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Volume 270,
Number 12,
Issue of March 24, 1995 pp. 6864-6871
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Metal-responsive
Elements of the Rainbow Trout Metallothionein-B Gene Function for Basal
and Metal-induced Activity (*)
(Received for publication, November 14,
1994; and in revised form, January 17, 1995)
Susan L.-A.
Samson (§),
,
Lashitew
Gedamu (¶)
From the Department of Biological Sciences, the University of
Calgary, Calgary, Alberta T2N 1N4, Canada
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
In this study, the contributions of the two metal-responsive
elements (MREs) of the rainbow trout (Salmo gairdnerii)
metallothionein (tMT)-B gene promoter (-137 to +5) were
analyzed. The effect of MRE mutations on the basal and zinc-induced
activities of tMT-B promoter-reporter gene fusions were determined by
transfection of a rainbow trout hepatoma (RTH-149) cell line. Together,
MREa and MREb cooperate to elicit a significant response to zinc but
exhibit differential basal and metal-induced activity. The MREa
sequence (-62 to -51) is important for basal promoter
activity and can function independently, whereas the more distal MREb
(-89 to -100) mainly contributes to metal induction through
cooperative interactions with MREa. The degree of basal character of
the MREs is partially determined by nucleotide differences at the
flexible position N of the MRE consensus TGC(G/A)CNC. In mouse L and
HepG2 cells, MREa activity is conserved, but the contributions of the
MREb region differ, including reduced cooperativity with MREa. There
are also differences in the apparent molecular masses of the rainbow
trout and mammalian nuclear factors that bind to the tMT-B promoter and
MREa sequence.
INTRODUCTION
Metallothioneins (MTs) ( )are low molecular mass
(6-7 kDa), conserved proteins that coordinate metals, such as
cadmium, copper, and zinc, by thiol bonds with their numerous cysteine
residues(1) . Although the precise function(s) of MTs has not
been defined, MTs have been proposed to have a variety of cellular
roles including metal ion homeostasis, detoxification and
cytoprotection during the acute phase
response(1, 2, 3, 4) . Consistent
with a diverse array of cellular functions, MTs are transcriptionally
induced by numerous agents including mitogens(5, 6) ,
cytokines(3, 4, 7) , and
hormones(8) ; in many cases, the cis-acting elements
that mediate the responses to inducers have been identified. However,
the presence of such elements varies among MT genes in one family and
among different species. For example, of the multiple members of the
human MT gene family, only the hMT-IIA gene promoter has been shown to
have a glucocorticoid-responsive element, and binding sites for AP1,
AP2, and AP4, which mediate responses to activators of protein kinase C
and protein kinase A pathways(9) . However, metals are the
common inducer of MT genes, and all MT promoters from Drosophila to humans contain multiple copies of a semiconserved sequence that
is responsible for induction by metals, called a metal-responsive
element (MRE)(9) . MREs are 12-15- base pair sequences
consisting of a highly conserved heptanucleotide core, TGC(A/G)CNC, and
less conserved flanking nucleotides(9) . To determine the cis-acting sequence requirement for metal induction of
transcription in mammalian cells, previous studies have employed a
variety of synthetic MREs fused to a minimal
promoter(10, 11) . However, we are interested in MRE
sequence contributions to transcription in the context of native
promoter sequences, orientation and distance from the TATA box. The
rainbow trout (Salmo gairdnerii) (t)MT-B gene provides a
convenient tool for this purpose. The tMT-B promoter lacks the numerous
basal and inducible cis-acting elements that interpose and
surround the MREs of mammalian MT promoters(9) . Further, the
tMT-B gene has only two MRE sequences within 250 base pairs of
5`-flanking sequence, whereas the analogous regions of mammalian MT
promoters contain four to six MREs (9, 12) . Because
of this apparent simplicity, we have employed site-directed mutagenesis
of the tMT-B promoter to determine the contribution of each MRE to
transcription activity. By transient transfection of rainbow trout
hepatoma (RTH-149) cells, we demonstrate here that the two MREs of the
tMT-B proximal 5`-flanking sequence cooperate for a high level of metal
induction. However, each MRE contributes differentially to basal and
metal-induced promoter activity, and this variance is partly due to
sequence differences within the MRE consensus. In mammalian cell lines,
the differential contributions of each MRE for basal and metal-induced
transcription are observed, but differences in the function of the
tMT-B promoter suggest that additional or functionally distinct factors
interact with the promoter in mammalian cells. With this in mind, the
rainbow trout and mammalian nuclear factors that bind to the tMT-B
promoter sequences vary in apparent molecular mass.
MATERIALS AND METHODS
Trout MT-B Promoter-Reporter Gene ConstructsThe
construction of the tMT-B promoter deletions at -49, -84,
and -137 from transcription initiation was described
previously(12) . Point mutations were generated for the XmnI-HindIII (-137) tMT-B promoter fragment
subcloned in M13mp18 using oligonucleotide-directed mutagenesis as in
Imbert et al.(13) and(14) . Double mutants
were obtained by stepwise mutagenesis at each site. PCR mutagenesis was
used to substitute MREa and MREb sequences for the -137/dMREa
(d= deletion) and -137/dMREb constructs. For
-137/dMREa, the PCR employed the SP6 primer, which anneals to
vector sequences at the 5`-end of the -137 fragment, and a
3`-primer, which anneals to nucleotides upstream to and including MREa
with the sequence 5`-TCTAGAGAGCTCAGTCTCGCGTTCAGACG-3`. This primer
replaced MREa with a SacI restriction site (underlined) for
ligation to the BanI-HindIII tMT-B TATA
box(-49) fragment. After these manipulations, the MREa region was
mutated at eight sites. For -137/dMREb, two complimentary primers
were synthesized for overlapping PCR mutagenesis, which mutated MREb at
six sites. The tMT-B promoter organization and sequence of the various
tMT-B -137 fragment MRE point mutants and substitutions are
compiled in Fig. 1for convenience.
Figure 1:
Rainbow
trout MT-B promoter deletions and MRE mutants. A schematic diagram of
the tMT-B promoter is shown with the sequences of the wild type and
mutated MRE sequences. Deletion and site-directed mutagenesis of the
tMT-B promoter was performed as described in (13) and under
``Materials and Methods.'' The wild type and MRE mutant
promoter fragments were fused to the reporter genes CAT and LUC in the
vectors pMEV1R and pMEV35R, respectively.
All tMT-B wild type and
mutant promoter fragments were subcloned into mammalian expression
vectors pMEV1R and pMEV35R, which were constructed in our
laboratory(15) . The vector pMEV1R contains a chloramphenicol
acetyltransferase (CAT) reporter gene which was replaced with a firefly
luciferase gene (LUC) to construct pMEV35R (15, 16, 17) . Plasmid DNA for transfection
was purified using the Plasmid Maxi Purification Kit (Qiagen) according
to the manufacturer's instructions.
Cell Culture and TransfectionRTH-149
cells(18) , mouse L cells(13) , and human HepG2 cells (19) were grown as anchorage-dependent cultures in
Eagle's minimal essential medium (Life Technologies, Inc.)
supplemented with 0.16% sodium bicarbonate, 5% fetal bovine serum, and
2 mML-glutamine. RTH-149 cells were incubated at 18
°C with 5% CO ; mouse L cells and HepG2 cells were grown
at 37 °C with 5% CO .The calcium phosphate
precipitation method of Gorman et al.(16) was used
for transfection of cells, and slight modifications to the procedure
have been described previously in
detail(12, 13, 15) . Cells were seeded at a
density of 1 10 cells/cm and treated
with 0.13 µg/cm test plasmid and an equal mass of the
carrier plasmid pGEM or pUC13. After a 24-h recovery from glycerol
shock, the transfected cells were treated with metal for 48 h for
RTH-149 cells or 24 h for mouse L and HepG2
cells(12, 13, 20) . Zinc was chosen for metal
induction since it is the most efficient inducer of the endogenous and
transfected tMT-B gene in RTH-149 cells, eliciting the fastest,
highest, and longest lived transcription response compared with cadmium
and copper(12, 21) . At 100 µM ZnCl , there are minimal cytotoxic effects and growth
inhibition without compromising the level of transcription
activation(21) .
Reporter Gene AssaysCells were lysed by
freeze-thawing in cell lysis buffer (Promega Biotech.), and cell
protein was quantified using Coomassie Blue Assay Reagent (Pierce) with
bovine serum albumin as a standard. For measurement of CAT activity,
100 µg of cell protein was assayed as described by Gorman et
al.(16) , and nonacetylated and acetylated forms of
[ C]chloramphenicol (DuPont NEN) were resolved by
thin layer chromatography and visualized by
autoradiography(22) . The activity of each tMT-B-CAT construct
was measured as percent acetylation as determined by densitometer
scanning (LKB Ultrascan XL). LUC assays were performed according to the
protocol of de Wet et al.(17) . The LUC activity for
each transfection plate was an average from three measurements using a
luminometer (Analytical Luminescence Laboratory).The numerous
constructs used in this study were assayed from two to six times with
each reporter gene, and the results were found to be consistent. Basal
and zinc-induced values of reporter gene activity were normalized by
considering that the metal-induced activity of the -137 promoter
fragment had a value of 100. After normalization, basal and
metal-induced values for different trials of the same construct were
averaged and are presented as units of relative activity. The standard
deviations of trials for the different constructs under basal and
metal-induced conditions were generally 5-15% of the average. The LUC assay system allowed a larger range from minimum to maximum
detection limits. Because of this increased sensitivity, quantitative
values are presented for LUC for comparison with the qualitative
results of a representative trial using CAT. However, the effects of
mutations on metal fold induction using CAT assays are stated under
``Results'' from the average of three transfections.
Southwestern BlottingThe trout promoter fragment
from -137 to -30 was obtained by PCR from(-137)-CAT
(pMEV1R) and (-137/-91T/-60A)-CAT using the SP6
primer at the 5`-end of the vector multiple cloning site and a
3`-primer (5`-TAGCGTCAGGGACAGACGGG-3`) designed to remove sequences 3`
to and including the TATA box region. Complimentary oligonucleotides
corresponding to the tMREa sequence and the tMREa/-60A point
mutant were synthesized (Pharmacia LKB Gene Assembler Plus) with the
upper strand sequences of the oligonucleotides as follows.

The annealed double oligonucleotides and the tMT-B promoter PCR
products were purified by elution from 10% nondenaturing polyacrylamide
gel electrophoresis and end labeled to a specific activity of 10 cpm/µg as per accepted protocols(23) . Trout liver
extracts were prepared by the method of Gorski et
al.(24) . Nuclear extracts from mouse L cells and HepG2
cells were prepared as described previously(25) . Nuclear
proteins (50 µg) were fractionated using 6% sodium dodecyl
sulfate-polyacrylamide gel electrophoresis and electroblotted onto
nitrocellulose(22) . Blots were soaked in binding buffer
containing 10 mM Hepes, pH 7.9, 50 mM NaCl, 1 mM MgCl , 5 mM dithiothreitol, and 10% glycerol (26) along with 6 M guanidinium isothiocyanate for 10
min at room temperature and then transferred to 4 °C for all
further steps. The denaturant was diluted 1:1 in binding buffer
containing 100 µM ZnCl for 10 min and then
diluted four more times in a similar fashion. After the final dilution
step the blots were washed in binding buffer with zinc and then blocked
16 h in binding buffer with zinc and 5% nonfat milk. End-labeled probe
was added to a concentration of 10 cpm/ml binding buffer
with zinc and 0.25% nonfat milk for 7 h at 4 °C. The blots were
washed twice in binding buffer with zinc for 10 min, air dried, and
then exposed to x-ray film.
RESULTS
Promoter Fragments Containing MREa and MREb Both
Contribute to Metal Induction of the tMT-B PromoterThe proximal
250 base pairs of tMT-B promoter contains only two MRE sequences, MREa
(-62 to -51) in forward orientation and MREb (-89 to
-100) in reverse orientation (12; Fig. 1). Using
transfection of RTH-149 cells, the -49 fragment, containing the
TATA box, was not metal-inducible, whereas the -137 fragment,
which includes both MREs, displayed 4.0-fold induction measured using a
CAT reporter gene (Fig. 2, bottom panel). Deletion from
-137 to -84 removed the more distal MREb sequence and
allowed only 1.7-fold metal induction (Fig. 2). This deletion
also decreased the basal level to that of the TATA box alone
(-49) and metal-induced activity to 20% of the -137
fragment (Fig. 2).
Figure 2:
CAT and LUC activity of tMT-B promoter
deletions. RTH-149 cells were transfected and treated with metals as
described under ``Materials and Methods.'' A representative
CAT assay from untreated and metal treated cells is aligned with the
relative LUC activity measured for each construct. Metal fold induction
values are stated above each metal-induced LUC activity
bar.
We chose to confirm the activities of the
tMT-B deletions with a LUC reporter gene, since the 4.0-fold zinc
induction was considerably lower than has been observed for the
endogenous tMT-B gene in RTH-149 cells (27) . Using LUC, the
basal levels of expression for -84 and -137 fragments were
comparable, whereas metal-induced levels were increased significantly
for -137 (Fig. 2, top panel). As a result,
-84 displayed 3.5-fold metal induction, whereas -137
generated a 12.5-fold metal response. The greater metal inducibility
observed using LUC is because this assay system displays a greater
range from minimum to maximum detection limits compared with CAT. As a
result of lower background expression from pMEV35R (LUC), measurement
of basal activity is more easily determined. For example, the TATA box
alone(-49) displays only 1% of metal-induced -137 activity,
whereas this is an average of 15% using CAT. This decrease in basal
expression values results in an increase in fold induction which more
closely approaches that of the endogenous gene. Results of both CAT
and LUC assays suggested that both MREa and MREb are active for metal
regulation since zinc inducibility increased with the addition of each
MRE-containing promoter fragment to the TATA box. However, the fragment
containing both MREs(-137) had metal-induced levels much greater
than if MREb contributed to induction equivalent to MREa
alone(-84). This suggested either that MREb makes larger
contributions to metal induction than MREa, or MREa and MREb interact
in a cooperative manner.
The tMT-B Promoter MREa and MREb Contribute
Differentially to Basal and Metal-induced ActivityTo
investigate possible cooperative interactions of MREa and MREb as well
as their independent contributions to regulation of the tMT-B promoter,
single point mutations were generated in both MREs in an attempt to
inactivate their metal-inducible activity. The -137/-60A
construct contains a substitution of the normal T nucleotide with A at
the -60 position (Fig. 1). This mutates the first
nucleotide of the conserved core of MREa, while the analogous mutation
of MREb is -137/-91T (T because of the reverse orientation
of MREb; Fig. 1). A substitution of T to A at this position of
the conserved MRE core previously has been shown to abolish its metal
regulatory function in the context of a synthetic
promoter(11) . Finally, both MREs are mutated in the
-137/-60A/-91T construct (Fig. 1).The
results of both CAT and LUC assays of promoter activity in RTH-149
cells are combined in Fig. 3. Using LUC, the inactivating
mutation of MREa (-60A) actually resulted in a substantial
increase in metal induction from 12.5-fold for the wild type promoter
to 16.7-fold. This was paralleled by the results of CAT assays which
also revealed an increase in induction from 4.0 to 6.6-fold because of
this mutation. Although this mutation was created to reduce the metal
responsiveness of the promoter, the actual consequence was an extreme
decrease in basal activity to the level of the TATA box(-49),
increasing the difference between basal and induced activity. From this
observation, MREa could be considered the dominant basal element in the
-137 promoter fragment which concurs with the lack of other
recognizable elements in the promoter(12) .
Figure 3:
Activity of tMT-B promoter MRE mutants. A
representative CAT assay is combined with the relative LUC activity of
the wild type tMT-B promoter(-137) and MRE mutants in RTH-149
cells averaged from three trials. The metal fold induction from the
ratio of zinc-induced activity to basal activity is stated above each
zinc-induced LUC activity bar.
The analogous
mutation of MREb (-91T) was much less devastating to overall
promoter activity, decreasing the basal level by only 15%, but reducing
induction to 9.5-fold using LUC. Similarly, the fold induction of the
analogous CAT construct also decreased compared with the native
promoter. This confirms that the MREb sequence also contributes to the
metal responsiveness of the tMT-B promoter. The double mutant,
-137/-60A/-91T, displayed the same low basal activity
expected from the result of the single MREa (-60A) mutation. In
addition, zinc-induced levels measured by LUC were reduced to only 4%
of the wild type promoter. However, in spite of mutation of both MREs,
this construct still exhibited 3.1-fold induction with LUC and 1.9-fold
induction with CAT. From this result, the single point mutations
intended to inactivate MRE function still allow metal induction in the
context of the tMT-B promoter. This contrasts previous studies with
synthetic promoters where mutation at this first MRE core nucleotide
completely inactivated MRE function(10, 11) . Since
the point mutated MREs were still partially active, the independent and
cooperative contributions of the MREs to tMT-B promoter function were
not well defined. Additional mutants were constructed, -137/dMREa
and -137/dMREb, where each MRE sequence was substituted at
numerous nucleotides so that it was unrecognizable as an MRE while
maintaining the position of the second MRE and other possibly important
sequences (Fig. 1). Substitution of MREa (-137/dMREa)
was devastating to the basal activity of the promoter, expected from
the result of -137/-60A mutant promoter (Fig. 3).
However, zinc-induced levels also decreased to nearly undetectable
levels. Without MREa, 2.1-fold induction of promoter activity was
observed with LUC, whereas no inducibility was observed with CAT
assays. The substitution of the MREb sequence was not as devastating
to promoter activity compared with substitution of MREa since
-137/dMREb-LUC still displayed activity well above the TATA box
alone (-49) and an induction of 3.7-fold. For CAT, basal level
was the same as the native -137 promoter fragment, but
metal-induced activity was reduced, resulting in a metal induction of
1.3-fold. For both assay systems, the metal fold induction of
-137/dMREb is comparable to that of -84 which also contains
only MREa. The use of these substitutions of MREa and MREb were more
revealing than the single point mutants in regard to the role of each
MRE in tMT-B promoter activity. MREa appears to be able to function in
an independent manner since substitution of MREb still allows basal
activity above the TATA box alone and elicits a significant response to
metals. However, substitution of MREa devastates basal promoter
activity and allows only nominal metal induction, indicating that MREb
cannot function efficiently independent of MREa. Both MREs must
cooperate for a response to metals since the sum of the fold inductions
generated by each MRE when the other was substituted does not equal
that of the native promoter.
Differential MRE Function Is Partially Determined by
SequencePrevious studies with synthetic MRE sequences have
shown that cooperativity between MREs is required for metal induction,
similar to our observations with the tMT-B MREb. The mouse MT-I gene
MREd is the only sequence that has been shown to have independent
activity assayed by transfection, with basal activity partially
justified by its homology to an SP1 transcription factor binding site (10, 11, 28) . In this sense, the observed
basal activity and independent metal inducibility of the tMT-B MREa are
novel.We considered that the observed differential function of MREa
and MREb for basal and metal-induced tMT-B activity could be due to
position relative to the TATA box, orientation, or subtle sequence
differences between the MREs. MREa and MREb differ by only one
nucleotide (underlined), TTTGCACNCGG, which is -55A in
MREa and -96G (C in forward orientation) in MREb (Fig. 1).
This position is the least conserved nucleotide of the MRE consensus
since all 4 bases have been found to occupy this position in natural
MREs (9) . To determine if this nucleotide was responsible for
differential basal and metal-induced MRE activity, reciprocal point
mutants were made to alter MREa to the MREb core sequence,
-137/-55C, and MREb to the MREa core sequence,
-137/-96T (Fig. 1). If this nucleotide difference
was responsible for the observed basal activity of MREa, then
-55C should reduce the basal activity of MREa, and therefore the
promoter, while -96T should increase the basal contributions of
MREb. The effects of these mutations on tMT-B promoter activity are
shown in Fig. 4. For both CAT and LUC, mutation of MREa to
TGCACCC (-137/-55C) caused a significant decrease in basal
promoter activity but had little effect on metal-induced activity. As a
result, the induction was increased 12.5-17.5-fold for LUC, and
4.0-11.2-fold for CAT. The opposite mutation of MREb to the MREa
sequence (-137/-96T) increased basal activity above that of
the native promoter. For LUC, the metal-induced levels were also
increased nearly 1.5-fold, whereas for the CAT assays, metal-induced
levels were not affected significantly. As a result of the increased
basal level, metal inducibility was decreased compared with the native
promoter, from 12.5- to 10.2-fold for LUC and from 4.0- to 3.3-fold for
CAT.
Figure 4:
Effect of MRE core sequence on basal
activity. See Fig. 3legend.
The effect of MRE core sequence on basal promoter activity was
investigated further using the MRE reverse mutations, -55C and
-96T, in concert with the inactivating point mutants of the
opposite MRE. The devastating effect of the MREa mutation (-60A)
on basal activity was partially rescued by altering MREb to an MREa
sequence for the construct, -137/-96T/-60A (compare Fig. 3and Fig. 4). This was a 2.6-fold increase in basal
expression for LUC compared with the -137/-60A construct
and a smaller but visible increase for CAT. Conversely, the basal
activity of -137/-55C/-91T was decreased compared
with -137/-91T ( Fig. 3and Fig. 4). All of
the above constructs served to show that the N position of the MRE core
sequence is an important determinant of MRE contributions to basal
activity. When both MREs have the sequence of MREa, the basal activity
of the promoter is increased; the opposite is true when both MREs have
the MREb sequence. This is consistent with the results of the MRE point
mutants which suggest that MREa is an important contributor to basal
level expression. However, the mutation of MREb to an MREa sequence
could not confer independent activity on MREb, since the -96T
mutation did not completely rescue the basal activity of the -60A
mutant. Because of this observation, it was important to determine if
the orientation and position of the MREs were also important. The
double mutant, -137/-96T/-55C, is the reciprocal of
the tMT-B promoter with the MREa sequence in MREb position and vice
versa. This construct had the highest general activity of all of the
mutant promoters. For LUC, both basal and metal-induced levels nearly
doubled, but the resulting 12.3-fold metal induction was similar to
that of the native promoter (12.5-fold). The homologous CAT construct
also had metal induction (3.9-fold) comparable to that of the wild type
promoter (4.0-fold), although the increase in general promoter activity
was not as large as observed with LUC assays. Since fold induction is
conserved with this reversal of MRE core sequence, the cooperative
interactions between the two MRE core sequences for metal inducibility
are not affected. However, general promoter activity is increased
compared with the native promoter so that position, orientation, and/or
flanking sequences are also important for basal contributions to the
promoter.
MREa Is a Strong Basal Element in Mammalian Cells, but
the Metal Responsiveness of the tMT-B Promoter Is ReducedFrom
past studies using mammalian MT genes and cell lines, MREs have been
discussed only as inducible elements(10, 11) , but our
observations presented in this study suggest that MREs can have a dual
role as basal and metal-inducible elements. However, we have considered
that in trout cells, a homologous system, the tMT-B MREs function for
basal expression in addition to metal induction because no other basal
elements are present. Mammalian MT genes contain many other cis-acting elements, which could assume the function of basal
MT expression (9) so that MRE-binding transcription factors in
mammals could have evolved to function only for metal induction. Previously, it has been observed that tMT-B -84-CAT is active
in mouse L cells(13) . To determine if the differential basal
and metal-responsive activities of MREa and MREb are conserved in
mammals, we have tested the most important tMT-B promoter-LUC
constructs in mouse L cells. As with RTH-149 cells, tMREa also acts
independently in mouse L cells, with -84-LUC eliciting a 3.7-fold
induction with zinc (Fig. 5A). However, adding
sequences from -84 to -137 lowers general promoter
activity. Further, the resultant induction is only 4.6-fold for
-137 (Fig. 5A), which is much lower than the
12.5-fold induction observed in trout cells. The less significant metal
induction in mouse L cells could be caused by the high basal activity
of the tMT-B promoter. In RTH-149 cells, -84 increased basal
activity 6.5-fold over the TATA box(-49) alone; this was observed
as an 113-fold increase in mouse L cells.
Figure 5:
Basal and metal-induced activity of tMT-B
promoter in mammalian cells. Selected tMT-B promoter-LUC fusions were
transfected into mouse L cells (panel A) and human HepG2 cells (panel B) and treated as stated in under ``Materials and
Methods.'' The relative LUC activity is the mean of two separate
trials.
To determine if the high
basal level involved MREa, the inactivating mutation -60A was
tested. This mutation decreased basal activity more than metal-induced
levels, as in trout cells, increasing induction from 4.6- to 18.1-fold.
The analogous MREb mutant, -137/-91T, actually increased
basal activity but did decrease metal-induced expression, reducing
induction to 3.4-fold, similar to the 3.7-fold induction of MREa
alone(-84), confirming that MREb does make some contributions to
metal induction. Finally, the double mutant 137/-60A/-91T
displayed the same low basal level as the -60A mutant and was
still 3.0-fold induced by zinc so that the single point mutations of
the MREs do not completely inactivate metal inducibility as observed in
trout cells. The tMT-B promoter was still able to respond 3.9-fold
to metals with substitution of the MREa sequence (-137/dMREa),
although the basal level was devastated. In this sense, MREb was able
to act in an independent manner for metal induction. When MREb was
substituted, the promoter retained the basal level of the promoter,
through MREa, but inducibility was reduced to 2.4-fold. Although the
basal contributions of MREa were observed in mouse L cells, as in
RTH-149 cells, there were important differences in expression of tMT-B
promoter fragments. The addition of promoter regions from -84 to
-137 appeared to inhibit basal activity, and the metal fold
induction of the promoter was reduced. Also, the mutation of MREb
(-91T) noticeably increased basal activity. These results were
unanticipated and merited further testing of these constructs in
another mammalian cell line. Human HepG2 cells were chosen because
this cell line has been useful for understanding human MT gene
expression(19, 20, 29, 30) . As in
mouse L cells, the tMT-B promoter fragments -84 and -137
displayed high basal activity and low metal inducibility, with both
fragments allowing only a 2.5-fold response to zinc, so the addition of
MREb did not increase inducibility (Fig. 5B). Again, a
decrease in general promoter activity was observed with the addition of
sequences from -84 to -137. Compared with mouse L cells,
this was much more obvious with promoter activity reduced almost in
half. As observed for trout and mouse cell lines, the
-137/-60A mutant exhibited drastically reduced basal
activity, which increased induction from 2.5- to 7.1-fold (Fig. 5B). However, mutation of MREb,
-137/-91T, also increased induction to 3.8-fold by
increasing metal-induced expression without affecting basal activity (Fig. 5B). Finally, the double MRE mutant
-137/-91T/-60A still had significant induction
(1.9-fold) compared with the native promoter (2.5-fold) (Fig. 5B). The behavior of the tMT-B promoter
constructs in mammalian cell lines indicates that the tMT-B MREa also
contributes to basal activity in mammals. However, the cooperative
interactions of MREa and MREb are reduced so that the metal fold
induction of the promoter is substantially less than that observed in
trout cells. In addition, the more distal promoter fragment from
-84 to -137 appears to repress promoter activity, which may
be responsible for the lesser contributions by MREb in this region.
Since the point mutation of MREb (-91T) does increase basal
activity of the promoter in mouse L cells and metal-induced levels in
HepG2 cells, it seems unlikely that this repression could only be
caused by context effects from the nearby vector sequences.
Proteins Interact with the tMT-B Promoter Sequences in
Trout Liver, Mouse L Cell, and HepG2 Cell Nuclear ExtractsWe
have employed the technique of Southwestern blotting to identify the
trout, mouse, and human nuclear proteins that interact with the tMT-B
promoter sequences by their apparent molecular mass. As a source of
trout proteins we have used trout liver nuclear extracts because we
have been unable to detect MRE binding activity in extracts prepared
from RTH-149 nuclei using this assay. A tMT-B promoter fragment from
-30 to -137, containing both MREs but not the TATA box, was
used as a probe to identify the proteins that bind to the promoter (Fig. 6A). Although the apparent molecular masses vary
slightly among different assays, in trout liver nuclear extracts, a
protein of approximately 160 kDa is detected, whereas in mouse L cells
and HepG2 cells, 105- and 125-kDa proteins are detected, respectively (Fig. 6A). When the double MRE point mutant promoter
fragment (-137/-91T/-60A) is employed, promoter
binding to the proteins in all three types of extracts is drastically
reduced (although visible in extreme overexposures), suggesting that
the interaction of the promoter with these proteins is MRE specific (Fig. 6A). If the zinc chelator o-phenanthroline is included in the renaturation and binding
buffers instead of zinc, the binding of the probe is abolished,
indicating that the protein-DNA interactions observed are
zinc-dependent (Fig. 6A). Whether this zinc dependence
is due to a zinc-requiring DNA binding domain or a metal-responsive
domain is not clear.
Figure 6:
Southwestern blotting analysis. Nuclear
extracts from rainbow trout liver (t), mouse L cells (m), and HepG2 cells (h) were separated by sodium
dodecyl sulfate-polyacrylamide gel electrophoresis and electroblotted
to nitrocellulose; blots were treated as described under
``Materials and Methods.'' Panel A, the wild type (W.T.) tMT-B promoter region (-137 to -30) was
used as a probe and identified single proteins in each of the nuclear
extracts. The double MRE mutant tMT-B promoter fragment (-91T/-60A) was incapable of binding to the same
proteins, and the inclusion of o-phenanthroline instead of
zinc during binding abolished binding of the wild type probe (W.T./-Zn). Panel B, a tMREa oligonucleotide
probe (W.T.) identified the same proteins as the tMT-B
promoter while binding was abolished for the point mutated tMREa (-60A) or for the wild type tMREa in the presence of o-phenanthroline and absence of zinc (W.T./-Zn).
To confirm that the MRE sequences were
responsible for the interaction of the promoter with the nuclear
proteins in each extract, a double-stranded tMREa oligonucleotide was
used as probe (Fig. 6B). In each extract, tMREa
identified the same proteins as the whole tMT-B promoter fragment. The
tMREa -60A point mutant did not bind to the proteins, and, as
with the whole promoter, the absence of zinc because of chelation by o-phenanthroline abolished binding (Fig. 6B). Although this method cannot identify proteins that bind to the tMT-B
promoter as a heterogeneous complex, it does indicate that the only
independent protein-tMT-B promoter interactions are MRE-specific and
zinc-dependent. It also does not identify any MRE-independent mammalian
proteins that might be responsible for the decreased function of the
tMT-B promoter MREb region. It is interesting that the proteins bound
by the tMT-B promoter and MREa probe in trout, mouse, and human
extracts display appreciable differences in size even though the MRE
consensus sequence is highly conserved from trout to mammals. It is
possible that the DNA binding domain is highly conserved, but other
functional domains are divergent, which could be responsible for the
differences in tMT-B promoter activity in RTH-149 cells compared with
mouse L and HepG2 cells.
DISCUSSION
Using transfection analysis, we have determined that the two
MRE sequences present in the tMT-B promoter cooperate for a significant
response to zinc in a rainbow trout hepatoma cell line. We also have
noted that tMREa is zinc-responsive without cooperative interactions
with a second MRE. This is an unusual characteristic, which has been
observed only with the mouse MT-I MREd sequence(11) . From
additional results not presented here, independence is not conferred on
tMREb if mutated to the tMREa sequence (-137/-96T/dMREa). ( )Since distance from the TATA box has been shown to affect
MRE function in synthetic promoters(10) , the independent
activity of tMREa may be a consequence of close proximity to the TATA
box, rather than sequence. We previously have shown that basal MT
levels are significant in rainbow trout tissues and primary cell
culture(27, 31) . From our results, there are no
additional basal elements other than MREa in the proximal tMT-B
5`-flanking sequence. In past discussions, MREs have been considered
only as inducible elements because mammalian MT promoters contain
numerous other potential basal elements (9, 28, 32, 33, 34) and
MREs generally are not protected in vivo prior to metal
induction(28, 32) . Nevertheless, tMREa is also a
basal element in mammalian cell lines, so the basal activity of
MRE-binding factors is conserved from trout to mammals. We detect only
one protein in each of the trout and mammalian nuclear extracts which
binds tMREa, but multiple MRE specific proteins previously have been
detected within one cell line or species which could have distinct
functions for basal and metal-induced MT
expression(13, 26, 35, 36, 37, 38, 39, 40, 41) .
However, the cloned mouse MRE-binding factor, MTF-1, is required for
both basal and metal-induced MT gene expression, supporting a role for
MREs in basal MT transcription(26, 42) . The
zinc-dependent mouse and human proteins that we detect using the tMREa
sequence are similar in apparent molecular mass to mouse and human MTF
homologues(26, 41) , which are zinc finger proteins,
so it is possible that these are the factors responsible for tMREa
basal activity in mammalian cell lines. In fact, the mouse MTF-1 cDNA
was cloned from an expression library by affinity to an MRE with the
same core sequence as tMREa(26) . The basal properties of
tMREa, in contrast to tMREb, are partially due to a nucleotide
difference of A instead of C at the variable position of the core
sequence, TGC(G/A)CNC. Searle et al.(10) also have
observed a substantial increase in basal activity of a synthetic MRE
dimer when A is substituted for C at this position. An A rather than G
nucleotide at the fourth position of the TGC(G/A)CNC core, as in tMREa,
also raises basal activity of a synthetic MRE sequence (10) as
well as increasing binding of a zinc-dependent factor from rat liver
nuclear extracts(36) . Therefore, the functional effects of an
A at these two variable positions of the MRE core may be a reflection
of increased affinity of MRE-binding factor(s), and the tMT-B MREa
could be an ideal core sequence for factor binding. If only a low
concentration of the factor is functional in the cell, binding would be
limited to high affinity MREs, such as the tMREa sequence, for basal
activity. In the presence of metal, higher concentrations of
MRE-binding factor could be available to bind lower affinity sites
through cooperative interactions with the constitutively bound MRE(s),
eliciting a metal response that is significantly higher than basal
expression. There is sufficient variability among MRE sequences in one
MT promoter, both within the core as well as flanking sequences, to
allow two levels of MRE-dependent transcription(9) . Although
the tMREa sequence is common in trout MT promoters, ( )of the
mammalian MT-I isoform genes we have examined, only mouse MREe, human
MT-IF MREc, and rat MREf have this core
sequence(10, 15, 32) . However, the activity
of the proximal basal level enhancer of the human (h)MT-IIA is
abolished without a TGCACAC sequence in opposite orientation at its
3`-boundary, suggesting that this MRE sequence is required for hMT-IIA
basal activity(33) . This same tMREa core sequence is also
found in the distal basal level enhancer(33) . Other human MT
promoters with less significant basal level activity compared with
hMT-IIA may have less high affinity sites because their numerous MREs,
in cooperation with other non-MRE elements, would result in a loss of
metal regulation. Although both trout MREs also are active in
mammalian cell lines, the metal responsiveness of the promoter is
reduced. Since the fold induction accorded by tMREa alone(-84) is
nearly as significant in mammalian cells as in RTH-149 cells, the
reduced metal responsiveness of the whole promoter(-137) fragment
could be caused by smaller contributions by MREb. We do observe some
inhibition of tMT-B activity in mammalian cells by sequences in the
MREb region (from -84 to -137) which is partially relieved
by point mutation of MREb. However, we have found no previous evidence
to support an additional role for MREs as repressors of MT
transcription, although the MRE affinity-purified HeLa cell factor
MRE-BP has been suggested to be a negative regulatory
factor(38) . An alternative explanation for the decreased fold
induction of the trout promoter in mammalian cell lines is that the MRE
organization may favor the cooperative function of the homologous trout
MRE-binding factors, whereas the heterologous mammalian factors are
less able to accomplish synergistic activation of transcription even
though they bind and activate from single MREs. Although the MRE
consensus sequence is conserved from trout to mammals, MT promoter
organization is not. Mammalian MT promoters contain four to six MRE
sequences, whereas the two MREs of the tMT-B promoter can elicit a
comparable metal response(9) . In this sense, the lesser
ability of mammalian metalloregulatory factors to cooperate for
activation of the tMT-B promoter may be a reflection of
species-specific differences in MT promoter organization and the
MRE-binding factor domains responsible for the synergism of MREs. Our results presented in this study indicate that MREs can function
as basal level elements in addition to their role in metal induction.
Combined with a recent report that the mouse MRE-binding factor MTF-1
is absolutely required for mouse MT-I gene basal expression, it is
possible that the cis-acting elements present in MT promoters
are organized such that they are inactive without the physical effects
of MRE-binding factors. In this sense, a key to understanding MT gene
transcription regulation will be to characterize fully the physical
effects of factor interactions with MREs of MT promoters and understand
the mechanisms that are involved in the synergism among MREs and other cis-acting elements. In the future, a comparison of the
functional domains of MRE-binding factors from divergent species, such
as trout and mammals, would be one approach to understanding MRE
function.
FOOTNOTES
- *
- This study was supported in part by a
Medical Research Council of Canada grant (to L. G.). The costs of
publication of this article were defrayed in part by the payment of
page charges. This article must therefore by hereby marked
``advertisement'' in accordance with 18 U.S.C.
Section 1734 solely to indicate this fact.
- §
- Supported by a studentship from the Alberta
Heritage Foundation for Medical Research.
- ¶
- To
whom correspondence should be addressed: Dept. of Biology, University
of Calgary, 2500 University Dr. N. W., Calgary, Alberta, Canada T2N
1N4. Tel.: 403-220-5556; Fax: 403-289-9311.
- (
) - The
abbreviations used are: MT(s), metallothionein(s); MRE,
metal-responsive element; PCR, polymerase chain reaction; CAT,
chloramphenicol acetyltransferase; LUC, firefly luciferase; tMRE,
rainbow trout MT-B gene MRE.
- (
) - S. L.-A. Samson,
unpublished observation.
- (
) - S. Scheiman,
unpublished observation.
ACKNOWLEDGEMENTS
A portion of the site-directed mutagenesis was
completed by L. G. in collaboration with Dr. J. Imbert in the
laboratory of D. H. Hamer, NIH. We acknowledge the excellent technical
assistance of Tapan Karchoudhury.
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