|
Volume 270,
Number 1,
Issue of January 6, 1995 pp. 369-375
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Ligand
Binding by the Immunoglobulin Superfamily Recognition Molecule CD2 Is
Glycosylation-independent (*)
(Received for publication, August 1, 1994; and in revised form, October 3, 1994)
Simon J.
Davis
(1), (§),
Elizabeth A.
Davies
(1),
A.
Neil
Barclay
(1),
Susan
Daenke
(2),
Dale L.
Bodian
(3),
E.
Yvonne
Jones
(3), (4),
David
I.
Stuart
(3), (4),
Terry D.
Butters
(5),
Raymond A.
Dwek
(5),
P.
Anton
van der Merwe
(1)(¶)From the
(1)MRC Cellular Immunology Unit, Sir William
Dunn School of Pathology, South Parks Road, University of Oxford,
Oxford, OX1 3RE United Kingdom,
(2)Molecular Sciences Division, Nuffield Department
of Clinical Medicine, John Radcliffe Hospital, Oxford, OX3 9DU United
Kingdom,
(3)Laboratory of Molecular Biophysics and
(4)Oxford Centre for Molecular Sciences, The Rex
Richards Building, South Parks Road, University of Oxford, Oxford, OX1
3QU United Kingdom, and
(5)Glycobiology Institute, Department of
Biochemistry, South Parks Road, University of Oxford, Oxford, OX1 3QU
United Kingdom
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
The evolutionary success of the immunoglobulin superfamily
(IgSF) is thought to reflect the ability of IgSF protein domains to
form stable structural units. The role of glycosylation in stabilizing
these domains is controversial, however. In this study a systematic
analysis of the effect of glycosylation on the ligand-binding
properties of the cell-cell recognition molecule CD2, which consists of
two IgSF domains, was undertaken. A form of human soluble CD2 (hsCD2)
with single N-acetylglucosamine residues at each glycosylation
site was produced by inhibiting glucosidase I with N-butyldeoxynojirimycin during expression in Chinese hamster
ovary cells and digesting the expressed hsCD2 with endoglycosidase H.
The ligand and antibody binding properties of this form of hsCD2 were
indistinguishable from those of fully glycosylated hsCD2 as determined
by surface plasmon resonance analyses. The protein also formed
diffraction quality crystals and analysis of the 2.5-Å resolution
crystal structure indicated that the single N-acetylglucosamine residue present on domain 1 is unlikely to
stabilize the ligand binding face of hsCD2. A second, fully
deglycosylated form of hsCD2 also bound the ligand and antibodies
although this form of the protein tended to aggregate. In contrast to
the results of previous studies, the current data indicate that the
structural integrity and ligand binding function of human CD2 are
glycosylation-independent.
INTRODUCTION
The initial sequencing of immunoglobulins and
 -microglobulin implied that these molecules were
formed by individual protein structural units that evolved from a
single primordial domain of about 100 amino acids (reviewed in (1) ). The immunoglobulin superfamily (IgSF) ( )concept arose from the discovery that sequences
characteristic of these domains are also present in molecules without
an immunological function(1) . Structural studies of
immunoglobulins(2) , major histocompatibility complex class
I(3) , and class II antigens(4) ,
CD4(5, 6) , CD8(7) , and CD2 (8, 9, 10) have revealed that the IgSF fold
consists of a sandwich of two anti-parallel -sheets stabilized in
some instances by a conserved disulfide bond. The conserved patterns of
sequence characteristic of IgSF domains are generally limited to
-strand residues forming the hydrophobic core of the domain (1) which appears to be responsible for the strict conservation
of the three-dimensional structure of these domains(10) . A
recent survey of the leucocyte surface has indictated that 36% of
leucocyte antigens belong to the IgSF suggesting that the IgSF forms
the largest single family of molecules present on the cell surface (11) . The ligand interactions of the cell-cell recognition
molecule CD2 are among the best characterized of those involving IgSF
cell surface molecules. In humans and rodents the ligands for CD2 are
CD58(12, 13) and CD48(14, 15) ,
respectively. Along with CD2, CD48 and CD58 form a subset of molecules
within the IgSF that also includes the carcinoembryonic
antigens(16) , Ly-9 (17) and 2B4(18) . The
clustering of the CD2, CD48, and CD58 genes in the genomes of humans
and mice implies that CD2, CD48, and CD58 have all evolved from a
common precursor involved in homophilic interactions(19) . The
crystal structures of rat sCD2 (9) and human sCD2 (hsCD2) (8) have revealed that the extracellular region of CD2 consists
of two IgSF domains: an NH -terminal V-set domain and a
C2-set domain. Mutational analyses of CD2 (20, 21, 22, 23) established that
the ligand binding site is located on the GFCC`C" face of the
-sheet of the V-set domain. The highly conserved linker region
seen in the sCD2 structures places this relatively flat, highly charged
face at the membrane-distal surface of the
molecule(8, 9) . The interactions of rat and human CD2
with their respective ligands, CD48 (24) and CD58(25) ,
are characterized by relatively fast on-rates and very fast off-rates
which, together with the structural data, suggest that the binding of
CD2 with its ligands is not dependent on large conformational changes. The role of glycosylation in stabilizing IgSF domains is
controversial. While many IgSF molecules are N-glycosylated,
the extent of glycosylation varies considerably and glycosylation sites
are generally not conserved, even between species homologues. The
ligand binding function of rat CD2, which has four N-glycosylation sites, is not
glycosylation-dependent(15, 24) . In contrast, it has
been suggested that ligand binding by human CD2, which has three N-glycosylation sites, is
glycosylation-dependent(26) . This observation has significant
implications given that the evolutionary success of the IgSF, and the
high level of conservation of the IgSF fold, are both thought to
reflect the ability of IgSF protein domains to form stable structural
units for the presentation of receptor-ligand recognition
motifs(1, 27) . In the present study a systematic
analysis of the effect of glycosylation on the ligand binding
properties of CD2 has been undertaken. The data indicate that the
structural integrity and ligand binding function of human CD2 are not
glycosylation dependent.
MATERIALS AND METHODS
Protein ExpressionThe preparation and
expression of the constructs encoding hsCD2 and sCD58 in Chinese
hamster ovary (CHO) cells are described in detail
elsewhere(25) . In initial optimization experiments with N-butyldeoxynojirimycin (NB-DNJ), 2 500 cm flasks (Nunc) were seeded with hsCD2 secreting CHO cells in 100
ml of GMEM-S (Applied Protein Products), 10% fetal calf serum
containing NB-DNJ at 0, 0.5, 1, 1.5, or 2 mM. After 6 days 100
ml of GMEM-S, 10% fetal calf serum containing 4 mM sodium
butyrate, and NB-DNJ at 0, 0.5, 1, 1.5, or 2 mM was added. Ten
days after the addition of the butyrate, 0.5-ml samples of the
supernatant were taken for comparison of secretion levels. The cultures
were left for a total of 15 days before the supernatants were
harvested. When large amounts of endoglycosidase H (endo H)-treated
hsCD2 were required for crystallization, the cells were grown to
confluence in cell factories as described above, and NB-DNJ was added
with the sodium butyrate to a final concentration of 1.5 mM.
These cultures were then left for a further 3-4 weeks prior to
harvesting.After preclearing the spent tissue culture medium at
10,000 g for 30 min, the hsCD2 was purified by
affinity chromatography according to published methods (28) using an antibody affinity column prepared with the
anti-CD2 monoclonal antibody, (mAb) X/3. Final purification involved
gel filtration on Sephacryl S-200 in 10 mM Hepes, 140 mM NaCl, pH 7.4.
Deglycosylation and CrystallizationAfter
preparation of the hsCD2 in the presence of various concentrations of
NB-DNJ, endo H sensitivity was determined by incubating 10-µg
aliquots of the purified glycoproteins with 0.012, 0.06, or 0.3
International Union of Biochemistry (I.U.B.) units/mg of endo H
(Boehringer Mannheim) in 30 µl of 100 mM sodium acetate,
pH 5.2. After incubation overnight at 37 °C the digested samples
were boiled in 1% SDS under reducing conditions prior to
electrophoresis in 15% SDS-PAGE gels.For large-scale endo H
treatment of hsCD2 for crystallization experiments, 4 mg of the
purified glycoprotein were concentrated to 1-2 mg/ml in 0.1 M sodium acetate, pH 5.2, and then digested with 0.1 I.U.B. units/ml
endo H overnight at 37 °C. To purify the endo H-treated hsCD2 from
the contaminating endo H-resistant fraction, the protein mixture was
concentrated to 0.5 ml and then passed through a 5-ml Sephadex G-50
column to remove free oligosaccharides. The eluate was then passed
through a 15-ml lectin affinity column consisting of equal parts of
lentil lectin, concanavalin A and wheat germ agglutinin, each coupled
to Sepharose 4B (Sigma). The homogeneity of the hsCD2 was then
confirmed by SDS-PAGE on a 15% acrylamide gel. The lectin purified
protein was concentrated to 2 ml and then applied to Sephadex G-75 in
10 mM Hepes, 140 mM NaCl, pH 7.4, to remove free
lectin eluting from the lectin-affinity column. The deglycosylated
hsCD2, in 10 mM Hepes, 140 mM NaCl, pH 7.4, was
concentrated to 17 mg/ml. Crystals were grown by vapor diffusion in
sitting drops at room temperature. Initial trials were conducted using
Crystal Screen reagents (Hampton Research). For large scale
preparation of fully deglycosylated protein, hsCD2 (at 600 µg/ml)
purified from untreated cultures was digested with
peptide:N-glycosidase F (PNGase F; New England BioLabs) at
0.085 I.U.B. units/ml in 0.5 M Tris, pH 8. Deglycosylated
protein was then purified by gel filtration on a Superdex G-75 fast
protein liquid chromatography system (Pharmacia Biotech Inc.).
Carbohydrate Analyses and Mass SpectrometryAmino
sugars were quantitated by Dionex high performance anion exchange
chromatography after hydrolysis in 6 N HCl at 100 °C for 4
h. 2-Deoxy glucose was added as an internal standard after hydrolysis,
and the reaction products were separated using an isocratic eluant
containing 4 mM NaOH. Mass spectrometric analysis of the
proteins in H O was performed on a Fisons VG BioQ mass
spectrometer equipped with an electrospray interface operating in
positive ion mode.
Binding ExperimentsAntibodies were obtained as
previously described(25) . Analysis of the interaction of hsCD2
with sCD58 and anti-CD2 mAbs was performed on a BIAcore biosensor (Pharmacia). Experiments were performed at 25 °C at
the indicated buffer flow rates (3-20 µl/min). The buffer
used was Hepes-buffered saline which contained (in mM): NaCl,
150; MgCl , 1; CaCl , 1; NaN , 10;
0.005% Surfactant P-20 (Pharmacia), and Hepes, 10 (pH 7.4). NaN was omitted during the immobilization procedures. The various
forms of hsCD2 were covalently coupled to a CM5 sensor chip via primary
amine groups (Pharmacia) as described using the Amine Coupling Kit
(Pharmacia)(25) . For immobilization of hsCD2, the
glycosylation variants were used at 22-85 µg/ml in 10 mM sodium acetate (pH 5), and the activation times were varied from
75 to 360 s. Immobilized untreated and endo H-treated hsCD2 were
regenerated after immobilization or antibody binding with 10-100
mM HCl. However, HCl treatment of immobilized PNGase F-treated
hsCD2 reduced its ability to bind ligand and antibody, and so it was
omitted when analyzing PNGase F-treated hsCD2 (see Fig. 6D). sCD58 loses its ligand and antibody binding
activity when coupled via primary amines. Therefore sCD58 was coupled,
as described previously(25) , via thiol groups on two cysteine
residues present within the second IgSF domain which can be exposed by
mild reduction.
Figure 6:
Crystallization of hsCD2 and diffraction
analysis of crystals. Crystals of purified endo H-treated hsCD2 were
grown by vapour diffusion against 1.25 M sodium citrate, 0.1 M Hepes, pH 7.4. Typical crystals are shown in Panel
A; the largest crystals from 2-4-µl drops grew to 0.6 mm
along the longest axis. In Panel B a typical two-pass 1.5°
oscillation image taken at Daresbury Synchrotron Radiation Source (line
9.5, = 0.999 Å, T = 20 °C) is
shown. The crystal to film distance was 212.2 mm. The edge of the image
corresponds to diffraction to Bragg spacings of 2.5 Å. The
diffraction pattern was displayed with the program PSIMAGE (R. Esnouf,
Oxford).
The equilibrium binding data (see Fig. 3)
were analyzed by 1) nonlinear curve fitting of the Langmuir binding
isotherm to the primary data and 2) linear curve fitting of the
Scatchard plots. The dissociation phases (see Fig. 4) were
analyzed by first normalizing them so that the response before
dissociation was 100% and the base line response was 0%. Dissociation
rate constants (k ) for each dissociation phase
were then determined by fitting mono- or bi-exponential decay functions
to the data (see Fig. 4). All curve fitting was performed using
the curve-fitting functions of the program Origin version 2 (MicroCal
Software Inc, Northampton, MA) which was run on a Compaq PC. Linear
curve fitting was by linear least squares regression. Nonlinear curve
fitting employed iterative least squares curve fitting using the
Marquardt-Levenberg algorithm.
Figure 3:
Measurement
of the affinity of sCD58 binding to untreated, endo H-treated and
PNGase F-treated hsCD2. Panel A, sCD58 was injected for 6 s at
the indicated concentrations over a flow cell with immobilized
untreated (open circles) or endo H-treated (closed
circles) hsCD2. The levels of untreated and endo H-treated hsCD2
immobilized were 3160 and 4983 response units (RU), respectively. At
saturation, 39 and 34% of the immobilized untreated and endo H-treated
hsCD2 had bound sCD58, respectively. Panel B, untreated or
PNGase F-treated hsCD2 were injected for 6 s at the indicated
concentration over a flow cell with sCD58 immobilized. The level of
immobilization of sCD58 was 10,863 RU. The equilibrium binding levels
shown in Panels A and B were calculated as described
elsewhere (24) by subtracting the response obtained when the
same sCD58 and hsCD2 samples are injected over a control flowcell with
nothing immobilized. The flow rate was 20
µl min . Insets, Scatchard plots of
the binding data. The K values
were determined by linear-regression analysis of the Scatchard plots as
well as by nonlinear curve fitting of the saturation binding curve.
Both methods gave the same K
values.
Figure 4:
Comparison of the rates of dissociation of
sCD58 from untreated hsCD2, endo H-treated hsCD2, and PNGase F-treated
hsCD2. Panel A, the dissociation of sCD58 (0.22 mg/ml) from
immobilized untreated (open triangles, 3160 RU) or endo
H-treated (filled triangles, 4983 RU) hsCD2. The fall in
response following injection of sCD58 over a flow cell with nothing
immobilized is also shown (dotted line). The equilibrium
responses (100%) following injection of sCD58 over nothing, untreated
hsCD2 and endo H-treated hsCD2 were 92, 373, and 705 RU, respectively. Panel B, dissociation of untreated hsCD2 (open
triangles, 0.9 mg/ml) or PNGase F-treated hsCD2 (closed
triangles, 1 mg/ml) from immobilized sCD58 (10,863 RU
immobilized). The fall in response following injection of untreated (open triangles) and PNGase F-treated (closed
triangles) hsCD2 over a flow cell with nothing (dotted
line) immobilized is shown. The equilibrium responses (100%)
following injection of untreated and PNGase F-treated hsCD2 over
immobilized sCD58 were 850 and 1193 RU, respectively. The same samples
injected though a control flow cell gave responses of 161 and 317 RU.
The samples were injected at flow rates of 20 µl/min. The apparent
dissociation times were obtained by fitting mono-exponential decay
curves to the data (see dotted and solid lines). One
exception was the dissociation of PNGase F-treated hsCD2 from
immmobilized sCD58 which was fitted using a bi-exponential decay
function.
RESULTS
Effects of NB-DNJ and Digestion of hsCD2 with Endo
HA full-length cDNA clone encoding human CD2 (29) was
truncated and mutated to encode a soluble form of CD2 with three
potential glycosylation sites (Asn-65, Asn-117, and Asn-126) and
terminating at Lys-182 of the fully processed product as described
elsewhere(25) . The glucosidase I inhibitor, NB-DNJ, has
previously been shown to prevent the maturation of N-linked
oligosaccharides on recombinant human immunodeficiency virus gp120
expressed in CHO cells(30) . These sugars remain as
oligomannose forms that are readily cleaved with endo H under
denaturing conditions to single N-acetylglucosamine (GlcNAc)
residues. To determine the effect of NB-DNJ on the endo H sensitivity
of undenatured glycoprotein, hsCD2 expressing cells were cultured in
the absence or in the presence of 0.5, 1, 1.5, or 2 mM NB-DNJ.
Quantitative assays of the expression levels indicated that there was a
3-4-fold reduction in expression in the presence of 0.5-2
mM NB-DNJ (data not shown). After expression in the presence
of increasing concentrations of NB-DNJ the hsCD2 migrated more slowly
and as a narrower band on SDS-PAGE (Fig. 1), consistent with an
increase in the size and uniformity of its N-linked
glycosylation(30) .
Figure 1:
Effect of NB-DNJ on endo H
sensitivity of hsCD2 oligosaccharides. Soluble CD2 was expressed in the
presence of 0, 0.5, 1.0, 1.5, or 2 mM NB-DNJ, purified to
homogeneity and then digested overnight with endo H at 0.012, 0.06 or
0.3 I.U.B. units/mg of hsCD2. The digestion products (3 µg) were
then electrophoresed with undigested hsCD2 on a 15% SDS-PAGE gel
alongside equivalent amounts of the starting material for each
digestion. The gel was then stained with Coomassie
Blue.
Digestion of the 2 mM NB-DNJ-treated hsCD2 with limiting amounts of endo H produced
three smaller products each differing by 2-3 kDa (Fig. 1, lane 18). These are likely to correspond to hsCD2 forms
bearing zero, one, or two oligosaccharides indicating that all three
glycosylation sites can be utilized. There was a concomitant increase
in sensitivity to endo H with increasing NB-DNJ concentrations.
However, at the two highest NB-DNJ concentrations there was little
difference in the endo H sensitivity. Thus, 1.5 mM NB-DNJ
appears to completely inhibit glucosidase I. Densitometric analysis of
the gel revealed that at the highest NB-DNJ concentration 15% of the
hsCD2 is endo H-resistant indicating that a relatively inefficient
glucosidase I bypass mechanism exists in these cells (data not shown).
Some of the N-linked glycosylation of hsCD2 expressed in the
absence of NB-DNJ was also sensitive to endo H. The 2-3-kDa
change in SDS-PAGE mobility is consistent with the presence of a single
unprocessed site on hsCD2 expressed in CHO cells as observed
previously(26) . This contrasts with rat sCD2 expressed in CHO
cells which is completely endo H-resistant(31) . Milligram
quantities of hsCD2 were produced in the presence of NB-DNJ, purified
and treated with endo H. The digested material was then purified to
homogeneity by lectin affinity chromatography and gel filtration
chromatography for functional studies and crystallization trials (Fig. 2, lane 2). The electrophoretic mobility of the
endo H-treated hsCD2 suggested that the oligosaccharides had been
removed from each glycosylation site. Using methods which
quantitatively release amino sugars (incubation with 6 N HCl
at 100 °C for 4 h), 3.36 ± 0.31 and 14.79 ± 0.32 mol
of GlcNAc/mol of protein were detected in endo H-treated and untreated
hsCD2, respectively. Mass spectrometric analysis of the endo H-treated
hsCD2 gave a mass expected for the polypeptide backbone with three
GlcNAc residues (21, 575 Daltons; data not shown). This data indicates
that all three glycosylation sites are fully utilized in CHO cells, and
that endo H truncates the oligosaccharides at each site to single
GlcNAc residues.
Figure 2:
Gel
electrophoretic analysis of the purified endo H and PNGase F treated
hsCD2. Three micrograms of untreated hsCD2 (lane 1), 3 µg
of hsCD2 expressed in the presence of 1.5 mM NB-DNJ that had
been endo H-treated and lectin purified (lane 2) and 3 µg
of PNGase F-treated hsCD2 that had been purified by gel filtration
chromatography (lane 3) were electrophoresed on a 15% SDS-PAGE
gel. The gel was then stained with Coomassie
Blue.
Ligand Binding Properties of Endo H-treated
hsCD2Previous studies of the interaction of rat CD2 with its
ligand CD48 (24, 32) and of human CD2 with its ligand
CD58 (25) have shown that the BIAcore instrument (33) offers significant advantages over conventional assays for
analyzing the affinity and kinetics of weak protein interactions. The
instrument uses the optical phenomenon of surface plasmon resonance to
detect binding of macromolecules to ligands immobilized on a dextran
matrix within a small flow cell. An important advantage of the
BIAcore is that interactions are followed in real time.
This provides kinetic data which enable the binding of monomers to be
readily distinguished from that of aggregates, thereby reducing the
likelihood that the measured affinities are artefactually
high(24, 32) .The binding affinities of sCD58,
prepared as described elsewhere(25) , for untreated hsCD2 and
for endo H-treated hsCD2 prepared after expression in the presence of
NB-DNJ, were measured by equilibrium binding analysis on the
BIAcore , as described previously (24) . Endo
H-treated hsCD2 was compared with untreated hsCD2 by injecting sCD58 at
increasing concentrations through flow cells in which either untreated
or endo H-treated hsCD2 had been immobilized (Fig. 3A).
sCD58 clearly binds endo H-treated hsCD2 and untreated hsCD2 with
similar affinities (Fig. 3A). Scatchard plots of the
data (Fig. 3A, inset) indicated that the
affinities of sCD58 for untreated and endo H-treated hsCD2 were K 7 µM and 9
µM, respectively. While the affinity of endo H-treated
hsCD2 for sCD58 was essentially unchanged, this does not rule out the
possibility that the kinetics of binding are altered by glycosidase
treatment. Very low affinity interactions, such as those between rat
CD2 (24) and human CD2 (25) and their respective
ligands, reach equilibrium very rapidly, making kinetic analysis of the
association phase impossible on the BIAcore . However, the
dissociation phase of such interactions can usually be analyzed, and so
the dissociation rates of untreated and endo H-treated hsCD2 were
compared (Fig. 4A). It has previously been shown that
the apparent dissociation rate constant (k )
observed on the BIAcore is slower than the actual k because 1) it takes time for the dissociated
protein to wash out of the flow cell and 2) rebinding can occur during
this washing phase(24, 25) . As a result, the measured k values shown in this study represent a lower
limit for the actual k and are used here for
comparative purposes. Under identical experimental conditions sCD58
dissociated from untreated and endo H-treated hsCD2 at about the same
rate (with observed values of k 0.8
s and 0.7 s , respectively). In
both cases the shape of the dissociation curve was mono-exponential,
consistent with the bound sCD58 having a single k (Fig. 4A). A similar result was obtained with
endo H-treated hsCD2 binding to immobilized sCD58 (not shown).
Antibody Binding Properties of Endo H-treated
hsCD2Concomitant loss of antibody binding capacity accompanied
the loss of the CD58 binding function when a proteolytic fragment of
human CD2 was deglycosylated(26) . To compare their antibody
binding properties, untreated and endo H-treated hsCD2 were covalently
immobilized in BIAcore flow-cells and then thirteen
purified anti-CD2 mAbs were sequentially injected for six minutes into
the flow cells and eluted with 10 mM HCl. These mAbs include
seven that block ligand binding and bind to ``region 1'' on
domain 1 of CD2 (9.6, 7E10, MT110, MT910, 95-5-49, T11/3PT2H9 and 9-2),
five that also block ligand binding and bind to ``region 2''
on domain 1 (T11/3T4-8B5, NU-TER, CLB-T11/1, TS1/8.1.1, and F92-3A11)
and one that does not block ligand binding and which binds to
``region 3'' on domain 2 (OCH.217)(20) . Changes in
responses of 3,500-6,500 RU upon injection of the mAbs indicated
that each of the mAbs bound strongly to the immobilized proteins and
that binding to the untreated and endo H-treated molecules was
essentially indistinguishable (Fig. 5A). It is
noteworthy that both untreated and endo H-treated hsCD2 were unaffected
by exposure to 10 mM HCl.
Figure 5:
Binding
of anti-CD2 mAbs to untreated, endo H-treated, and PNGase F-treated
hsCD2. Panel A, ascites (1 in 20 dilution) containing the
indicated human CD2 mAbs was injected for 6 min through flow cells with
immobilized untreated (2678 RU) or endo H-treated (3502 RU) hsCD2.
Bound mAbs were eluted with 10 mM HCl (arrow) prior
to injection of the subsequent mAb. The flow rate was 5
µl min . Panel B, ascites (1 in 50
dilution) containing the indicated human CD2 mAb was injected for 10
min through flow cells in which untreated hsCD2 (4689 RU), endo
H-treated hsCD2 (5955 RU), and PNGase F-treated hsCD2 (5568 RU) were
immobilized. The flow rate was 3
µl min .
Crystallization and Structural Analysis of Endo H-treated
hsCD2During structural studies, it was found that the endo
H-treated hsCD2 readily formed crystals which diffract to 2.5-Å
resolution (Fig. 6). The crystals were of sufficient quality to
yield a high resolution structure for the extracellular region of human
CD2 which showed a single well defined main-chain conformation
throughout(8) . The overall structure is very similar to that
of endo H-treated rat sCD2 (9) with both homologues consisting
of two domains with standard IgSF topology. The ligand binding GFCC`C"
face of hsCD2 domain 1 is generally well defined, and the flexibility
of the loops is not substantially greater than that seen in the rat
sCD2 structure; the human and rat domain 1 structures differ by only
0.93-Å root mean square distance for 90 equivalent
residues(8) . The similarity of the two structures confirms
that the endo H-treated hsCD2 is not structurally disordered. The
result also indicates that the use of NB-DNJ represents a useful
alternative to utilizing glycosylation mutants (31) for
producing natively folded glycoproteins with endo H-sensitive
oligosaccharides.The ligand and antibody-binding data alone do not
rule out the possibility that the single GlcNAc left by endo H
digestion directly stabilizes the ligand binding face of hsCD2.
However, the location of the GlcNAc residue on domain 1 of the hsCD2
crystal structure indicates that the monosaccharide is unlikely to
stabilize the protein structure in general and the spatially distant
GFCC`C" face in particular (Fig. 7).
Figure 7:
Location of the domain 1 GlcNAc residue in
the crystal structure of endo H-treated hsCD2. Domain 1 is shown in
space-filling format with the line of view parallel to the GFCC`C`` and
DEBA faces. The side chains of residues previously shown to form part
of the CD58 binding site (left) and the GlcNAc residue left by
endo H treatment (right) are shaded grey (the
mutagenesis of human CD2 is discussed in detail by Bodian et
al.(8) ).
Properties of PNGase F-treated hsCD2To confirm
that the GlcNAc residue does not stabilize the GFCC`C" face, the ligand
and antibody binding properties of PNGase F-treated hsCD2 were
determined. PNGase F completely removes the oligosaccharides from
glycosylation sites in contrast to endo H which leaves a single GlcNAc
residue. Using relatively high concentrations of enzyme and after
purification by gel filtration the molecular mass of the protein was
reduced to that of the polypeptide backbone (20,966 daltons; Fig. 2, lane 3). Amino sugars were undetectable in
hydrolysates of the purified protein, and mass spectrometric analyses
of the PNGase F-treated protein were consistent with the expected mass
of the polypeptide backbone (data not shown). The gel filtration step
of the purification procedure indicated that the fully deglycosylated
hsCD2 had a significant tendency to aggregate. Therefore, binding
experiments were always conducted immediately following gel filtration.
Nevertheless kinetic analysis of the dissociation of PNGase F-treated
hsCD2 from sCD58 indicated that the PNGase F-treated hsCD2 contained
multimeric aggregates even when used immediately (see below).PNGase
F-treated hsCD2 could not be coupled at high levels to the dextran
matrix of the BIAcore flow cell (not shown) and so its
affinity for sCD58 was determined in the opposite orientation, with
sCD58 immobilized. When untreated or PNGase F-treated hsCD2 were
injected over sCD58 they both bound with a similar affinity (Fig. 3B). The affinities determined from a Scatchard
plot were K 3 and 3.2 µM for
untreated and PNGase F-treated hsCD2, respectively (Fig. 3B, inset). It should be noted that the
affinities measured in this study (3-9 µM) were
obtained at 25 °C for comparative purposes and are slightly higher
than the affinity at 37 °C (22 µM) obtained previously
for the interaction of sCD2 and sCD58(25) . In contrast to
untreated and endo H-treated hsCD2, PNGase F-treated hsCD2 dissociated
from immobilized sCD58 in two phases (Fig. 4B), with
fast initial dissociation (k 0.8
s ) and then some slow dissociation (k 0.16 s ), suggesting that a
proportion of the PNGase F-treated hsCD2 has a high avidity. This high
avidity binding is specific since it is not seen when PNGase F-treated
hsCD2 is injected over 1) a control flow-cell with no immobilized
protein (Fig. 4B) or over 2) immobilized CD58 which had
been pre-saturated with the inhibitory mAb TS2/9 (data not shown). The
observation that PNGase F-treated hsCD2 has a tendency to aggregate in
solution during purification (see above) suggests that this high
avidity binding represents the binding of multimeric aggregates of the
PNGase F-treated hsCD2. Although the immobilization of PNGase F-treated
hsCD2 was difficult and relatively inefficient, the binding of the
regions 1-, 2-, and 3-reactive mAbs, T11/3PT2H9, TS1/8.1.1, and OCH.217
was tested and each was shown to bind to the immobilized PNGase
F-treated protein (Fig. 5D).
DISCUSSION
The results of this study indicate that the structural
integrity of human CD2 is glycosylation independent. First, the
affinity of two-domain hsCD2 for its ligand, CD58, and the kinetics of
this interaction are not significantly affected by truncation of the
oligosaccharides to single GlcNAc residues with endo H. Second, the
binding of ligand-blocking and other mAbs to endo H-treated hsCD2 is
essentially indistinguishable from the binding of the same mAbs to
untreated hsCD2. The antibody epitopes of protein antigens with
significant secondary structure are usually formed by discontinuous
polypeptide segments (34) and thus antibody binding can
generally be considered to be good evidence for the correct folding and
conformation of protein antigen derivatives if the antibodies also
recognize the correctly-folded native antigen. Third, since local or
global losses in structural integrity would be expected to prevent the
crystallization of hsCD2 as this depends on the formation of stable,
reproducible lattice contacts, the crystallization of the endo
H-treated hsCD2 implies that the protein is not destabilized by
oligosaccharide truncation. It is not inconceivable, however, that the
endo H-treated hsCD2 adopts a new configuration that is sufficiently
stable to crystallize. This possibility seems unlikely given that the
crystallographic analysis has shown that the endo H-treated hsCD2
consists of two domains with conventional IgSF folds(8) . The
structural analysis also indicates that the apparent stability of the
ligand binding face is unlikely to be due to any stabilizing effect of
the single GlcNAc residue located on the DE loop of domain 1. Finally,
hsCD2 fully deglycosylated with PNGase F bound CD58 with an affinity
similar to that of untreated hsCD2 and bound a series of anti-CD2 mAbs.
The slightly reduced dissociation rate for the binding of PNGase
F-treated hsCD2 to immobilized CD58 is more likely to be due to
aggregation of a fraction of the deglycosylated hsCD2 molecules during
the experiment than to disruption of the structure per se. The
stability of human CD2 in the absence of glycosylation is consistent
with the view that the evolutionary success of the IgSF reflects the
ability of IgSF domains to form stable structural units for the
presentation of protein recognition motifs. The results of this
study contrast with those of Recny et al.(26) who
have proposed that the ligand binding function and stability of CD2 are
glycosylation-dependent. The conclusions of that study were based on
two observations. First, deglycosylated CD2 domain 1, produced by
proteolysis of a two domain form of hsCD2 expressed in Chinese hamster
ovary cells, fails to bind CD58 and anti-CD2 mAbs. Second, the removal
of the domain 1 glycosylation site at Asn-65 by mutagenesis also
prohibits ligand and mAb binding to cell-surface expressed CD2. As an
explanation for these observations, Withka et al.(35) and Wyss et al.(36) have suggested
that the Asn-65 oligosaccharide interacts with and stabilizes residues
surrounding the GFCC`C" face involved in ligand binding by filling a
cavity between the BC, C`C", and FG loops at the top of domain 1. The present experiments do not provide an explicit explanation for
the contrary data of Recny et al.(26) . The first
observation, that in the absence of domain 2 deglycosylated CD2 domain
1 loses its ligand and antibody binding properties, is not consistent
with studies of rat CD2 which have shown that domain 1 of the rat
homologue retains its ligand and mAb binding properties when expressed
in bacteria in an unglycosylated state and in the absence of domain
2(15, 37) . Inspection of the crystal structures of
human and rat CD2 fails to reveal any obvious differences between rat
and human CD2 domain 1 that could account for the differing stabilities
of the isolated unglycosylated domains. The B factors for residues of
domain 1 in the human and rat sCD2 crystal structures, which give some
insight into the overall stability of the domain, are not significantly
different for the two homologues(8) . The PNGase F-treated
hsCD2 used in the present studies did tend to aggregate as discussed
above, and it is conceivable that this is exacerbated by proteolysis.
However, the interface residues located between domains 1 and 2 of
human and rat CD2 are very highly conserved(8) , suggesting
that exposure of this interface in human CD2 is unlikely to reduce its
stability any more than exposure of the same region of rat CD2 domain
1. Finally, the side chain of Asn-65 and the GlcNAc moiety attached to
this residue project toward the interface region of the molecule (data
not shown); assuming that this reflects the orientation of the intact
oligosaccharide, there are no conspicuous hydrophobic residues that are
likely to be shielded by the intact oligosaccharide and exposed by
deglycosylation. Irrespective of the underlying cause of these
differences, the two domain form of sCD2 used in the present study more
closely resembles the natural state of CD2 than does the proteolytic
fragment studied by Recny et al. It therefore seems reasonable
to conclude that the in vitro behavior of two domain sCD2 more
faithfully reflects the structural properties of the molecule in
vivo. It is less difficult to explain the second observation
that the ligand and antibody binding properties of human CD2 expressed
at the cell surface are disrupted by the mutation of Asn-65
Gln(26) . It is now a widely held view that the folding and
stability of glycoproteins is, in many cases, glycosylation
dependent(38) . Much of the evidence supporting this view has
been obtained from experiments in which glycosylation has been blocked
with inhibitors such as tunicamycin or by mutation of glycosylation
sites. In many instances it is clear that under these conditions the
unglycosylated proteins do not leave the rough endoplasmic reticulum
and are degraded (see, for example, (39, 40, 41, 42) ). It can also
readily be envisaged that bulky, hydrophilic oligosaccharides might
influence protein folding pathways by limiting the number of
alternative kinetically accessible conformations or by reducing their
thermodynamic stability. Work in this laboratory on T cell receptor/CD4
chimeras has also shown that incorrectly folded proteins can in some
instances emerge from the endoplasmic reticulum as indicated by the
tendency of the chimeras to form disulfide-bonded aggregates outside
the cell(43) . Also, major histocompatibility class I and II
antigens reach the surface of transfected cells in the absence of
 -microglobulin and invariant chain, respectively, and
these antigens both fail to bind conformationally sensitive
antibodies(44, 45) . Consistent with the observations
of Recny et al.(26) >90% of human CD2 domain 1
expressed in an unglycosylated state in Escherichia coli forms
large aggregates and the remaining material appears to be incorrectly
folded according to antibody binding assays(37) . Thus, the
inability of the cell-surface expressed Asn-65 mutant of CD2 to mediate
antibody and ligand binding (26) may be due to incorrect
folding in the endoplasmic reticulum and its subsequent transport to
the surface in an inappropriately folded, or unfolded, state. These
studies of deglycosylated CD2 emphasize the difficulty of
distinguishing, on the basis of mutational and inhibitor studies,
between any effects of glycosylation on protein folding and any role in
maintaining protein conformation once folding is complete. The
post-folding, structural role of glycosylation has not thus far been
explored in great detail presumably because it is relatively difficult
to deglycosylate glycoproteins under non-denaturing conditions in
vitro. Structural comparisons of naturally occurring glycosylated
and unglycosylated forms of bovine pancreatic RNase by crystallographic (46) and solution H NMR analyses (47, 48) indicate that glycosylation has little effect
on the overall conformation of the enzyme although studies of
hydrogen-deuterium solvent exchange rates have indicated that the
oligosaccharide enhances the global dynamic stability of the
protein(47, 49) . Conversely, structural studies of
glycoproteins and glycopeptides suggest that N-linked
oligosaccharides are largely unaffected by the presence of the protein (48, 50, 51) . Molecular dynamic simulations
of the interaction of the oligosaccharide of RNase B with the
polypeptide backbone suggest that while the
di-N-acetylchitobiose core is relatively rigid, flexibility in
the linkages to outer arm residues of the oligosaccharide and in the
asparagine-GlcNAc linkage allow the oligosaccharide potentially to
contact relatively large areas of the protein surface(52) . In toto, these studies suggest that, while oligosaccharides
may significantly influence the functions of glycoproteins, this is
probably likely to be due in most cases to steric effects, and that
oligosaccharides forming intimate contacts with the protein backbone
which influence the polypeptide conformation are likely to be rare. CD2
may be unusual in that nuclear Overhauser effects involving a terminal
mannose residue(s) of the Asn-65 oligosaccharide and Gly-90 of domain 1
have been tentatively identified (35, 36) . While the
current study does not rule out the possibility that the domain 1
oligosaccharide interacts directly with CD2 in this way in
vivo, the weight of evidence is against the view that such
interactions affect the conformation of the domain or are important for
ligand binding.
FOOTNOTES
- *
- This work was supported by the
Human Frontier Science Program. The costs of publication of this
article were defrayed in part by the payment of page charges. This
article must therefore by hereby marked
``advertisement'' in accordance with 18 U.S.C.
Section 1734 solely to indicate this fact.
- §
- To whom correspondence should be addressed.
Tel.: 0865-275597; Fax: 0865-275591.
- ¶
- P. A.
van der Merwe is an Oxford Nuffield Medical Fellow.
- (
) - The abbreviations used are: IgSF, immunoglobulin
superfamily; endo H, endoglycosidase H; PNGase F,
peptide:N-glycosidase F; NB-DNJ, N-butyldeoxynojirimycin; GlcNAc, N-acetylglucosamine;
CHO, Chinese hamster ovary; PAGE, polyacrylamide gel electrophoresis;
RU, response unit(s); hsCD2, human soluble CD2; mAb, monoclonal
antibody.
ACKNOWLEDGEMENTS
We are indebted to Gunilla B. Karlsson and Frances M.
Platt for helpful discussion, to Antony Willis for assistance with the
amino acid analysis, to David Harvey and Robin Aplin for help with the
mass spectrometric analyses, and to Paul C. Driscoll, Marion H. Brown,
and Don W. Mason for critical appraisal of the manuscript.
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