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Volume 270, Number 26, Issue of June 30, pp. 15858-15863, 1995
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Regulation of Neurite Outgrowth and SNAP-25 Gene Expression by the Brn-3a Transcription Factor (*)

Nic D. Lakin (1), Peter J. Morris (1), Thomas Theil (2), Tom N. Sato (3)(§), Tarik Möröy (2), Michael C. Wilson (3), David S. Latchman (1)(¶)

From the (1)Medical Molecular Biology Unit, Department of Molecular Pathology, University College London Medical School, The Windeyer Building, Cleveland Street, London, W1P 6DB, United Kingdom, (2)Institut für Molekularbiologie und Tumorforschung, Philipps Universität Marburg, Emil Mankopff-Strasse 2, D-35037, Marburg, Federal Republic of Germany, and the (3)Department of Neuropharmacology, The Scripps Research Institute, La Jolla, California 92037

ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
REFERENCES

ABSTRACT

SNAP-25 is a presynaptic nerve terminal protein which is also essential for the process of neurite outgrowth in vivo and in vitro. However the processes regulating its expression have not been characterized previously. We show that the gene encoding this protein, SNAP, is strongly activated by the Brn-3a POU (Pit-Oct-Unc) family transcription factor. Expression of both Brn-3a and SNAP-25 increases when ND7 neuronal cells are induced to extend neurite processes by serum removal. Inhibition of Brn-3a expression in these cells inhibits SNAP-25 expression and abolishes the neurite outgrowth that normally occurs in response to serum removal. These results identify Brn-3a as the first transcription factor having a role in process outgrowth in neuronal cells acting, at least in part, via the activation of SNAP-25 gene expression.


INTRODUCTION

The POU (Pit-Oct-Unc) family of transcription factors was originally defined on the basis of a common DNA binding domain present in the mammalian transcription factors Pit-1, Oct-1, and Oct-2 and in the nematode Unc-86 protein. These factors play a critical role in the development of specific cell types, particularly neuronal cells (for reviews, see Verrijzer and Van der Vliet(1993) and Wegner et al.(1993)). In particular, the Pit-1 factor is known to be essential for pituitary gland development, and its inactivation results in dwarfism in both mice (Li et al., 1990) and humans (Radovick et al., 1992). Similarly, the unc-86 mutation in the nematode leads to a failure to develop specific cell types particularly sensory neurons (Desai et al., 1988; Finney et al., 1988).

Following the isolation of the original POU proteins, He et al.(1989) used a degenerate PCR()approach to isolate cDNA clones encoding further POU proteins. One of these, originally known as Brn-3 and now renamed Brn-3a (Lillycrop et al., 1992; Theil et al., 1994) or Brn-3.0 (Gerrero et al., 1993), was highly expressed in sensory neurons and showed strong homology to unc-86. It was therefore suggested to be the mammalian homologue of this nematode factor and to play a similar critical role in the development of mammalian sensory neurons (He et al., 1989). Subsequently using a similar approach, two other closely related mammalian factors were also isolated from neuronal cells and were named Brn-3b (Lillycrop et al., 1992; Xiang et al., 1993), also known as Brn-3.2 (Turner et al., 1994), and Brn-3c (Ninkina et al., 1993) also known as Brn-3.1 (Gerrero et al., 1993).

These three members of the Brn-3 family are the most similar mammalian factors to unc-86 and, together with the Drosophila POU factors I-POU and tI-POU (Treacey et al., 1991, 1992), constitute the POU IV subfamily (Wegner et al., 1993). To obtain evidence on the potential role of the Brn-3 factors in mammalian sensory neurons, we initially studied their expression in the ND7 neuronal cell line from which we originally cloned Brn-3b and which expresses all three factors (Lillycrop et al., 1992).

This cell line was originally prepared by the immortalization of rat dorsal root ganglion neurons by fusion with the C1300 mouse neuroblastoma cell line (Wood et al., 1990). Although these cells proliferate indefinitely in culture, they can be induced to cease dividing and extend neuritic processes of up to 500 µM in length by transfer to serum free medium (Suburo et al., 1992). This differentiation event is accompanied by the movement of secretory granule components and subsequently synaptic vesicle components to the tips of the processes (Wheatley et al., 1992). We showed that the levels of Brn-3a are greatly elevated in the nondividing, process bearing cells compared with the level in undifferentiated cells (Lillycrop et al., 1992). In contrast, the levels of other POU family transcription factors such as Brn-3c or Oct-2 remain unchanged, whereas the level of Brn-3b decreases in the differentiated cells (Lillycrop et al., 1992).

This increased expression of Brn-3a during the in vitro differentiation of ND7 cells to a neuronal-like phenotype suggested it might play a role in this process paralleling the role of the unc-86 gene product in the nematode. Interestingly, in co-transfection experiments, Brn-3a can activate a test promoter bearing a suitable binding site for the Brn-3 factors, whereas Brn-3b cannot do so (Budhram-Mahadeo et al., 1994; Morris et al., 1994). Moreover treatments which result in the differentiation of ND7 cells with an associated rise in Brn-3a also result in the activation of this test promoter (Budhram-Mahadeo et al., 1994). Hence changes in the expression of endogenous Brn-3a can modulate the expression of a target promoter exactly as in co-transfection experiments with exogenous Brn-3a.

These findings suggested, therefore, that the rise in Brn-3a expression which occurs upon differentiation of ND7 cells may play a role in producing the cellular changes which are observed during this process, acting via the activation of specific target genes. We have therefore used an antisense approach to inhibit this increase in Brn-3a expression. We show that this results in a lack of process formation by the ND7 cells which is associated with a reduced expression of SNAP-25 (Oyler et al., 1989; De Camilli, 1993), a protein which is essential for neurite outgrowth (Osen-Sand et al., 1993). Moreover, we show that the SNAP gene encoding this protein is directly activated by Brn-3a.


MATERIALS AND METHODS

Construction of Antisense Cell Lines

The POU domain of Brn-3A was excised from bluescript with HincII and XbaI and inserted in the antisense orientation under the control of the glucocorticoid-inducible MMTV promoter via the SmaI and XbaI sites in the mammalian expression vector pJ5 (Morgenstern and Land, 1990). The POU domain sense construct, which contains a single nucleotide insertion 9 codons into the POU domain that induces a shift in the reading frame of this protein, resulting in the introduction of a stop codon 38 codons into the POU domain), was similarly inserted into compatible sites in the linker region of pJ5.

Expression vectors containing either antisense or sense POU domains, together with a vector conferring resistance to neomycin, were introduced into ND7 cells by the calcium phosphate transfection method of Gorman(1985). Stable transfectants were selected by supplementing media with G418 to a final concentration of 800 µg/ml 48 h after transfection. Independent clones were isolated after approximately 1 week of selection when individual foci of cells were evident and grown in full growth medium supplemented with G418. Putative clones capable of expressing either antisense or sense POU domains were treated with dexamethasone at a final concentration of 1 µM for 24 h to induce expression of the MMTV promoter (Lee et al., 1981).

RNA Isolation and PCR Analysis

RNA was isolated from cells by the guanidinium thiocyanate method (Chirgwin et al., 1979) and used as template for production of cDNA using random hexanucleotide primers (Pharmacia). To ensure no contaminating DNA was present, RNA samples were treated with DNase prior to cDNA synthesis. The resulting cDNA was amplified by PCR essentially according to the method of Kawasaki(1990). Typically 0.125 µg of cDNA was included in each PCR and 15, 20, or 25 cycles of PCR performed to ensure conditions in which the PCR product signal was quantitatively related to input RNA. Controls using RNA samples without reverse transcription were used to demonstrate that contaminating DNA was absent.

In initial screening experiments to confirm that the exogenous constructs were producing sense or antisense POU domain RNAs in the cell lines, PCR was performed using a primer internal to the vector sequence and a primer internal to the POU domain so as not to amplify endogenous Brn.3 mRNA. In subsequent experiments shown in Fig. 1, the level of the sense Brn-3 mRNA in each line was determined by using a primer at the 5`-end of the POU domain (5`-GAC/CCTC/GGAG/AGCGTTCGCCGAGC-3`) in conjunction with a primer internal to the POU homeodomain (5`-GATGGCC/GGCGATCTTCTC-3`). Control reactions using primers which detect ribosomal protein L6 mRNA (5`-ATCGCTCCTCAAACTTGACC-3` and 5`-AACTACAACCACCTCATGCC-3`) were performed in parallel. Following amplification with each pair of primers the PCR products were run on a 2% agarose gel, which was blotted onto a Hybond N nitrocellulose filter (Amersham) and hybridized with homologues probes to detect either total Brn.3 or L6 PCR products.


Figure 1: a, PCR amplification of the endogenous mRNAs encoding Brn-3 or the L6 ribosomal protein in parental ND7 cells (ND7), the cell lines (NDA.9 and NDA.10) containing the Brn-3a POU domain in the antisense orientation, or the control cell line containing the POU domain in the sense orientation with an added stop codon (NDF.5). Prior to differentiation in serum-free medium, cells were either treated with 1 µM dexamethasone (+) or left untreated (-). b, levels of the Brn-3 mRNA in the different cell lines as determined by densitometric scanning of data of the type illustrated in a and equalized on the basis of the level of the L6 ribosomal protein mRNA as determined in parallel amplifications.



Cell Line Differentiation

Induction of the MMTV promoter was achieved by supplementing full growth media with dexamethasone to a final concentration of 1 µM (Lee et al., 1981). Approximately 12-15 h after addition of dexamethasone to cultures, cells were induced to undergo differentiation by incubation in serum-free media consisting of a 1:1 mix of Dulbecco's modified Eagle's medium (Life Technologies, Inc.) and nutrient mix Ham's F-12 (Life Technologies, Inc.) supplemented with human transferrin (5 µg/ml), bovine insulin (250 ng/ml), sodium selenite (20 nM), and dexamethasone (1 µM) (Suburo et al., 1992; Wheatley et al., 1992)). In all experiments control uninduced cultures were analyzed in parallel with experimental cultures. These cultures were identical to experimental cultures, with the exception that MMTV promoter activity was not induced by addition of dexamethasone to either full growth media or differentiation media.

Cultures were incubated in differentiation media for 48 h before cells were photographed to allow scoring of neurite outgrowth. Cultures were scored blind by a second observer unaware of the treatment to which they had been subjected.

Assay of Cellular DNA Synthesis

To measure cellular DNA synthesis, [H]thymidine was added to proliferating cells in 10% fetal calf serum or to cells incubated in differentiation medium for 72 h in the presence or absence of dexamethasone. Cells were harvested 4 h after [H]thymidine addition to cultures and the incorporation of [H]thymidine determined by precipitating cellular DNA with 10% trichloroacetic acid. Values shown represent the average [H]thymidine incorporation of triplicate cultures.

Assay of SNAP-25 Levels

PCR amplifications of the SNAP-25 mRNA were carried out as described above using the primers: 5`-TGACCAGCTGGCTGATGAGTC-3` and 5`-CCCATGTCTAGGGCCATATGA-3`.

For Western blot analysis, cells differentiated in either the absence or presence of dexamethasone were harvested and 5 10 cells of each culture submitted to analysis by SDS-polyacrylamide gel electrophoresis. Gels were transferred to nitrocellulose by Western blotting as described previously (Dhillon et al., 1993) and SNAP-25 detected by probing filters using a rabbit polyclonal antisera raised against SNAP-25. To ensure an equal amount of each sample was loaded onto gels, filters were stripped and re-probed using a control antibody, in this case a mouse monoclonal antisera raised against actin.

Transient Transfection and Chloramphenicol Acetyltransferase Assay

Transfection of DNA was carried out according to the method of Gorman(1985). Routinely, 1 10 ND7 cells (Wood et al., 1990) were transfected with 10 µg of the reporter plasmid and 10 µg of the Brn-3 expression vectors (Theil et al., 1994). In all cases cells were harvested 72 h later. The amount of DNA taken up by the cells in each case was measured by slot blotting the extract and hybridization with a probe derived from the ampicillin resistance gene in the plasmid vector (Abken and Reifenrath, 1992). This value was then used to normalize the values obtained in the chloramphenicol acetyltransferase assay as a control for differences in uptake of plasmid DNA in each sample. Assays of chloramphenicol acetyltransferase activity were carried out according to the method of Gorman(1985) using samples which had been equalized for protein content as determined by the method of Bradford(1976).


RESULTS

To determine whether the change in Brn-3a levels played any direct role in the differentiation of the ND cells, we prepared a construct in which the antisense strand of the Brn-3a POU domain-encoding region was expressed under the control of the glucocorticoid-inducible MMTV promoter. A similar construct expressing the sense strand of the POU domain, but including a stop codon to prevent any protein production, was used as a control.

Two independent cell lines isolated by stable transfection of ND7 cells with the antisense construct showed a clear decrease in the level of endogenous Brn-3 mRNA when treated with dexamethasone to induce the MMTV promoter (Fig. 1). In contrast no decrease was observed when the control cell line containing the construct in the sense orientation was treated in this way indicating that this reduction was due to the induction of the antisense RNA in response to dexamethasone treatment. Similar results were obtained using three independent RNA preparations derived from each of the cell lines with all assays being carried out in the linear range of the PCR assay (see ``Materials and Methods'').

Interestingly the basal level of the Brn-3 mRNA in the antisense lines was somewhat lower than in the parental ND7 cells or the sense cell line (Fig. 1), indicating that the basal expression directed by the MMTV promoter in the absence of induction was having some effect on Brn-3 levels. As expected the levels of the mRNAs encoding either the L6 ribosomal protein (Fig. 1) or another POU family transcription factor, Oct-2, were unaltered in any of the cell lines (data not shown). Although the antisense Brn-3a probe may also bind to the closely related Brn-3b and Brn-3c mRNAs, these mRNAs are present at relatively low levels in differentiated ND7 cells compared with the Brn-3a mRNA (Lillycrop et al., 1992), indicating that the predominant effect is likely to be on this mRNA. In agreement with this a clear decline in the Brn-3a mRNA level in the antisense lines was also observed with PCR primers specific for this mRNA (data not shown). Hence the level of the Brn-3a mRNA has been specifically reduced in the treated cells presumably by RNase H-mediated degradation of RNA-RNA heteroduplexes (Walder and Walder, 1988; Agrawal et al., 1990).

Having established that the NDA.9 and NDA.10 antisense cell lines had lower levels of the Brn-3a mRNA, we investigated the effect of transferring these cells and the sense strand-expressing cell line to serum-free medium. In these experiments (Fig. 2) all the cell lines showed a similar inhibition of DNA synthesis upon transfer which was comparable with that observed in the parental ND7 cells. Moreover, no further decrease was observed in DNA synthesis upon treatment of the cell lines with dexamethasone to induce expression of the antisense construct. In contrast, the NDA.9 and NDA.10 showed a very significant decrease in the percentage of cells which produced processes upon transfer to serum free medium and this effect was observed even in the absence of dexamethasone induction paralleling the reduction in Brn-3a levels observed under this condition (Fig. 3a).


Figure 2: [H]Thymidine incorporation in parental ND7 cells, the antisense Brn-3 cell lines (NDA.9 and NDA.10), or the sense cell line (NDF.5) when proliferating in serum-containing medium (P) or following transfer to differentiation-inducing serum free medium (D) in the presence (+) or absence (-) of 1 µM dexamethasone.




Figure 3: a, percentage of parental ND7 cells or the NDF.5, NDA.9, or NDA.10 clones which formed neuritic processes in serum-free medium when maintained in the presence (+) or absence (-) of 1 µM dexamethasone. b, representative fields of the control NDF.5 or the antisense NDA.9 and NDA.10 cells in serum-free medium in the presence of absence or 1 µM dexamethasone.



In response to dexamethasone treatment, a further reduction in process formation was observed in both antisense cell lines paralleling the further reduction in Brn-3a levels (Fig. 3a), and the processes which did form were much shorter (Fig. 3b). In contrast a small enhancement in process formation was observed when the sense cell line was treated with dexamethasone (Fig. 3a), and no effect was observed in the parental ND7 cells (data not shown). No significant differences in cell survival as assayed by the ability of cells to exclude trypan blue were noted in any of the cultures following transfer to serum-free medium either before or after dexamethasone induction. The antisense cells therefore continue to survive without extending processes (Fig. 4). Hence the inhibition of Brn-3a synthesis in the antisense lines is associated with reduced neurite outgrowth.


Figure 4: Cell viability in the different cell lines following transfer to serum free medium with (+) or without (-) 1 µM dexamethasone.



In view of the ability of Brn-3a to activate the expression of specific target genes, it is likely that the inhibition of process outgrowth in the antisense lines is dependent upon a failure to activate specific target genes whose protein products are required for neurite outgrowth. One obvious candidate gene is that encoding SNAP-25 (synaptosomal-associated protein of M 25,000; Oyler et al., 1989) which plays a critical role in the process of vesicle exocytosis which is required for axon outgrowth (De Camilli et al., 1993. Osen-Sand et al., 1993; Huttner, 1993). Thus the direct inhibition of SNAP-25 expression using an antisense approach results in a failure of axon outgrowth both in vitro and in vivo and specifically affects neurite elongation as opposed to the formation of small spikes (Osen-Sand et al., 1993). Interestingly, the levels of SNAP-25 increase in undifferentiated ND7 cells following serum removal (Fig. 5), whereas synaptic vesicle components such as synaptophysin redistribute to the tips of the processes but do not increase in abundance (Suburo et al., 1992; Wheatley et al., 1992). We therefore measured the levels of SNAP-25 in the antisense cell lines. As shown in Fig. 5, both the antisense lines showed reduced levels of the SNAP-25 mRNA and protein when treated with dexamethasone compared with the sense cell line or parental ND7 cells. These effects were consistently observed with several independent RNA and protein samples isolated from each of the cell lines.


Figure 5: a, representative PCR amplification of the SNAP-25 mRNA in proliferating (P) or differentiated (D) ND7 cells or in the NDF.5, NDA.9, or NDA.10 cell lines following differentiation by transfer to serum-free medium in the presence (+) or absence (-) of 1 µM dexamethasone. b, Western blot of protein samples from the various cell lines (as in a) with a polyclonal antibody to SNAP-25. Arrows indicate molecular weight markers of the sizes indicated. c, levels of the SNAP-25 protein in the different cell lines following differentiation in the presence (+) or absence (-) of dexamethasone as obtained by densitometric scanning of data of the type illustrated in b and equalization on the basis of the level of the actin protein in each sample as determined in parallel blots.



Hence the reduction in neurite outgrowth in the antisense cell lines is paralleled by a reduction in SNAP-25 expression. In order to determine whether the Brn-3a transcription factor was able to activate the SNAP-25 gene promoter, we co-transfected ND7 cells with a Brn-3a expression vector (Theil et al., 1994; Morris et al., 1994) together with a construct containing the promoter of the SNAP-25 gene (Hess et al., 1992)()from -2200 base pairs upstream of the transcriptional start site to +106 bases downstream. As shown in Fig. 6, the full SNAP-25 promoter was strongly stimulated by co-transfection with the Brn-3a expression vector compared with the level of promoter activity observed upon co-transfection with the empty expression vector alone. Similar stimulation was also observed with a construct containing the sequence from -288 to +106 of the SNAP-25 promoter. In contrast a truncated promoter containing only the sequence from -126 to +106 was not transactivated (Fig. 6), indicating that this effect is specific and requires sequences between -288 and -126 in the SNAP-25 promoter.


Figure 6: Chloramphenicol acetyltransferase (CAT) assay of constructs containing either 2200 (construct A), 288 (construct C), or 126 (construct D) bases of DNA 5` to the transcriptional start site of the SNAP-25 gene linked to the CAT gene. The target plasmids were co-transfected into ND7 cells with either empty expression vector (V) or the expression vector encoding Brn-3a (3). a shows a representative assay of constructs A and D, whereas b shows the mean of three experiments with constructs A, C, and D whose standard deviation is shown by the bars.




DISCUSSION

Both we (Lillycrop et al., 1992) and others (He et al., 1989; Gerrero et al., 1993) have shown that the Brn-3a POU family transcription factor is highly expressed both in neuronal cells in vivo as well as in neuronal cell lines in vitro with expression being regulated during differentiation both in vivo and in vitro. In addition this factor can trans-activate artificial test promoters containing appropriate target sites such as the octamer motif bound by many POU family transcription factors (Budhram-Mahadeo et al., 1994; Morris et al., 1994) or a high affinity DNA binding site found in the corticotrophin-releasing hormone gene promoter (Gerrero et al., 1993). Moreover, such trans-activation can also be observed on natural gene promoters such as those for the genes encoding pro-opiomelanocortin (Gerreo et al., 1993) or -interexin (Budhram-Mahadeo et al., 1995).

When taken together with the relationship between Brn-3a and the nematode Unc-86 protein (He et al., 1989), these findings suggest that Brn-3a is likely to play a key role in some aspect of neuronal development and differentiation. To date, however, no such role has been identified. However, the significant rise in Brn-3a levels when ND7 cells are treated with serum-free medium (Lillycrop et al., 1992) or cyclic AMP (Budhram-Mahadeo et al., 1994) suggests a possible association with the events which occur during this process.

Thus these treatments result in the cessation of cell division and the extension of neuritic processes (Suburo et al., 1992; Wheatley et al., 1992). In addition a proportion of the cells in serum-free medium undergo programmed cell death by apoptosis, although this effect is not observed in the cells treated with cyclic AMP (Howard et al., 1993).

By using an antisense approach we show that although the rise in Brn-3a expression plays no apparent role in growth arrest or apoptosis, it appears to be involved in the extension of neurite processes. Moreover, it appears to achieve this effect, at least in part, by activating expression of the SNAP-25 gene which increases during the normal differentiation process of ND7 cells. Thus Brn-3a can activate the SNAP-25 gene promoter, and the up-regulation of this factor in ND7 cell differentiation may therefore be responsible for the corresponding increase in SNAP-25 expression during this process. Similarly the inhibition of Brn-3a expression using an antisense approach would result in the observed decrease in SNAP-25 expression and hence the failure of neurite outgrowth. These results therefore implicate Brn-3a as the first example of a transcription factor which regulates neurite outgrowth acting via the modulation of SNAP-25 gene expression.

Interestingly in our antisense cell lines we also observed a decrease in the expression of two synaptic vesicle proteins rab3A and synaptophysin (Bennett and Scheller, 1993) in response to dexamethasone treatment, an effect which was not observed in the sense cell line (data not shown). As the inhibition of SNAP-25 expression using a direct antisense approach to target the SNAP-25 mRNA also results in decreased synaptophysin expression (Osen-Sand et al., 1993), it is possible that these effects are an indirect consequence of the direct effect of Brn-3a on SNAP-25 expression. Alternatively, the ability of Brn-3a to activate the synapsin I gene promoter (data not shown) suggests that it may be able to directly activate the genes encoding several synaptic proteins involved in neurite outgrowth.

Our transfection experiments raise the possibility that Brn-3a directly activates the SNAP-25 promoter by interacting with the region of the promoter between -288 to -126. Interestingly, both the octamer consensus sequence (for review, see Falkner et al.(1986)) and a distantly related sequence in the corticotrophin-releasing hormone promoter have been shown to mediate activation by Brn-3a (Budhram-Mahadeo et al., 1994; Gerreo et al., 1993). Inspection of the region of the SNAP-25 promoter from -288 to -126 which is critical for activation by Brn-3a does not, however, reveal any motifs closely related to these sequences. It is also possible, therefore, that Brn-3a may act indirectly on the SNAP-25 gene, perhaps by activating the gene encoding another trans-activating factor which in turn activates the SNAP-25 promoter.

Whatever the case, it is clear that Brn-3a can directly or indirectly activate the SNAP-25 gene promoter via sequences located between -288 and -126 of the promoter. In turn such induction would allow the production of the SNAP-25 gene product enabling it to fulfill its essential role in the exocytosis required for neuronal process outgrowth and potentially in synaptic vesicle exocytosis and nerve terminal plasticity.


FOOTNOTES

*
This work was supported by Action Research and the Medical Research Council (to D. S. L.) and by National Institutes of Health Grant MH 48989 (to M. C. W.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore by hereby marked ``advertisement'' in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

§
Present address: Roche Institute of Molecular Biology, Nutley, NJ.

To whom correspondence should be addressed.

The abbreviations used are: PCR, polymerase chain reaction; MMTV, murine mammary tumor virus.

T. N. Sato and M. C. Wilson, unpublished observations.


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