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(Received for publication, December 7, 1994; and in revised form, December 21, 1994) From the
We have analyzed the structure of the active site of
monogalactosyldiacylglycerol (MGDG) synthase from spinach chloroplast
envelope. Since purification of this membrane-embedded enzyme yielded
such low amounts of protein that analyses of the amino acid sequence
were so far impossible, we used indirect strategies. Analyses of the
inhibition of MGDG synthase by UDP and of its inactivation by
citraconic anhydride first indicated that the enzyme contained two
functionally independent and topologically distinct binding sites for
each substrate. Whereas MGDG synthase binds both the nucleotidic part
of UDP-Gal and the acyl chains of 1,2-diacylglycerol, UDP is a
competitive inhibitor relatively to UDP-Gal, while it does not compete
with 1,2-diacylglycerol for binding on the enzyme. The UDP-Gal-binding
site contains lysine residues, as demonstrated for UDP-Gal-binding
sites from all galactosyltransferases studied so far. Radiolabeling of
MGDG synthase by sulfur labeling reagent, a
Monogalactosyldiacylglycerol (MGDG), ( Analyses of the kinetic properties of
partially purified MGDG synthase (Maréchal et
al., 1994a), using mixed micelles containing
1,2-diacylglycerol, CHAPS, and phosphatidylglycerol (PG), demonstrated
that the ``surface dilution'' kinetic model proposed by Deems et al.(1975) was valid for MGDG synthase.
Maréchal et al. (1994a) showed that MGDG
synthase was a sequential, either random or ordered, bireactant system.
The affinity of MGDG synthase for each substrate (UDP-Gal and
1,2-diacylglycerol) did not vary when the cosubstrate supply was
varied. To investigate the functional independence of substrates
binding within MGDG synthase active site, we undertook an analysis of
the enzyme structure using inhibitors and protection of the enzyme by
its substrates. In this study, we distinguish inactivation of
MGDG synthase, due to a modification of enzyme structure (such as a
covalent linkage with an amino acid reagent or the extraction of a
protein-associated metal with a chelating agent) from inhibition, due to the binding of a substrate analogue.
Figure 1:
MGDG synthase inhibition by UDP. The
representation is according to Lineweaver and Burk. Initial velocities
of MGDG synthase (corresponding to 7 µg of protein) activity were
determined as described under ``Experimental
Procedures.'' A, UDP-Galactose is the varied substrate,
dioleoylglycerol mol fraction is kept constant (0.03 mol fraction). The
family of curves exhibits a competitive inhibition pattern with K
These results demonstrate that UDP
binds competitively to the UDP-Gal binding site of MGDG synthase, while
it does not interfere with the fixation of the second substrate,
1,2-diacylglycerol, in its specific binding site. Thus, they provide
additional experimental support for our previous hypothesis
(Maréchal et al., 1994a) that the
catalytic site of MGDG synthase presents two distinct binding sites, i.e. one for each substrate. MGDG synthase thus presents some
similarities with other galactosyltransferases: (a) UDP is in
general a competitive inhibitor for glycosyltransferases relatively to
their UDP-sugar donors (Beyer et al., 1981;
Doering et al., 1989) and (b) enzymes such
as the UDP-Gal:3- Comparison of MGDG synthase with
1,2-diacylglycerol-binding proteins is most interesting. For instance,
enzymes from the protein kinase C family possessing a
1,2-diacylglycerol regulatory domain and all eukaryotic
1,2-diacylglycerol kinases, contain 1,2-diacylglycerol-binding domains
that have very high homology (Sakane et al., 1990;
Schaap et al., 1990). As we have demonstrated for
MGDG synthase, kinetic analyses of diacylglycerol kinases showed a
functional independence of cosubstrates (1,2-diacylglycerol and ATP)
binding (Kanoh and Ohno, 1981; Bishop et al., 1986;
Wissing and Wagner, 1992). Amino acid sequence analyses of porcine
diacylglycerol kinase (Sakane et al., 1990) and human
diacylglycerol kinase (Schaap et al., 1990) also
suggest that 1,2-diacylglycerol binds to a domain distinct from that of
ATP. Moreover, the 1,2-diacylglycerol-binding site of MGDG synthase
(Maréchal et al., 1994a, 1994b), like
that of protein kinase Cs (Hannun et al., 1991; Azzi et
al., 1992) and diacylglycerol kinases (Bishop et al.,
1986), has a specificity for 1,2-diacylglycerol molecules that differs
according to fatty acid composition. However, similarity of the
1,2-diacylglycerol binding site between all of these enzymes is not
complete since phorbol esters do not inhibit MGDG synthase (data not
shown) nor diacylglycerol kinases (Sakane et al., 1990). In
contrast, phorbol esters bind to the 1,2-diacylglycerol binding site
from most protein kinase C (Nishizuka, 1989). These observations
prompted us to further characterize the two substrate binding sites of
MGDG synthase. We therefore decided to investigate their structure by
using specific reagents for various amino acids. We first investigated
whether free amino groups were associated with substrate-binding sites.
Table 1led to several other conclusions. First, the binding of
each substrate, UDP-Gal or 1-2,diacylglycerol, on MGDG synthase
is possible in absence of the other one. This is important to
understand the enzyme mechanism; since MGDG synthase inactivation by
citraconic anhydride was prevented after preincubation with either
substrate (Table 1), substrate binding to the enzyme is therefore
likely to be random. Second, the marked sensitivity of MGDG synthase to
citraconic anhydride clearly demonstrate that primary amino groups do
exist in the vicinity of both substrate binding sites. Interestingly,
the presence of lysine residues in the UDP-Gal binding site was also
demonstrated in animal galactosyltransferases (Yadav and Brew, 1990)
and might be essential for catalysis. Because addition of the enzyme
substrates prior to addition of lysine-blocking reagent prevented MGDG
synthase inactivation, we decided to use amino-group labeling reagents
to characterize the envelope proteins that could be specifically
protected from labeling by the addition of UDP-Gal or
1,2-diacylglycerol.
MGDG synthase fractions were
incubated for 1 h with SLR, (following a preincubation in presence or
absence of the enzyme substrates) and analyzed by SDS-polyacrylamide
gel electrophoresis and autoradiography. The protein pattern of the
different fractions and their labeling are presented respectively in Fig. 2, A and B. As expected because of the
low selectivity of SLR, almost each protein present in the fraction was
labeled (Fig. 2). However, some polypeptides were relatively
more intensively labeled by SLR than others, compared with their
Coomassie Blue staining, probably because of a higher amount of lysine
residues exposed to the blocking agent. For instance, two polypeptides
having a molecular mass of 21 and 22 kDa were rather strongly labeled
with
Figure 2:
Differential radiolabeling of partially
purified MGDG synthase by SLR. Aliquots (40 µg protein) of a
partially purified MGDG synthase fraction (see
``Experimental Procedures'') were incubated for 1 h
at 25 °C with 1.3 mM PG with no additive (lane1), with 1 mM UDP-Gal (lane2), or with 80 µM 1,2-dioleoylglycerol (lane3) or 80 µM 1,2-dioleoylglycerol,
and 1 mM UDP-Gal (lane4). Each fraction was
subsequently incubated with 25 µl of [
We observed that
preincubation of the partially purified enzyme fraction with 1 mM UDP-Gal, 1 h before adding SLR, had no apparent effect on the
labeling pattern (Fig. 2B, lane2).
In contrast, when 1,2-dioleoylglycerol was added prior to SLR (Fig. 2B, lanes3 and 4),
the intensity of labeling of 3 polypeptides around 20 kDa was
remarkably modified (Fig. 2, arrows); the labeling of a
22-kDa polypeptide markedly decreased, whereas labeling of a 21- and a
19.5-kDa polypeptides decreased to a lesser extent. No other specific
change in protein labeling due to the 1-h preincubation with
1,2-dioleoylglycerol could be noticed. Since (a) the 21- and
22 kDa-polypeptides are barely colored with Coomassie Blue, (b) the three polypeptides around 20 kDa show differential
radiolabeling (in the absence and in the presence of 1,
2-diacylglycerol) with [
Figure 3:
MGDG synthase inactivation by NEM. A, NEM supply is in the µM range. B, NEM
supply is in the mM range (inset). MGDG synthase
activity of envelope vesicles prepared in the absence of DTT was
measured at increasing concentrations of NEM (A and B). After envelope solubilization by 6 mM CHAPS, as
described under ``Experimental Procedures,'' MGDG
synthase activity was measured in the absence of DTT (
We then
investigated the availability of free -SH groups in MGDG synthase using
NEM, a -SH (-S Partially purified MGDG
synthase fractions were then used to probe the presence of free -SH
groups in the vicinity of the substrate binding sites. Such enzyme
fractions behave almost like solubilized envelope membranes with
respect to NEM sensitivity (Table 4) and protection by DTT (see Table 3and Table 4). Table 4demonstrates that
preincubation of the enzyme fraction with UDP-Gal (or PG alone) did not
affect MGDG synthase inactivation by NEM. Interestingly,
galactosyltransferases are also inactivated by NEM, but the enzymes are
protected by preincubation in presence of UDP-Gal (Kitchen and Andrews,
1974). Apparently, the free reduced cysteine identified by Yadav and
Brew(1990) in the UDP-Gal binding domain of various
galactosyltransferases seems not to have any equivalent in the
UDP-Gal-binding site of MGDG synthase; -SH groups sensitive to NEM seem
to be located in different domains in galactosyltransferases and in
MGDG synthase.
In contrast with UDP-Gal, preincubation with
1,2-dioleoylglycerol (and PG) protected MGDG synthase against NEM (Table 4). This result indicates that reduced cysteine residues,
accessible to NEM, are located very close to the 1,2-diacylglycerol
binding site and are topologically distinct from UDP-Gal binding site.
This situation shows some similarity with the 1,2-diacylglycerol domain
from protein kinase C, which contain characteristic tandem repeats of
cysteine-rich motifs; analyses of the structure (Hubbard et
al., 1991) of the amino acid sequence (Hannun et al.,
1991) and of targeted mutations (Quest et al., 1994) of
protein kinase C, demonstrated that zinc cations from
1,2-diacylglycerol binding site were coordinated to 6 cysteine residues
and 2 histidine residues. Similarly, analyses of amino acid sequences
of porcine diacylglycerol kinase (Sakane et al., 1990) and of
human diacylglycerol kinase (Schaap et al., 1990, Fujikawa et al., 1993) demonstrated the existence of two
Cys
We then analyzed the effect of various chelating agents
(EDTA, 8-hydroxyquinoline, ortho-phenanthroline) or with
phenanthrene (a nonchelating analogue of ortho-phenanthroline). In contrast with EDTA and
8-hydroxyquinoline, ortho-phenanthroline and phenanthrene are
hydrophobic compounds (Fig. 4). Table 5shows that among
the three chelating agents, only ortho-phenanthroline inhibits
MGDG synthase. Incubation with phenanthrene did not alter MGDG synthase
activity. Therefore, the inhibition by ortho-phenanthroline is
not due to the nonspecific intercalation of this planar molecule in a
hydrophobic site of the enzyme (Scrutton, 1973) but to its chelating
property (Powers and Harper, 1986). Moreover, incubation with ortho-phenanthroline in the presence of 1 mM ZnCl
Figure 4:
Structure of the metal chelating agents
used (EDTA, 8-hydroxyquinoline, ortho-phenanthroline,
phenanthrene). Phenanthrene, a nonchelating analogue of ortho-phenanthroline, has been used as a control for ortho-phenanthroline effect. Ortho-phenanthroline is
the most hydrophobic chelating agent, and differs from the others by
its strong specificity for zinc and iron and because it does not
interact with calcium (Power and Harper, 1986). Elements in boldface characters are involved in metal
coordination.
A possible
explanation for these results is that MGDG synthase has two
metal-binding sites within the hydrophobic core of the enzyme: (a) one site (probably containing histidine residues) that
could interact with zinc at pH 7.8, leading to MGDG synthase inhibition
and (b) another site that could be strongly associated with a
metal. This last domain is not exposed to hydrophilic chelating agents
(EDTA and 8-hydroxyquinoline) and requires a very hydrophobic chelating
molecule (ortho-phenanthroline) to remove its associated
metal. Fig. 5shows time course inactivation of MGDG synthase
by 5 mMortho-phenanthroline at 25 °C in the
absence or in the presence of each substrate of the enzyme. When
UDP-Gal or PG were added to the incubating medium, inactivation by ortho-phenanthroline was not affected. In contrast, the
addition of 1,2-dioleoylglycerol (together with PG) was sufficient to
prevent MGDG synthase inactivation by ortho-phenanthroline (Fig. 5). This result demonstrates that the metal associated
with the apo-MGDG synthase is located in the vicinity of the
1,2-dioleoylglycerol binding site and not in the vicinity of the
UDP-Gal binding site. Such a result fits well with our previous
observation (Table 4) that reduced cysteines lie in the vicinity
of the 1,2-diacylglycerol binding site and provides some indirect
evidence for the occurrence of metal-cysteine clusters within MGDG
synthase.
Figure 5:
Protection of MGDG synthase against
inactivation by ortho-phenanthroline. Purified MGDG synthase,
pH 6.0, was incubated for 4 h at 25 °C. Incubations were carried
out with 1 mM UDP-Gal (+UDP-Gal), with 160
µM 1,2-dioleoylglycerol solubilized in presence of 1.3
mM PG (+PG + 1,2-DG), and with 5 mMortho-phenanthroline (+O-p). After 1, 2, 3,
and 4 h, 200-µl aliquots were removed to measure the remaining
activity (see ``Experimental Procedures''). The
activity is expressed as a percentage of the initial
activity.
Fig. 5also demonstrates that when preincubated in
presence of 1,2-diacylglycerol, MGDG synthase is not only protected
against inactivation by ortho-phenanthroline, but it is
activated. This remarkable effect might be due to the protection of
another site reacting with metals, such as the site responsible for
MGDG synthase inhibition by Zn The inactivation kinetic
of MGDG synthase by ortho-phenanthroline is shown in Fig. 6. MGDG synthase, incubated with 0.1 mMortho-phenanthroline at 4 °C, was assayed every 3 h
as described under ``Experimental Procedures.'' Data
presented in Fig. 6A did not simply fit second-order
kinetic patterns for metal extraction by chelating agents (Dumas et
al., 1989; Omburo et al., 1992; Wang et al.,
1992). Theoretical curves presented in dashedlines in Fig. 6A and B show that inactivation
should follow an exponential decrease leading to total inactivation. In
contrast, kinetic of MGDG synthase inactivation follows a complex
pattern that could be analyzed as two successive second order events. A
first event, characterized by a second order constant k"a
= 1175 M
Figure 6:
Kinetic of the inhibition of MGDG synthase
activity by ortho-phenanthroline. Purified MGDG synthase, with
pH adjusted to 6, was incubated as described under
``Experimental Procedures'' for 33 h at 4 °C in
the presence of 0.1 mMortho-phenanthroline. At given
times, 200-µl aliquots were removed to measure the remaining
activity (see ``Experimental Procedures''). Top, the activity is expressed as a percentage of initial
activity. A control sample of MGDG synthase to which only water was
added (
MGDG synthase catalyses the transfer of a
Figure 7:
UDP-Gal and 1,2-diacylglycerol (1, 2-DAG)
binding sites in MGDG active site. A, in this case substrate
binding sites are totally separated, catalysis implies a deep
conformational change to allow galactose transfer. B, in this
case substrate binding sites partly intersect, and domains that bind
the nucleotidic part of UDP-Gal (UDP-) and the acyl groups of
1,2-diacylglycerol are topologically
distinct.
Despite some similarities (such as the involvement of lysine
residues in UDP-Gal binding), MGDG synthase seems not to share the main
properties of the eukaryotic galactosyltransferases. This is probably
because MGDG synthase is involved in glycerolipid biosynthesis (for a
review, see Joyard and Douce(1987)) and therefore manipulates
hydrophobic substrate and product. In contrast, comparison of MGDG
synthase with 1,2-diacylglycerol-binding proteins that have been
extensively studied in animals suggests that some biochemical links
might exist between chloroplast envelope MGDG synthase and enzymes from
the protein kinase C family and eukaryotic 1,2-diacylglycerol kinase
family. Moreover, recent studies (Schmidt-Schultz and Althaus, 1994)
report that MGDG (which is a very minor glycerolipid in animal tissues
but is a marker for myelination) from oligodendrocytes stimulates
protein kinase C
Volume 270,
Number 11,
Issue of March 17, 1995 pp. 5714-5722
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
BIOCHEMICAL ANALYSIS OF THE STRUCTURE AND OF THE METAL CONTENT (*)
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
CONCLUSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
S-labeled
lysine-blocking reagent, confirmed that MGDG synthase was a polypeptide
with a low molecular mass (around 20 kDa). The
1,2-diacylglycerol-binding site contains reduced cysteines and at least
one metal. The divalent cation(s) associated to apo-MGDG synthase was
not unambiguously identified, but the results suggest that it could be
zinc. Therefore, MGDG synthase presents some structural features in
common with diacylglycerol-manipulating enzymes, such as protein kinase
C and 1,2-diacylglycerol kinase, which are characterized by the
presence of a ubiquitous Cys
His
domain involved
in zinc coordination in their 1,2-diacylglycerol-binding domains.
)the major
plastid glycerolipid (Benson, 1964; Douce and Joyard, 1980), is
synthesized in plastid envelope membranes (Douce, 1974; Block et
al., 1983) by a UDPgalactose:1,2-sn-diacylglycerol
3-
-D-galactosyltransferase (EC 2.4.1.46), or MGDG
synthase. Despite its importance for chloroplast membrane biogenesis,
MGDG synthase is only a minor envelope protein
(Covès et al., 1987; Joyard and
Douce, 1987). This enzyme transfers a galactose from a water-soluble
donor, UDP-galactose (UDP-Gal), to a hydrophobic acceptor molecule,
1,2-diacylglycerol (Ferrari and Benson, 1961; Neufeld and Hall, 1964).
Teucher and Heinz (1991) and Maréchal et
al.(1991) independently purified several hundred-fold MGDG
synthase activity from spinach chloroplast envelope. In each case, the
final amount of enzyme was so low (in the range of microgram when
starting the purification from 0.1-g envelope proteins) that further
characterization of the protein or amino acid sequence determination
were almost impossible.
Materials
CHAPS, EDTA, 8-hydroxyquinoline,
phenanthrene, 1,2-dioleoylglycerol, PG, dithiothreitol (DTT), and UDP
were purchased from Sigma. ortho-Phenanthroline was from
Prolabo (France). Unlabeled and
C-labeled (11.0 GBq/mmol)
UDP-galactose were from Sigma and DuPont NEN, respectively. Unlabeled
and
S-labeled (30 TBq/mmol) tert-butoxycarbonyl-L-methionine-N-hydroxysuccinimidyl
ester (BOC-L-methionine-N-hydroxysuccinimidyl ester
or SLR, for Sulfur Labeling Reagent) were
from Fluka and Amersham Corp., respectively. Unlabeled and
C-labeled (189 MBq/mmol) N-ethylmaleimide (NEM)
were from Sigma and Amersham Corp., respectively.Purification of Spinach Chloroplasts Envelope
Membranes
All of the operations were carried out at 0-5
°C. Crude chloroplast were obtained from 3-4 kg of spinach (Spinacia oleracea L.) leaves and purified by isopycnic
centrifugation using Percoll gradients (Douce and Joyard, 1982).
Purified intact chloroplasts were then lysed in hypotonic medium, and
envelope membranes were purified from the lysate by sucrose gradient
centrifugation, as described by Douce and Joyard(1982). Envelope
membranes were stored, in liquid nitrogen, in 50 mM MOPS-NaOH,
pH 7.8, and 1 mM DTT.Solubilization and Partial Purification of MGDG
Synthase
Envelope membranes (100 mg of protein) were incubated
for 30 min at 0 °C in 100 ml of medium A (6 mM CHAPS, 50
mM MOPS-NaOH, pH 7.8, 1 mM DTT) containing 50 mM KH
PO
/K
HPO
. The
mixture was centrifuged for 15 min at 243,000 g (Beckman L2, rotor SW 40). The supernatant (80 ml, 1 mg of
protein/ml) containing MGDG synthase activity (7740 nmol of galactose
incorporated/h) was loaded (25-ml fractions) on a
Hydroxyapatite-Ultrogel (IBF, France) column (Pharmacia column C10/20,
25 ml of gel), equilibrated with medium A containing 50 mM KH
PO
/K
HPO
. The
proteins were eluted using a 50-265 mM KH
PO
/K
HPO
gradient
(in medium A; flow rate, 30 ml/h; fraction size, 1.5 ml). MGDG synthase
was eluted at 265 mM KH
PO
/K
HPO
(peak
3). Characterization of this fraction is given by
Maréchal et al.(1991).Assay of MGDG Synthase
Enzyme activity was assayed
in mixed micelles at 25 °C (Maréchal et
al.,1994a). PG (1,3 mM) and 1,2-diacylglycerol
(160 µM) dissolved in chloroform were first introduced
into glass tubes. After evaporation of the solvent under a stream of
argon, 200 µl of incubation medium, containing 50 mM MOPS-NaOH (pH 6.0 or 7.8), 4.5 mM CHAPS, 1 mM DTT, 250 mM KH
PO
/K
HPO
, and 250
mM KCl were added, and the tubes were vigorously mixed to
resuspend lipids. 200 µl (5 µg protein) of the fractions
containing MGDG synthase, in incubation medium, were then added and,
again, the tubes were vigorously mixed and finally were kept for about
1 h at 20 °C. The reaction was then started by the final addition
of 1 mM UDP-[
C]gal (37 Bq/µmol).
Initial velocity of the reaction was determined by time course
experiments. At given times, 120-µl aliquots were taken, the lipids
were extracted, and the radioactivity of the labeled lipids was
determined by liquid scintillation counting. The activity was expressed
as µmol of galactose incorporated/h/mg of protein. Experiments have
been reproduced at least three times.Incubation Conditions
Purified MGDG synthase (200
µl) was added to incubation medium containing 50 mM MOPS-NaOH (pH 6.0 or 7.8), 4.5 mM CHAPS, 1 mM DTT, 250 mM KH
PO
/K
HPO
and 250
mM KCl in a final volume of 400 µl. Incubations with
various reagents were carried out at 4 or 25 °C under gentle
agitation. In some experiments, 30-min preincubation with either PG
(1.3 mM) and 1,2-dioleoylglycerol (160 µM) or
with UDP-Gal (1 mM) preceded the assay of MGDG synthase
activity. When preincubation was done in presence of
1,2-dioleoylglycerol, PG was also added to solubilize
1,2-dioleoylglycerol (Maréchal et al.,
1994a). In this case, control experiments were done in presence of PG
alone. In other experiments, preincubation was followed by incubation
in presence of potent inhibitors or reagents. Specific conditions for
such experiments are described in legends of the corresponding tables
or figures. At the end of preincubation, the medium was completed with
the missing components required for the reaction medium to reach the
final concentrations for assay of MGDG synthase activity, i.e. 1.3 mM PG, 160 µM 1,2-dioleoylglycerol, and
1 mM UDP-Gal. The enzyme activity was expressed as a
percentage of that of the control incubated in the absence of the
potent inhibitors or reagents. When necessary, these were removed by
desalting on Biogel P-6DG (Bio-Rad) column (Pharmacia column C10/40, 30
ml of gel), equilibrated in reagent-free incubation medium. Proteins
were eluted at 24 ml/h flow rate, in 0.8-ml fractions.Inactivation Kinetic by Metal Chelators
We used
metal-free buffers for experiments involving chelating agents and metal
cations; metal traces were extracted after mixing with diphenyl
thiocarbazone 1 mg/l (Sigma) and successive washing with chloroform.
Metal solutions were prepared by dissolving CoCl
,
CuCl
, FeSO
, MgCl
, MnSO
,
or ZnCl
in metal-free 10 mM MOPS, which has been
adjusted to pH 6.0 to avoid metal-hydroxyl complexation. Kinetic of
enzyme inactivation by ortho-phenanthroline was analyzed as
described by Dumas et al.(1989). Purified MGDG synthase
fraction was incubated at 4 °C with excess ortho-phenanthroline (0.1 mM), and remaining activity
was determined by removing 200-µl aliquots at specified times. Data
obtained were analyzed as fitting the following equation
log(E
/E
) =
-k"[ortho-phenanthroline]
t,
where E
/E
is the fraction of
the remaining activity at time t, and k" is the
second rate order constant.Radiolabeling with
[
Fractions containing 40 µg of
purified MGDG synthase, preincubated in the absence or in the presence
of the substrates, were incubated with [
S]SLR
S]SLR
(25 µl, 1 MBq). After a 1-h incubation, proteins were precipitated
with 10% trichloroacetic acid for 1 h at 4 °C and centrifuged for
20 min at 14,000 g. Pellets were washed in 50 µl
of pure ethanol, 2 µl of 0.5 M NaCl, and 210 µl of
diethyl ether for 1 h at -20 °C and centrifuged for 20 min at
14,000
g. The supernatants were discarded, and the
protein pellets were subjected to electrophoresis in a 7.5-15%
acrylamide gradient in the presence of SDS, according to Chua(1980).
After Coomassie Blue staining, the gel was then dried after soaking in
10% glycerol and exposed overnight to hyperfilm-
max (Amersham
Corp.).Protein Determination
Protein concentration was
determined according to Lowry et al.(1951) using bovine serum
albumin as a standard.
MGDG Synthase Inhibition by UDP
When MGDG
synthase was assayed with UDP-Gal as the varied substrate and at fixed
1,2-diacylglycerol concentration, UDP is a competitive inhibitor (Van
Besouw and Wintermans, 1979; Covès et
al., 1988) with a value for the inhibition constant (K![]()
) of 23.5 ± 1.5
µM (Fig. 1A). However, when
1,2-diacylglycerol was used as the varied substrate, kinetic analysis
of MGDG synthase inhibition by UDP showed rather complex patterns that
were difficult to analyze (Covès et al.,
1988). We therefore analyzed the kinetic experiments with varied
1,2-diacylglycerol concentration according to the ``surface
dilution kinetic model'' (Deems et al., 1975), the
validity of which has been extensively verified for partially purified
MGDG synthase included in mixed micelles
(Maréchal et al., 1994a). In our
experimental conditions, the relevant expression of 1,2-diacylglycerol
concentration is the micellar surface concentration that can be
accurately expressed as mole fraction
[1,2-diacylglycerol/(1,2-diacylglycerol + CHAPS +
PG)]. Indeed, when we plotted inhibition of MGDG synthase activity
by UDP at fixed UDP-Gal concentration (1 mM) relative to
1,2-diacylglycerol mole fraction, we obtained a fairly simple graph,
coherent with a noncompetitive type of inhibition (Fig. 1B). The value for K![]()
calculated from these
experiments is 52 ± 16 µM (Fig. 1B).

= 23.5 ±
1.5 µM. B, dioleoylglycerol is the varied
substrate, and UDP-Gal concentration is kept constant (1 mM).
1/dioleoylglycerol is expressed in mol fraction according to the
surface dilution model. MGDG synthase inhibition by UDP shows a
noncompetitive pattern that calculated K
for UDP to be 52 ± 16 µM. K
were determined according to equations
from Segel (1975).
-N-acetylglucosamine
4-
-galactosyltransferase (EC 2.4.1.38) also possesses two distinct
substrate binding sites (Yadav and Brew, 1990, 1991). However, and in
contrast with what we observed (Maréchal et
al., 1994a), binding of one substrate increased the affinity of
the enzyme for its cosubstrate (Barker et al., 1972;
Powells and Brew, 1976). This major difference between MGDG synthase
and the other galactosyltransferases is not really surprising since one
of the two substrates for MGDG synthase, diacylglycerol, is highly
hydrophobic.MGDG Synthase Inactivation by Citraconic
Anhydride
Citraconic anhydride reacts with proteins at the
-lysine side chains and establishes a covalent modification of the
free amino groups that is reversible at acidic pH. Table 1shows
that MGDG synthase was partially inactivated after a 30-min incubation
with citraconic anhydride: 53% and only 3% of the control activity
remained after incubation, respectively, with 10 and 50 µM citraconic anhydride (Table 1), thus demonstrating that
amino acids with free primary amino groups are essential for enzyme
activity. Preincubation of the enzyme with PG alone induced a marked
increase of MGDG synthase sensitivity to citraconic anhydride: in these
conditions, only 13% of the control activity remained after incubation
with 10 µM citraconic anhydride (Table 1). This
suggests that PG probably induces a conformational change in the enzyme
structure leading to an increased sensitivity of the enzyme to
lysine-blocking reagents. Table 1also demonstrates that
preliminary 30-min incubations with the substrates protected the enzyme
against inactivation by the lysine-blocking agents (Table 1). For
instance, when the enzyme was preincubated with 1,2-diacylglycerol and
PG, 65% of the control activity remained after incubation with 10
µM citraconic anhydride, compared with only 13% when
preincubation was done with PG alone. Protection of MGDG synthase
activity by UDP-Gal was less obvious (Table 1) since the final
activity after incubation with 10 µM citraconic anhydride
(77% of the initial activity) had to be compared with the activity
without any preincubation (53% of the initial activity).
Labeling of MGDG Synthase Inactivation by
[
S]SLR
S-labeled tert-butoxycarbonyl-L-methionine hydrosuccinimidyl
ester (or SLR), like citraconic anhydride, reacts with proteins at the
-lysine side chains and is able to inactivate MGDG synthase
activity (Table 2). We also observed that preincubation of the
enzyme fraction with 1,2-diacylglycerol protected MGDG synthase against
inactivation by SLR (Table 2). In contrast, this was not the case
when the enzyme fraction was preincubated in presence of UDP-Gal (Table 2): primary amino groups in UDP-Gal binding site seem to
be more accessible to the lysine-blocking reagent than those in the
1,2-diacylglycerol binding site.
S, but only barely detectable after Coommassie Blue
staining (Fig. 2). In fact, one should keep in mind that not all
proteins are equally labeled: yields of 10-50% labeling are
typically obtained with SLR, depending on the content of amino groups
accessible to SLR in the protein and the molar ratio of protein to SLR
(technical note for SLR, Amersham Corp.).
S]SLR
(1 MBq) for 1 h at 25 °C under gentle agitation. Envelope proteins,
extracted as described under ``Experimental
Procedures,'' were then subjected to polyacrylamide gel
electrophoresis in a 7.5-15% acrylamide gradient in the presence
of SDS. After completion of the run, polypeptides were stained with
Coomassie Blue (A). The gel was dried and exposed overnight to
hyperfilm-
max, Amersham Corp. (B). Arrows show
polypeptides protected against [
S]SLR by
1,2-diacylglycerol.
S]SLR, and (c)
their radiolabeling seem to be related (i.e. when the labeling
of the 22-kDa polypeptide increases, those of the 21- and 19.5-kDa
polypeptides decrease and vice versa), it is therefore
possible that these three polypeptides could correspond to the same
polypeptide labeled with various amounts of SLR molecules. Indeed,
covalent binding of a single t-butoxycarbonyl-L-[
S]methionine
residue to an
-lysine side chain of a protein would increase its
molecular mass by about 0.2 kDa and would modify its global charge.
Thus, the presence of several accessible amino groups on the protein
would allow labeling with several SLR molecules and therefore would
result in enough increase of the electrophoretic mobility of a 19
kDa-polypeptide to reach apparent molecular mass of 19.5, 21 and 22 kDa
by SDS-polyacrylamide gel electrophoresis. Although an unambiguous
characterization of these three polypeptides is still lacking, the
observations shown in Fig. 2provide additional evidence for
MGDG synthase to be associated with a low molecular mass polypeptide,
around 20 kDa, as proposed by Teucher and Heinz(1991) and
Maréchal et al.(1991). These results
raise the question of how such a low molecular mass polypeptide could
be compatible with substrate binding in two separate domains. A
possibility is that MGDG synthase could be a multimeric enzyme.MGDG Synthase Protection by DTT and Inactivation by
NEM
DTT in the medium used to solubilize envelope protein by
CHAPS was essential to prevent loss of activity
(Covès et al., 1986, 1987). Indeed, Fig. 3A shows that the activity of solubilized envelope in
presence of 1 mM DTT was more than 2 times higher than the
activity of the same envelope preparation but solubilized in the
absence of DTT. Likewise, we demonstrated (Table 3) that a
partially purified MGDG synthase fraction lost half of its activity
when desalted on Biogel P-6DG columns equilibrated without DTT. The
addition of DTT led to the total recovery of initial activity of sample
loaded on top of the column (Table 3). DTT is therefore essential
to prevent loss of MGDG synthase activity at each step of the
purification procedure. Because of its low redox potential, DTT is a
reagent that maintains -SH (or -S
) groups from
cysteines in a reduced state and which is capable of reducing disulfide
bonds between 2 cysteines (Cleland, 1964). Moreover, Table 3shows that addition of up to 100 mM DTT still
protected MGDG synthase activity. It is therefore very unlikely that
disulfide bonds might exist in the enzyme ternary structure unless they
were deeply embedded within the protein structure.
), and in
the presence of 1 mM DTT (), at increasing
concentrations of NEM.
) blocking agent. Indeed, Fig. 3shows that MGDG synthase activity kept in a medium devoid
of DTT was gradually inactivated when NEM concentration was increased,
whether the enzyme was embedded in its native envelope membrane or
whether it was solubilized (Fig. 3). However, membrane-bound
MGDG synthase was far less sensitive to NEM than the solubilized
enzyme: Fig. 3, A and B, shows that 5
mM NEM were required to totally inactivate MGDG synthase in
envelope membranes, whereas 8 µM NEM was sufficient when
the membrane was solubilized (Fig. 3A). Addition of 1
mM DTT to solubilized envelope prevented inactivation of MGDG
synthase by NEM (Fig. 3A). These results show that (a) reduced cysteines are essential for MGDG synthase activity
and (b) the reduced cysteine residues are located in a
hydrophobic area of the enzyme. Cysteine residues are protected by the
envelope lipidic leaflets, while they are more exposed to NEM when MGDG
synthase was included in mixed micelles.
His
domains in their 1,2-diacylglycerol
binding site. It is therefore possible that cysteine residues are
linked to zinc within the 1,2-diacylglycerol binding site of MGDG
synthase. A protein kinase D has been recently characterized that
exhibits homology with the regulatory domain of protein kinase C and
binds 1,2-diacylglycerol (Valverde et al., 1994). Other
proteins that manipulate 1,2-diacylglycerol and also contain a
cysteine-rich motif include diacylglycerol kinase (Schaap et
al., 1990, Fujikawa et al., 1993). Since reduced
cysteines are often involved in metal chelation (Freeman, 1973; Vallee
and Auld, 1993), we undertook analyses of the metal ions that could be
essential for MGDG synthase activity.Effect of Zinc and Chelating Agents on MGDG Synthase
Activity
In order to study the effect of added chelating agents
and metal ions on MGDG synthase activity, the pH of purified MGDG
synthase fractions was first adjusted to 6.0 to prevent formation of
hydroxide precipitates. MGDG synthase is inhibited by zinc cation at
neutral or slightly alkaline pH (Heemskerk, 1986;
Maréchal et al., 1991). In contrast, the
enzyme was not affected by 1 mM ZnCl
when assayed
at pH 6.0 (Table 5). Among amino acid groups commonly involved in
the binding of metal (imidazole, carboxyl, amine and sulfhydryl),
imidazole group is the only one for which the pK value is comprised
between 6.0 and 7.8 (Freeman, 1973). MGDG synthase is therefore likely
to possess a histidine largely deprotonated at pH 7.8, which confers
sensitivity of the enzyme to metals. Since EDTA was sufficient to
prevent inhibition of MGDG synthase by Zn
or
Cu
(Maréchal et al.,
1991), the imidazole group should be exposed to the hydrophilic portion
of the enzyme. Interestingly, galactosyltransferases possess two
histidine residues in their UDP-Gal binding site (Yadav and Brew,
1991).
had no effect on MGDG synthase activity (Table 5), indicating that the soluble metal cation competes with
MGDG synthase for ortho-phenanthroline binding.
or Cu
at pH 7.8 (see above). The presence of two metal binding sites,
apparently antagonist, is not surprising and has been demonstrated in
other metalloenzymes. For instance, inter-
-trypsin inhibitor, a
zinc protein (Steinbuch, 1976), is inhibited by zinc (Salier et
al., 1980), and so is another zinc protein, aminoacylase I (Wang et al., 1992; Wu and Tsou, 1993).
h
,
occurred during the first 15 h and was followed by another inactivation
step with a similar second order constant, k"c = 1083 M
h
. Total
inactivation did not occur, since 10-20% of the initial activity
still remained after 33 h of incubation. These results indicate that
MGDG synthase is associated with metal(s) in a complex manner. First,
it is possible that more than one population of enzyme do exist, each
one differing in the strength of its association with the metal and
characterized by each event shown in Fig. 6. Second, it is more
likely that MGDG synthase contains at least two metal cations with
sequential removal, leading to the two successive inactivation steps
presented in Fig. 6. The inactivation kinetic observed with MGDG
synthase can be compared with that of other metalloenzymes containing
more than one metal cation/enzyme. For instance, alcohol dehydrogenase,
which contains two zinc atoms (Drum and Vallee, 1970), is never totally
inactivated by any chelating agent (Drum et al., 1969a).
Moreover, extraction of zinc from alcohol dehydrogenase proceeds
sequentially. A first Zn
cation is primarily
extracted by ortho-phenanthroline (Drum and Vallee, 1970);
this extraction is reversible upon the addition of zinc (Drum et
al., 1969b). A second Zn
cation is subsequently
extracted, and this extraction is irreversible (Drum et al.,
1969a). The same holds true for another metalloenzyme, phospholipase C,
incubated with ortho-phenanthroline (Little and
Otnäss, 1975).
) showed little change in activity over the observed
period. Inhibition of MGDG synthase activity by ortho-phenanthroline (
) was analyzed according to Dumas et al.(1989) as described under ``Experimental
Procedures,'' and did not exhibit any simple second rate order
kinetic. Bottom, logarithmic representation of the
activity. Two successive inactivation events seem to occur, a and c, with second order rates: k" a =
1175 M
h
and k"c = 1083 M
h
. The
theoretical curve represents a simple second order kinetic for enzyme
inhibition by a single inactivation event.
Attempt to Identify the Metal Cation(s) Associated with
Apo-MGDG Synthase
Direct identification of metal atoms
associated with MGDG synthase could not be achieved since (a)
we used only partially purified enzyme fraction and (b) only
very low amounts of the purified MGDG synthase can be obtained
(Maréchal et al., 1991) for reliable
determination of metal content. We therefore tried to restore MGDG
synthase activity after incubation with ortho-phenanthroline
by adding back metal cations. Purified MGDG synthase was first
incubated with ortho-phenanthroline and the inhibitor was then
removed by chromatography on Biogel P-6DG column. In the representative
experiment shown in Table 6, only 10% of the initial MGDG
synthase activity remained after this treatment. Desalted fractions
were further incubated for 2-3 h at 4 °C, with
CuCl
, MnSO
, MgCl
, FeSO
,
or CoCl
with no apparent restoration of the activity (data
not shown). Only incubation with ZnCl
led to a limited (but
highly reproducible) restoration of the activity. Data presented in Table 5show that a 24-h incubation with 10 µM ZnCl
and 1 mM DTT allowed restoration of the
activity up to 17% of the initial activity (this corresponds in fact to
a 67% stimulation of the remaining activity). In this experiment, a
maximum of 20% of the initial activity was obtained when 10 µM MgCl
was added to the incubation medium together with
10 µM ZnCl
and 1 mM DTT. However,
above 50 µM ZnCl
, no restoration of MGDG
synthase was observed (Table 5). Restoration of enzyme activity
after removal of zinc cation from the hydrophobic core of the
1,2-diacylglycerol binding site is extremely difficult. For instance,
Gschwendt et al.(1991) demonstrated that addition of
Zn
cation to apoprotein kinase C did not allow any
restoration of native protein kinase C activity, although
1,2-diacylglycerol domain from protein kinase Cs contains zinc cation
(Hubbard et al., 1991). It is possible that extraction of the
second metal cation by ortho-phenanthroline could be
irreversible, as shown for phospholipase C (Little and
Otnäss, 1975) and alcohol dehydrogenase (Drum et al., 1969a), thus making full restoration of the enzyme
activity extremely hazardous.
-galactose
from a nucleotidic donor (UDP-Gal) to the sn-3 carbon from the
glycerol backbone of 1,2-sn-diacylglycerol. Catalysis involves
the galactose moiety of UDP-Gal and the sn-3-hydroxyl group
from 1,2-diacylglycerol. In this article, we demonstrate that UDP-Gal
binds to MGDG synthase at the level of its nucleotidic side, on a site
topologically distinct from that of 1,2-dioleoylglycerol binding. In
previous articles, Maréchal et al. (1994a, 1994b) demonstrated that MGDG synthase affinity for
1,2-diacylglycerol was dependent upon acyl chain length (16 or 18
carbons), their position on the glycerol backbone (sn-1 or sn-2), and their level of unsaturation. Therefore,
1,2-diacylglycerol binding on MGDG synthase involves its acyl part.
Together, these data demonstrate that MGDG synthase active site
contains three distinct parts: two independent substrate-binding sites
(for UDP-Gal and 1,2-diacylglycerol) and the catalytic site itself
(where galactose transfer occurs). Two possibilities for the relative
topology of the substrate-binding sites are presented in Fig. 7;
either binding sites are completely separated and catalysis occurs
after a deep conformational change (Fig. 7A), or
binding sites partly overlap (Fig. 7B). Such systems
would function with a random, sequential bireactant mechanism.
. Further investigations are now in progress in
order to understand the molecular basis for these puzzling similarities
between MGDG synthase and eukaryotic 1,2-diacylglycerol kinases.
Finally, since prokaryotic 1,2-diacylglycerol kinases are not rich in
cysteine and do not contain any metal (Loomis et al., 1985), the study presented in this paper raises the question
of a possible eukaryotic origin of MGDG synthase. In fact, chloroplast
envelope MGDG synthase has a prokaryotic counterpart, the
monoglucosyldiacylglycerol synthase from cyanobacteria. In
cyanobacteria membranes, galactolipids (mostly MGDG) are the major
polar lipid constituents, and their biosynthetic pathway (for a review,
see Murata and Nishida(1987)) presents only limited differences with
that described in the chloroplast envelope (for a review, see Joyard
and Douce(1987)). One of them is that MGDG is formed by a
monoglucosyldiacylglycerol synthase, which catalyzes the transfer of a
glucose molecule from UDP-glucose to 1,2-diacylglycerol to form MGluDG
(Murata and Sato, 1983), followed by an epimerization of the glucose
moiety to galactose. Although, the difference concerns the UDP-sugar
and not the 1,2-diacylglycerol binding site, it would be most
interesting to compare the properties of MGluDG synthase from
cyanobacteria with those of the chloroplast envelope MGDG synthase. In
addition, chloroplast envelope membranes contains several other enzymes
that manipulate 1,2-diacylglycerol, namely the
galactolipid:galactolipid galactosyltransferase, the phosphatidate
phosphatase, and the sulfolipid synthase (for a review, see Joyard and
Douce(1987)). An intriguing question is to understand whether a common
structure for 1,2-diacylglycerol-binding sites from all these proteins
do exist.
)
We thank Dr. J. Covès for
performing the experiment presented in Fig. 3.
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
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