells to better define the cellular locations
of the two large SOD-1 transcripts. RNAs isolated from enriched
populations of round and elongating spermatids were hybridized to the
SOD-1 cDNA. The developing spermatids predominantly contain SOD-1 mRNAs
of 0.80 and 0.93 kb and little, if any, of the 0.73-kb SOD-1 mRNA (Fig. 1B, lanes3 and 4).
Round spermatids contain predominantly the 0.93-kb mRNA and a smaller
amount of the 0.80-kb mRNA. In elongating spermatids, most of the SOD-1
mRNA migrates as a heterogenous band faster than the 0.93-kb SOD-1 mRNA
seen in round spermatids. Testes of 17-day-old and adult mice show
their expected one and three SOD-1 mRNAs, respectively (Fig. 1B, lanes1 and 2). We
conclude that in place of the ubiquitously expressed 0.73-kb somatic
SOD-1 transcript, post-meiotic male germ cells contain two additional
SOD-1 mRNAs with slower electrophoretic mobilities.
The Post-meiotic SOD-1 mRNAs Contain Additional
Nucleotides at the 5` TerminiSince superoxide dismutase 1
is a single copy gene and three different sizes of SOD-1 mRNAs are
detected in mouse testis, we have utilized RNase H digestion assays to
define structural differences among the mRNAs (Fig. 2). A single
band of deadenylated SOD-1 mRNAs of about 0.63 kb is detected in liver (Fig. 2A, lane2), whereas two
deadenylated mRNA bands of about 0.63 and 0.75 kb are seen in adult
testis (Fig. 2A, lane4). The faster
migrating testicular RNA comigrates with the 0.63-kb somatic SOD-1
mRNA. After deadenylation, the slower migrating testis-specific SOD-1
mRNA appears to be approximately 120 nucleotides longer than the
0.63-kb SOD-1 mRNA. These data suggest that in adult mouse testis, the
three SOD-1 mRNAs are derived from two transcripts, one of which is
about 120 nucleotides longer than the somatic SOD-1 mRNA.
Figure 2:
RNase H analysis of SOD-1 mRNAs. Aliquots
(15 µg) of adult total testis RNA were hybridized to oligo(dT) and
oligonucleotides RH1 or RH2. The hybrids were then digested with RNase
H, electrophoresed in 1% agarose gels, blotted onto nylon membranes,
and hybridized with a P-labeled SOD-1 cDNA probe. A, control and RNase H digested liver and testis SOD-1 RNAs. Lanes1 and 3, undigested RNA samples of
adult mouse liver and testis, respectively; lanes2 and 4, RNase H digested RNA samples of adult mouse liver
and testis RNA, respectively. B, control and RNase H digested
testis SOD-1 mRNAs after hybridization to complementary
oligonucleotides and oligo(dT). Lane1, Undigested
adult testis RNA; lane2, RNase H treated adult
testis RNA sample after hybridization to RH2; lane3,
RNase H treated adult testis RNA sample after hybridization to oligo
RH1 and oligo(dT).
To
determine where the additional nucleotides are located in the
post-meiotic SOD-1 transcripts, SOD-1 mRNAs were hybridized with
specific oligonucleotides, split into 5`- and 3`-regions by RNase H
digestion, and then analyzed by Northern blotting. When the 5`-UTR and
poly(A) tails were detached from the SOD-1 coding region, one major
mRNA of about 0.6 kb and a small fragment were detected with a probe
for the coding region of mouse SOD-1 (Fig. 2B, lane3). Separation of the 3`-UTR from the coding region of
SOD-1 mRNA yielded two major bands of RNA with a size difference of
about 120 nucleotides (Fig. 2B, lane2). This suggests that the additional sequence present in
the post-meiotic SOD-1 transcripts is at the 5` terminus.
The Mouse SOD-1 Gene Is a Single Copy Gene That
Utilizes Two Promoters in Mouse TestisTo more precisely
characterize the post-meiotic SOD-1 mRNAs, we isolated and sequenced
SOD-1 cDNAs from a mouse round spermatid cDNA library. Two populations
of SOD-1 cDNAs were obtained (Fig. 3). One group of cDNAs
contained a sequence identical to the coding and 3`-UTR sequences of
the somatic cell SOD-1 cDNAs previously described by Bewley(1988) and
Benedetto et al.(1991). The second group of SOD-1 cDNAs
contained the identical sequence present in the shorter SOD-1 cDNAs and
an additional 114 nucleotides at their 5`-ends (denoted by underlinedsequences between the arrows in Fig. 3). This suggests that the post-meiotic SOD-1 mRNAs and the
somatic SOD-1 mRNA are derived from the same single copy gene.
Figure 3:
Sequence analysis of mouse testicular
SOD-1 cDNAs and gene. The underlining between the arrows indicates the additional RNA segment located at the 5` terminus of
the testis-specific SOD-1 mRNA. The largesolidarrow and +1 indicate the primary somatic
transcription start site. The smallopen and solidarrows represent the primary transcription
start sites of the post-meiotic 0.93-kb SOD-1 mRNA. The ATG codon
representing the start of translation of SOD-1 is boxed.
Additional conserved sequences from a mouse genomic fragment of SOD-1
gene are included. The abbreviations of consensus elements are C, CAAT box; SP1, transcription factor element; CRE, cAMP-responsive element; AP-3, PEA3-RS,
and NF-E , transcription factor elements; mP1-C, mP1-G, mP1-E, and mP1-F, the
conserved sequences present in the promoters of mouse protamine 1,
protamine 2, and transition protein 1 (Johnson et al.,
1988).
To
better establish the structural relationship of the SOD-1 cDNAs, a
0.90-kb fragment containing 750 nucleotides of the 5`-flanking region
of the SOD-1 gene was isolated and sequenced. Computer analysis of 630
nucleotides 5` to the predicted transcription start site of the
post-meiotic SOD-1 mRNA reveals a group of sequence elements known to
be transcription factor binding sites as well as conserved sequences
present in other post-meiotically expressed genes (Fig. 3).
Among the most notable protein binding sites are a CAAT box present at
-210, two Sp1 binding sites located at -133 and -529,
and two cAMP-responsive element modulator (CREM) binding sites located
at -228 and -606. In addition, several conserved sequence
elements previously seen in the promoters of other testis-specific
genes by Johnson et al. (1988) are denoted with mP1-C, mP1-E,
mP1-F, and P1-G (Fig. 3). Sequence analysis of the SOD-1
cDNAs and genomic DNA suggests that the additional sequence present in
the longer SOD-1 cDNAs and in the 0.93-kb SOD-1 mRNAs is contiguous
with the somatic SOD-1 promoter. Two different approaches, Southern
blotting and RNase protection assays, were used to confirm this and
also to monitor for alternative splicing. Restriction digested mouse
genomic DNA was analyzed by Southern blotting with a coding region
probe of SOD-1 and with a probe specific to the 114 nucleotide 5`-UTR
sequence of the post-meiotic SOD-1 transcript (Fig. 4). When DNA
digested with the enzymes BamHI, EcoRI, HindIII, or SacI was hybridized with the SOD-1 coding
region cDNA, two or three bands of DNA with sizes ranging from about
5-11 kb were seen (Fig. 4A, lanes1-4). Rehybridization of the same blot with a SOD-1
probe specific for the 5` terminus of the post-meiotic SOD-1 transcript
detected in each digestion one DNA fragment previously seen with the
SOD-1 coding region cDNA probe (Fig. 4B, lanes1-4). This establishes that the 5`-UTR sequence of
the post-meiotic SOD-1 mRNA is present in the same genomic DNA fragment
that encodes the somatic SOD-1 mRNA.
Figure 4:
Southern blot analysis of the SOD-1 gene.
Aliquots (10 µg) of CD-1 mouse genomic DNA were digested with
restriction enzymes, fractionated through 0.7% agarose gel, and
transferred to a nylon membrane. A, the membrane was
hybridized to a P-labeled mouse SOD-1 coding region cDNA
probe. Lane1, digestion with BamHI; lane2, digestion with EcoRI; lane3, digestion with HindIII; lane4, digestion with SacI. B, after
removal of the SOD-1 cDNA probe, the blot was reprobed with the
5`-UTR-specific SOD-1 probe of the 0.93-kb
mRNA.
To determine if the
post-meiotic mRNAs are produced by alternative splicing, RNase
protection assays were performed. Based upon the cDNA and genomic
sequences of the mouse SOD-1 gene (Benedetto et al., 1991), P-labeled antisense RNA from -224 to +112 of
the SOD-1 gene was synthesized (Fig. 5). The antisense RNA was
hybridized to liver RNA (lane1), from testis RNA of
l7-day-old mice (lane2), and to testis RNA from
adult mice (lane3). Following RNase digestion, a
group of RNase-protected bands (lowerbracket) with
sizes of about 105-112 nucleotides was detected in the samples
from liver, prepuberal testes, and adult testes, suggesting that they
correspond to the 5`-start sites of the ubiquitous SOD-1 mRNA. An
additional more slowly migrating group of two distinct RNA bands with
sizes of about 226-232 nucleotides (upperbracket) was detected solely with adult mouse testis RNA (lane3), suggesting that these bands represent the
start sites of the post-meiotic SOD-1 mRNA. The size differences of
114-120 nucleotides between the slower and faster migrating bands
in Fig. 5are in agreement with the RNase H digestion (Fig. 2) and cDNA sequence data (Fig. 3). The multiple
RNase-protected bands in each group suggest that several transcription
start sites are used. Since there is size heterogeneity among the SOD-1
transcripts, we arbitrarily use 114 nucleotides, the size difference of
the two groups of testicular SOD-1 cDNAs we have isolated, when we
compare the size of the transcripts from the somatic and post-meiotic
promoters. These data establish that the transcription start sites of
the 0.93 and 0.73-kb SOD-1 mRNAs are contiguous.
Figure 5:
RNase
protection assay of testicular SOD-1 mRNAs. Aliquots (15 µg) of RNA
were annealed to 2 10 cpm of P-labeled
single-stranded antisense SOD-1 RNA and digested with RNases A and
T . The protected RNA fragments were analyzed in a 6%
acrylamide sequencing gel. Lane1, liver RNA; lane2, testis RNA from 17-day-old mice; lane3, adult testis RNA; lane4, antisense
RNA probe only. The protected RNA regions are indicated in brackets. The lanes labeled GATC are DNA sequencing
ladders used to calculate the sizes of the protected RNA
fragments.
Cellular Localization of SOD-1 mRNAs from the Two
Testis SOD-1 PromotersTo localize precisely the cellular
sites of expression of SOD-1 transcripts from the two SOD-1 promoters
utilized in the mouse testis, two H-labeled probes were
hybridized in situ and visualized radioautographically. The
first probe, an antisense RNA to the coding region of SOD-1, yielded a
radioautographic reaction in all cells of the seminiferous epithelium
including the Sertoli cells (Fig. 6, upperpanel; Fig. 7, lowerpanel). No
major differences in hybridization intensity were seen among the
different stages of the cycle. A moderate reaction was also observed
over the cells present in the interstitial space. The second probe,
specific to the 5`-untranslated region of the post-meiotic SOD-1 mRNA,
was predominantly detected in spermatids from step 6 to step 16 (Fig. 6, middlepanel; Fig. 7, twoupperpanels). In early steps 1-5, the
cytoplasm of these round spermatids remained unreactive (Fig. 7, upperrightpanel), suggesting that
transcription of postmeiotic SOD-1 mRNA initiates at a detectable level
at the beginning of step 6 spermatids. Control RNA sense probes did not
yield any radioautographic reaction, indicating that the reactions
generated by the antisense probes were specific (Fig. 6, lowerpanel).
Figure 6:
In situ hybridization of mouse
seminiferous tubules. Upperpanel, cross section of
mouse seminiferous epithelium hybridized in situ with a H-labeled RNA probe to the SOD-1 coding region and
visualized by radioautography. Silver grains uniformly overlay all
cells of the seminiferous tubules (stageIX)
( 400). Middlepanel, cross section of mouse
seminiferous epithelium hybridized in situ with a H-labeled RNA probe specific to the 5`-UTR of the
post-meiotic SOD-1 mRNA. The probe generated silver grains on
spermatids (step9) of the seminiferous tubule (stageIX) ( 400). Lowerpanel, cross section of mouse seminiferous epithelium
hybridized in situ with a H-labeled sense RNA
probe to the SOD-1 coding region. This probe did not yield any
radioautographic reaction ( 400).
Figure 7:
In situ hybridization of mouse
seminiferous tubules. Upperpanels, cross section of
mouse seminiferous epithelium at stage XI hybridized in situ with a H-labeled RNA probe specific to the 5`-UTR of
the post-meiotic SOD-1 mRNA. The probe generated silver grains over the
cytoplasm of steps 11 and 13 elongated spermatids but not over the
cytoplasm of step 1 spermatids. Upperrightpanel, cross section of a seminiferous tubule at stage I
hybridized as described for leftupperpanel ( 400). Lowerpanel, cross section of
mouse seminiferous epithelium hybridized in situ with a H-labeled RNA probe to the coding region of SOD-1. Silver
grains uniformly overlay all cells of the seminiferous tubule (stageIV) ( 400).
SOD-1 mRNAs Are Differentially Adenylated in
Post-meiotic Germ CellsIn sexually mature testes, a third
SOD-1 mRNA of about 0.80 kb is seen (Fig. 1B, lane2). To determine whether the 0.80-kb SOD-1 transcript is
derived from the 0.93- or the 0.73-kb SOD-1 mRNAs, we combined RNase H
digestions with hybridization to probes that can differentiate between
the two SOD-1 mRNAs (Fig. 8). When blots containing RNAs from
prepuberal and adult testes and enriched populations of round
spermatids and elongating spermatids were hybridized to the
post-meiotic 5` terminus probe (Fig. 8A), the 0.93-kb
mRNA was detected in adult mouse testes (lane3) and
round spermatids (lane5) but not in the testes of
17-day-old mice (lane1). In elongating spermatids,
the 5` terminus probe hybridized to a heterogenous population of SOD-1
mRNAs, migrating faster than the 0.93-kb SOD-1 mRNA (Fig. 8A, lane7). The 5` terminus
probe did not hybridize to the 0.73-kb SOD-1 mRNA in any RNA sample we
have examined. Following deadenylation of the SOD-1 mRNAs, the
post-meiotic 5` terminus cDNA probe detected one SOD-1 mRNA of about
0.75 kb in adult testes, round spermatids, and elongating spermatids (Fig. 8A, lanes4, 6, and 8). This suggests that the heterogenous population of SOD-1
mRNA detected by the 5` terminus probe in elongating spermatids are
deadenylated forms of the 0.93-kb transcript.
Figure 8:
Identification of post-meiotic SOD-1
mRNAs. Aliquots (10 µg) of RNA from testes of 17-day-old mice,
adult testes, round spermatids, and elongating spermatids were annealed
to oligo(dT) and then digested with RNase H. The RNAs were separated in
a 1% agarose gel, transferred to nylon membranes, and hybridized with a P-labeled SOD-1 probe specific for the 5`-UTR of the
0.93-kb SOD-1 mRNA (A); or, after removal of the original
probe, the blot was rehybridized with a P-labeled SOD-1
coding region cDNA (B). Lanes1, 3, 5 and 7, undigested RNAs of testes of 17-day-old
mice, adult testes, round spermatids, and elongating spermatids,
respectively. Lanes2, 4, 6, and 8, RNase H digested RNA samples of testes of 17-day-old mice,
adult testes, round spermatids, and elongating spermatids,
respectively.
To determine whether
lengthened transcripts of the 0.73-kb SOD-1 mRNA also contribute to the
intermediate size SOD-1 mRNAs, the same filter was rehybridized with
the SOD-1 cDNA probe (Fig. 8B). Three size classes of
SOD-1 mRNAs were detected in adult testis (Fig. 8B, lane3), and two transcripts of sizes about 0.80 and
0.93 kb were seen in round spermatids (Fig. 8B, lane5), whereas only the 0.73-kb transcript was seen
in testis RNA from 17-day-old mice (Fig. 8B, lane1). Following deadenylation, two RNA bands were detected
in the adult testis, round spermatid and elongating spermatid RNAs (Fig. 8B, lanes4, 6, and 8), demonstrating that in spermatids SOD-1 mRNAs of about 0.80
kb are derived from the 0.73-kb somatic SOD-1 transcript.
The 0.93-kb SOD-1 mRNA Is Primarily Non-polysomal,
whereas the 0.80- and 0.73-kb SOD-1 mRNAs Are Polysome
AssociatedTo determine the relative translational
utilization of each of the three SOD-1 mRNAs in mouse testis,
post-mitochondrial extracts from total testes were fractionated by
sucrose gradient sedimentation, and purified RNAs were hybridized to
SOD-1 cDNA probes (Fig. 9). Most of the 0.80- and 0.73-kb SOD-1
transcripts were present in the polysomal fractions (Fig. 9A, lanes5 and 6),
whereas the majority of the 0.93-kb SOD-1 transcript was detected in
the non-polysomal fractions (Fig. 9A, lanes2 and 3).
Figure 9:
Distribution of SOD-1 mRNAs in a
fractionated post-mitochondrial testicular extract. Fraction1 represents the top of the gradient. LaneT, unfractionated adult testis RNA control. Equal volumes
of RNA from each fraction were electrophoresed in 1% agarose gels and
blotted on nylon membranes. For each autoradiogram, the mRNA sizes are
noted at the right. A, autoradiogram obtained after
hybridization with the SOD-1 coding region cDNA. B, after the
SOD-1 probe was removed, the blot was rehybridized with the probe
specific to the 5`-UTR of the 0.93-kb SOD-1 mRNA. C, to
confirm proper resolution of polysomal and non-polysomal mRNAs in the
sucrose gradient, the same blot was rehybridized, after the SOD-1
probes were removed, with a cDNA probe encoding mouse protamine 2. The
presence of the 830-nucleotide mP2 mRNA in the non-polysomal fractions
and the 700-nucleotide mP2 in the polysome fractions confirms the
polysomal or non-polysomal positions of the SOD-1 mRNAs in the gradient
(Kleene, et al., 1984).
To better quantitate the
distribution of transcripts derived from the 0.93-kb SOD-1 mRNA, the
blots were rehybridized with the 5` terminus probe after the SOD-1 cDNA
probe was removed (Fig. 9B). Although most of the
0.93-kb SOD-1 mRNA is found in the non-polysomal fractions, the 5`
terminus probe detects a population of heterogeneous and shortened
SOD-1 mRNAs on polysomes, suggesting that some of the 0.93-kb SOD-1
mRNA is translated in a partially deadenylated form. Based upon our
findings of a distinct band of 0.93-kb SOD-1 mRNA in round spermatids
but a heterogeneous and shortened population of SOD-1 mRNAs derived
from the 0.93-kb transcript in elongating spermatids (Fig. 8),
we conclude that shortening of the 0.93-kb SOD-1 mRNA occurs
concomitant with translation in elongating spermatids. Northern blot
analysis of deadenylated aliquots of non-polysomal SOD-1 mRNA (a
deadenylated aliquot of lane3 from Fig. 9)
and polysomal SOD-1 mRNA (a deadenylated aliquot of lane6 from Fig. 9) reveals two SOD-1 transcripts with similar
electrophoretic mobilities in the non-polysomal and polysomal fractions
(data not shown). Quantitation of the polysomal and non-polysomal
amounts of the two SOD-1 mRNAs confirms the distribution differences
seen in Fig. 9with the majority of the 0.73-kb transcript on
polysomes and the majority of the 0.93-kb transcript in the
non-polysomal fraction. Since the two SOD-1 transcripts only differ in
their 5`-UTRs, this suggests that the lengthened 5`-UTR may reduce the
efficiency of polysome loading of SOD-1 mRNAs in post-meiotic cells.
The 0.73-kb SOD-1 mRNA Is More Efficiently Translated
than the 0.93-kb SOD-1 mRNA in a Cell-free Translation
SystemTo evaluate the influence of the additional 5`-UTR
sequence of the testis-specific SOD-1 mRNA on its translation, we
synthesized in vitro somatic type and testis-specific SOD-1
transcripts and compared their translational efficiencies in a rabbit
reticulocyte lysate. To ensure that identical molar amounts of mRNAs
were used, the template RNAs were synthesized in the presence of low
levels of [ H]CTP, and after normalization to
compensate for the different mRNA sizes, 4 pmol of each template were
used. The somatic type 0.73-kb SOD-1 mRNA translates about 2-fold more
efficiently than the testis-specific 0.93-kb SOD-1 transcript (Fig. 10). Identical results were obtained in titration
experiments with RNA amounts ranging from 1 to 8 pmol. These data
support the reduced polysome loading of the 0.93-kb SOD-1 mRNA we find in vivo and suggests that the additional 114 nucleotides in
the 5`-UTR reduces the translational efficiency of SOD-1 mRNA.
Figure 10:
Translation of the 0.73- and 0.93-kb
SOD-1 mRNAs in a reticulocyte lysate. Equal amounts (4 pmol) of
transcripts from the 0.93-kb SOD-1 mRNA (lane1) or
the 0.73-kb SOD-1 mRNA (lane2) were translated.
SOD-1 protein synthesis was monitored by
[ S]methionine incorporation. Lane3 represents a cell-free translation incubation without SOD-1 mRNA.
The SOD-1 protein migrates at the expected size of 16 kDa (Levanon et al., 1985). Similar results were obtained in six different
experiments using six different preparations of template
mRNA.
DISCUSSION
We have identified in mouse testis three SOD-1 mRNAs that
code for the same protein. One SOD-1 mRNA of 0.73 kb is expressed in
all mouse somatic tissues as well as prepuberal and sexually mature
testes. We only detected the other two SOD-1 mRNAs, transcripts of 0.80
and 0.93 kb in the testis, where their expression appears to be
stage-specific during male germ cell differentiation. The 0.93- and
0.80-kb mRNAs are only found in the testes of mice where round
spermatids have differentiated. The 0.93-kb mRNA, which is mostly in
the non-polysomal fractions, is polysome bound in elongating spermatids
in a partially deadenylated form. Based upon SOD-1 cDNA and genomic
sequence data, RNase protection assays, and Southern blots, we conclude
that in the mouse the 0.93-kb SOD-1 mRNA contains 114-120
additional nucleotides in its 5`-untranslated region compared with the
ubiquitous SOD-1 mRNA and is transcribed from alternative transcription
start sites that are contiguous with the somatic SOD-1 promoter. Since the 0.93-kb SOD-1 mRNA is first transcribed in haploid germ
cells (Fig. 1, Fig. 6, and Fig. 7) and SOD-1 is a
single copy gene in the mouse, we can compare sequences conserved in
the promoters of post-meiotically expressed testis-specific genes with
the promoter used for SOD-1 in spermatids. Genes such as protamines 1
and 2 (Kleene et al., 1983; Hecht, 1993), transition proteins
1 and 2, and a selenium containing sperm mitochondrial protein have
been shown to be solely transcribed in haploid germ cells (Heidaran and
Kistler, 1987; Kleene and Flynn, 1987; Kleene, 1989). Sequence analyses
of the 5`-flanking region of the testis-specific SOD-1 gene reveal it
lacks a TATA box, which may explain why we detect heterogeneity in
SOD-1 transcript size from this promoter (Fig. 5). Defining the
5` terminus of the longer SOD-1 cDNAs as +1, we detect a CAAT box
96 nucleotides upstream of the alternative transcription initiation
site and 210 nucleotides upstream of the somatic promoter transcription
start site (Fig. 3). Binding sites for transcription factors Sp1
and CREM and several other conserved sequence elements present in the
promoters of mP1, mP2, and mTP1 are found in the 5`-flanking region of
the post-meiotic SOD-1 transcription start site. Several studies have
demonstrated that a variant of CREM plays a major role in controlling
post-meiotic gene transcription in round spermatids (Foulkes et
al., 1992; Delmas et al., 1993), and high levels of Sp1
have been detected in spermatids (Saffer et al., 1991). Thus,
although the sequence elements for Sp1 and CREM and other highly
conserved regions in testis-specific genes could regulate temporal
expression of the post-meiotic SOD-1 mRNA in developing spermatids,
which sequence elements are essential remains to be established. The
reason why transcription initiates from a novel upstream promoter site
for SOD-1 during spermiogenesis needs to be addressed. The post-meiotic
SOD-1 mRNA is initially transcribed in round spermatids, a cell type
that contains little, if any, of the 0.73-kb SOD-1 transcripts ( Fig. 6and Fig. 8). The down-regulation of SOD-1 mRNAs
that are derived from the somatic SOD-1 promoter toward the end of
spermatogenesis may result from 1) changes in availability of specific
transcription factors required by the somatic SOD-1 promoter, 2)
reduced accessibility to essential cis-acting promoter elements in the
ubiquitously expressed SOD-1 gene due to chromatin structure changes,
or 3) the expression of the novel SOD-1 mRNA with an extended 5`-UTR
possibly being required for the storage and utilization of SOD-1 mRNA
during spermiogenesis. When transcript sizes of genes expressed in
somatic cells and in testis are compared, testis-specific transcripts
are often detected. The genes for c-abl, angiotensin-converting enzyme,
cytochrome c , and 1,4 galactosyltransferase
all utilize testis-specific promoters to produce mRNAs that differ in
size from their somatic counterparts (Hake et al., 1990;
Shaper et al., 1990; Langford et al., 1991; Wolgemuth
and Watrin, 1991; Hecht, 1993). The testicular variant of proenkephalin
in rat and mouse is about 300 nucleotides longer than the somatic
proenkephalin mRNA because of alternative splicing at its 5` terminus
(Kilpatrick et al., 1990). The use of different
polyadenylation sites produces cytochrome c transcripts of 0.5-1.3 kb, whereas the use of different
promoter start sites results in cytochrome c mRNAs
that differ by about 60 nucleotides (Hake et al., 1990; Yiu, et al., 1995). Truncated forms of mRNAs encoding the
proto-oncogene fer (Fischman et al., 1990) and
transferrin (Griswold et al., 1988) have also been reported.
As seen with other testis-specific mRNAs that contain extended 5`-UTRs
and are translationally less active than their somatic transcripts
(Hake and Hecht, 1993; Rao and Howells, 1993), the additional sequences
in the 5`-UTR of the 0.93-kb SOD-1 mRNA may also modulate translation in vivo. This question also arises: why do male germ cells
need multiple SOD-1 mRNAs? SOD-1 plays a vital role in local defense
against tissue damage by free radicals in the male genital tract and
during the differentiation of germ cells in the testis (Nonogaki et
al., 1992). Although SOD-1 activity levels in somatic tissues and
cultured cells are often controlled at the transcriptional level
(Delabar et al., 1987), in mouse testis, both transcriptional
and translational regulation appear to be important. Many mRNAs
expressed during spermiogenesis are under translational control (Hecht,
1990, 1993) and specific RNA-protein interactions have been shown to
suppress translation of mRNAs encoding protamine 2 for up to 7 days
(Kwon and Hecht, 1993). The synthesis of the post-meiotic less
efficiently translated 0.93-kb SOD-1 mRNA suggests that in round
spermatids, either the mRNA is stored for later utilization or a
specific mechanism designed to prevent overexpression of SOD-1 protein
is operating. In transgenic mice, overexpression of SOD-1 protein has
been shown to cause a pathological state similar to that seen in
Down's Syndrome (Sinet, 1982; Avraham et al., 1988;
Cehallos-Picot et al., 1992). We do not know whether round and
elongating spermatids are exquisitely sensitive to overproduction of
SOD-1. Although the vast majority of the 0.73- and 0.80-kb SOD-1
mRNAs are on polysomes, the opposite is true for the 0.93-kb SOD-1
mRNAs. Moreover, polysome bound transcripts derived from the 0.93-kb
SOD-1 mRNAs are heterogenous and migrate more rapidly in a gel as a
result of poly(A) tail shortening. We observed that translation of the
post-meiotic SOD-1 mRNA is delayed, i.e. the mRNA is stored in
round spermatids, and partial deadenylation occurs concomitant with its
translation in elongating spermatids. This deadenylation process
appears identical to that occurring with many other transcripts
expressed in post-meiotic germ cells (Kleene, 1989). In addition to the
deadenylation of the 0.93-kb SOD-1 mRNA, adenylation of the 0.73-kb
SOD-1 mRNA also occurs. To our knowledge, this is the first report of
both deadenylation and adenylation of transcripts from the same gene in
the same organ. The 5`-UTRs of mRNAs perform important roles in
regulating their translation. Translation is inhibited by 96% by
placing a stem-loop structure in the 5`-UTRs of yeast mRNAs (Laso et al., 1993). Certain testicular mRNAs such as the 1.7-kb
cytochrome c and proenkephalin mRNAs contain
additional sequences in their 5`-UTRs and are not translationally
active (Garrett et al., 1989; Hake and Hecht, 1993). The
translational inefficiency of proenkephalin transcripts is directly
related to an additional open reading frame in the 5`-UTR (Rao and
Howells, 1993). Since the 0.73-kb SOD-1 mRNA is preferentially
translated over the 0.93-kb SOD-1 mRNA in vitro, the 0.93-kb
SOD-1 mRNA may serve as a backup system to synthesize SOD-1 when late
stages of spermatids are in free radical stress. When the predominantly
polysomal distribution of the 0.73-kb SOD-1 mRNA is compared with the
non-polysomal location of the 0.93-kb SOD-1 mRNA (Fig. 9), the
modest in vitro translation differences between the two mRNAs
suggests additional factors such as RNA binding proteins may be
involved in vivo. The relatively short 5`-UTRs of the multiple
SOD-1 mRNAs provide an ideal system to analyze how the 5`-UTR sequences
modulate translation. We propose that the 0.93-kb SOD-1 mRNA offers a
unique means to post-transcriptionally regulate a crucial protein
needed to balance oxidative load and antioxidant reserves in late
stages of male germ cell differentiation.
FOOTNOTES
- *
- This
work was supported by National Institutes of Health Grant HD 28832. The
costs of publication of this article were defrayed in part by the
payment of page charges. This article must therefore by hereby marked
``advertisement'' in accordance with 18 U.S.C.
Section 1734 solely to indicate this fact.
- §
- To whom correspondence should be addressed.
Tel.: 617-627-3192; Fax: 617-627-3805.
- (
) - The
abbreviations used are: SOD, superoxide dismutase; SOD-1, copper-zinc
superoxide dismutase; kb, kilobase(s); Pipes,
1,4-piperazinediethanesulfonic acid; CREM, cAMP-responsive element
modulator; UTR, untranslated region; bp, base pair(s); PCR, polymerase
chain reaction.
ACKNOWLEDGEMENTS
We thank Julie Codemo and Agnes Henebury for excellent
secretarial assistance.
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