![]()
|
|
||||||||
(Received for publication, August 8,
1994; and in revised form, October 18, 1994) From the
Using vacuolar membranes from Neurospora crassa, we
observed that sulfite prevented the loss of vacuolar ATPase activity
that otherwise occurred during 36 h at room temperature. Sulfite
neither activated nor changed the kinetic behavior of the enzyme.
Further, in the presence of sulfite, the vacuolar ATPase was not
inhibited by nitrate. We tested the hypothesis that sulfite acts as
a reducing agent to stabilize the enzyme, while nitrate acts as an
oxidizing agent, inhibiting the enzyme by promoting the formation of
disulfide bonds. All reducing agents tested, dithionite, selenite,
thiophosphate, dithiothreitol and glutathione, prevented the loss of
ATPase activity. On the other hand, all oxidizing agents tested,
bromate, iodate, arsenite, perchlorate, and hydrogen peroxide, were
potent inhibitors of ATPase activity. The inhibitory effect of the
oxidizing agents was specific for the vacuolar ATPase. The
mitochondrial ATPase, assayed under identical conditions, was not
inhibited by any of the oxidizing agents. Analysis of proteins with
two-dimensional gel electrophoresis indicated that nitrate can promote
the formation of disufide bonds between proteins in the vacuolar
membrane. These data suggest a mechanism to explain why nitrate
specifically inhibits vacuolar ATPases, and they support the proposal
by Feng and Forgac (Feng, Y., and Forgac, M.(1994) J. Biol.
Chem. 269, 13244-13230) that oxidation and reduction of
critical cysteine residues may regulate the activity of vacuolar
ATPases in vivo. The vacuolar ATPase is a complex proton pump found in many types
of membranes in eukaryotic cells. Named after the enzyme found in
vacuolar membranes from plants and fungi (Kakinuma et al.,
1981; Bowman and Bowman, 1982; Mandala and Taiz, 1986; Randall and Sze,
1986), the enzyme has also been found in many organellar membranes in
animal cells such as lysosomes (Galloway et al., 1988;
Moriyama and Nelson, 1989a), coated vesicles (Forgac, 1989, 1992; Stone et al., 1989), and chromaffin granules (Nelson, 1992a, 1992b).
Plasma membranes of specialized proton-secreting cells also have
vacuolar ATPases. Examples are the goblet cells of insect midgut
(Wieczorek, 1992), the intercalated cells of kidney tubules (Gluck,
1992) and the osteoclasts surrounding bone (Chatterjee et al.,
1993). The function of the vacuolar ATPase is to generate an
electrochemical gradient for protons across the membrane and in many
cases to acidify an internal compartment. A major unsolved problem is
how a single type of enzyme is regulated to establish different proton
gradients across different membranes. For example, the interior of
coated vesicles is essentially the same pH as the cytosol while the
interior of the lysosome may be 2 pH units more acidic (Forgac, 1989;
Mellman, 1992). One possible explanation is that different isoforms
encode organelle-specific subunits (Manolson et al., 1994). In
both plants and animals evidence has been reported for isoforms of
genes encoding subunits of the vacuolar ATPase (Bernasconi et
al., 1990; Hasebe et al., 1992; Lai et al.,
1988; Peng et al., 1994; Puopolo et al., 1992). As
appears to be the case for the osteoclast, however, these isoforms may
be specific for different types of cells rather than specifying
different organelles within a cell (van Hille et al., 1993).
Indeed in Saccharomyces cerevisiae and Neurospora crassa only a single set of genes appears to encode almost all subunits
of the vacuolar ATPase (Anraku et al., 1992; Bowman et
al., 1992b; Kane and Stevens, 1992; Nelson, 1992a). Feng and
Forgac (1992a, 1992b) have recently suggested that the activity of the
vacuolar ATPase may be regulated in vivo by
oxidation/reduction of sulfhydryl groups. While exploring the effects
of nitrate and sulfite on the vacuolar ATPase from N. crassa we have obtained data that support this idea. As described below,
these data show how the activity of the ATPase can be stabilized in
vitro and they offer an explanation for the mechanism of nitrate
inhibition. Nitrate has long been known as a relatively specific
inhibitor of the vacuolar ATPase in many organisms (Bowman and Bowman,
1982; Bowman, 1983; Mandala and Taiz, 1986; Rea et al., 1987;
Bennett et al., 1988; Moriyama and Nelson, 1989b; Arai et
al., 1989). Its mechanism of inhibition has been unclear.
Relatively high concentrations (approximately 50 mM) are
typically required for half-maximal inhibition, and the degree of
inhibition is strongly dependent on the time of exposure. One possible
clue to the mechanism was the observation that incubation of membranes
in nitrate, thiocyanate, or iodide caused the dissociation of
peripheral subunits of the vacuolar ATPase (Rea et al., 1987;
Arai et al., 1989; Bowman et al., 1989; Moriyama and
Nelson, 1989b; Kane et al., 1989; Ward et al., 1991).
The effectiveness of these anions as inhibitors and in dissociation of
subunits followed the Hofmeister series, i.e. SCN This explanation is not entirely satisfactory. The
concentration of nitrate used to inhibit the ATPase is high but not
nearly so high as is typically used for chaotropic dissociation (Hatefi
and Hanstein, 1974). The concentrations of nitrate which inhibit
activity are often much lower than the concentrations required for
dissociation of subunits. Several laboratories have reported that
inhibition by nitrate appears to occur by two different mechanisms
(Arai et al., 1989; Kibak et al., 1993; Rea et
al., 1987). Furthermore, for the vacuolar ATPase in osteoclasts
(Chatterjee et al., 1993) and in kidney cells (Wang and Gluck,
1990) nitrate is a potent inhibitor but does not appear to cause the
dissociation of subunits from the enzyme. While nitrate is a
chaotrope, it is also an oxidizing agent. As reported below, we have
found that the activity of the N. crassa vacuolar ATPase can
be stabilized with antioxidants such as sulfite. We have examined the
ability of sulfite to prevent inhibition by nitrate and have explored
the idea that the mechanism of nitrate inhibition is to cause the
formation of disulfide bonds within the vacuolar ATPase.
Mitochondrial membranes were isolated as described previously
(Bowman and Bowman, 1988) with specific activities of 2-4
µmol P
Sulfite has been reported to change the kinetic behavior of
F-type ATPases (Du and Boyer, 1990; Vasilyeva et al. 1982),
archaebacterial ATPases (Inatomi, 1986; Konishi et al. 1987;
Lübben and Schafer, 1987; Nanba and Mukohata, 1987;
Schobert and Lanyi, 1989), and the yeast vacuolar ATPase (Kibak et
al., 1993). We measured the activity of the N. crassa vacuolar ATPase using standard assay conditions (see
``Experimental Procedures'') in the presence and absence of
1-200 mM Na
Figure 1:
Effect of sulfite on the substrate
affinity of vacuolar membrane ATPase. Vacuolar membranes were assayed
for ATP hydrolysis (as described under ``Experimental
Procedures'') in ATPase assay mix containing 5 mM MgSO
Figure 2:
Effect of sulfite on the pH profile of
vacuolar membrane ATPase activity. Vacuolar membranes were assayed for
ATP hydrolysis in ATPase assay mix adjusted to the indicated pH with
HCl or KOH. 100 mM Na
To explore the possibility that the
vacuolar ATPase was more stable when suspended in sulfite we examined
activity as a function of time at room temperature. The ATPase activity
of N. crassa vacuolar membranes, suspended in 1 mM EGTA, pH 7.4, was essentially unchanged after 24 h at 4 °C
(data not shown). If left at room temperature for 24 h, all of the
activity was lost. Fig. 3shows the effect of adding ATP or
MgATP. MgATP slightly stabilized, while ATP by itself significantly
stabilized the activity. In other experiments not shown, the presence
of Mg
Figure 3:
Sulfite increases the stability of the
vacuolar membrane ATPase. Vacuolar membranes, suspended at 0.5 mg of
protein/ml, were incubated at room temperature in either 1 mM EGTA, MgATPase assay mix (see ``Experimental
Procedures''), or 1 mM EGTA plus 5 mM Na
Because
sulfite is frequently used as an ``antioxidant'' we tested
the ability of other reducing agents to stabilize the activity of the
vacuolar ATPase. Dithiothreitol is often used in the preparation of
vacuolar ATPases, but at the concentrations effective for other
organisms (typically 5 mM) it did not prevent inactivation of
the N. crassa ATPase. In the experiments shown in Fig. 4, membranes were suspended in ATPase assay mix in the
absence (0 concentration in each panel) or presence (concentrations
shown on x axis of each panel) of reducing agents, and
incubated at room temperature for 12 h. With no added reducing agent,
the membranes lost half of their ATPase activity. Dithiothreitol at
high concentrations, e.g. 300 mM, prevented loss of
activity. More effective, however, were a group of reducing agents
which are smaller than dithiothreitol. Selenite
(Na
Figure 4:
Reducing agents stabilize the vacuolar
ATPase. Vacuolar membranes, suspended at 0.5 mg of protein/ml, were
incubated in ATPase assay mix with the indicated amounts of reducing
agents. After 12 h at 25 °C, the samples with no added reducing
agents had lost 50% of their initial ATPase activity. At that time
samples were centrifuged for 15 min in a microcentrifuge at 16,000
If reducing
agents prevented loss of ATPase activity, then oxidizing agents might
be effective inhibitors of the vacuolar ATPase. Nitrate and
thiocyanate, known inhibitors of vacuolar ATPase, are moderately strong
oxidizing agents. As shown in Fig. 5, we tested nitrate and
several other oxidizing agents, iodate, bromate, arsenite, perchlorate,
and hydrogen peroxide, and found all of them to be potent inhibitors of
the vacuolar ATPase when incubated in the presence of 5 mM MgATP. To see if the inhibitory effects of these oxidizing agents
was specific for the vacuolar ATPase, we also tested these reagents
with the mitochondrial ATPase, an enzyme closely related to the
vacuolar ATPase in structure and mechanism. As shown in Table 1,
under identical assay conditions oxidizing agents which inhibited the
vacuolar ATPase had no inhibitory effect on the activity of the
mitochondrial ATPase. In fact, bromate had the surprising effect of
increasing the ATPase activity of mitochondrial membranes.
Figure 5:
Oxidizing agents inactivate the vacuolar
ATPase. Vacuolar membranes, suspended at 0.5 mg of protein/ml, were
incubated in ATPase assay mix with the indicated amounts of oxidizing
agents for 45 min at 25 °C. Samples were centrifuged for 15 min in
a microcentrifuge at 16,000
Focusing
on nitrate, we assayed the ability of sulfite to block inhibition. In Fig. 6, vacuolar membranes were incubated in 50 mM nitrate together with varying concentrations of sulfite. After 1 h
at room temperature ATPase activity was assayed. The results showed
that increasing levels of ATPase activity were retained with increasing
concentrations of sulfite. Inhibition by nitrate was effectively
blocked by 100 mM sulfite. We had previously observed (Bowman et al., 1989) that nitrate also caused the release of the
peripheral subunits of the ATPase from the vacuolar membrane. In the
experiment shown in Fig. 6we measured the relative amounts of
peripheral subunits of the ATPase released into the supernatant. The
results indicated that sulfite blocked the release of ATPase subunits
with the same concentration dependence seen for protection of ATPase
activity.
Figure 6:
Sulfite blocks ATP-dependent
nitrate-inactivation. Vacuolar membranes, resuspended at 0.5 mg of
protein/ml, were incubated in ATPase assay mix plus 50 mM NaNO
A straightforward interpretation of these results is that
ATPase activity can be inhibited by the oxidation of specific residues
within the enzyme and that reducing agents prevent this oxidation. Feng
and Forgac (1992a, 1992b) have shown that the vacuolar ATPase of bovine
coated vesicles can be reversibly inhibited by reaction of cystine in
the medium with Cys-154 in the A subunit. We incubated N. crassa vacuolar and mitochondrial membranes with cystine and observed
that the vacuolar ATPase was inhibited while the mitochondrial ATPase
was unaffected (Table 1). Tetrathionate, another reagent which
promotes the formation of disulfide bonds (Means and Feeney, 1970), had
the same effect as cystine. In several important aspects inhibition
by cystine and nitrate were different. First, as has been shown by many
laboratories, inhibition by nitrate is strongly promoted by the
presence of ATP (Arai et al., 1989; Bowman et al.,
1989; Moriyama and Nelson, 1989b; Rea et al., 1987). By
contrast ATP prevented inhibition by cystine (Feng and Forgac, 1992b).
As shown in Table 2, after 4 h in 1 mM cystine ATPase
activity was completely inhibited. This inhibition could be partially
prevented (nearly 50%) with the inclusion of 5 mM ATP. By
contrast, enzyme incubated with nitrate in the absence of ATP lost
little activity. Inclusion of ATP with nitrate caused a complete loss
of activity. Inclusion of sulfite (100 mM) along with cystine
blocked the inhibition but did not reverse it if added after the
inactivation (data not shown).
Second, inhibition by cystine was
reversible by DTT, even after 24 h, while inhibition by nitrate was
irreversible. Table 3shows the effect of DTT on vacuolar
membranes treated with oxidizing agents. DTT reactivated enzymes that
had been treated with tetrathionate or cystine. DTT did not reactivate
nitrate or arsenite treated membranes. Similarly, sulfite at high
concentrations (100 mM) blocked the inhibition but did not
reverse it (data not shown). Third, we also observed that inhibition by
cystine, unlike nitrate, did not cause dissociation of the peripheral
subunits of the ATPase. In fact incubation in cystine protected the
ATPase against nitrate-induced dissociation of the peripheral V
The hypothesis that nitrate
oxidizes the enzyme and causes the formation of disulfide bonds was
tested by analyzing vacuolar proteins after two-dimensional
polyacrylamide gel electrophoresis. The membranes were first incubated
in the absence or presence of 50 mM nitrate. The polypeptides
were then separated in the first dimension in the absence of reducing
agent. Mercaptoethanol was added and the polypeptides were
electrophoresed in the second dimension. All polypeptides are predicted
to lie on a diagonal, unless they have initially been cross-linked by
disulfide bonds, in which case they will migrate faster in the second
dimension and appear as off-diagonal spots (Allison et al.,
1982; Traut et al., 1988). After incubation in tetrathionate,
arsenite, or nitrate the vacuolar membranes showed a prominent
off-diagonal polypeptide of approximately 70 kDa that was not seen in
the control (data not shown). Since inhibition was correlated with the
appearance of the off-diagonal spot, we tested whether the 67-kDa
subunit of the vacuolar ATPase was involved in this oxidation. Using a
polyclonal antibody, we identified the 67-kDa subunit in the diagonal,
but the off-diagonal polypeptide was only faintly labeled. This
experiment was repeated several times with the same result. Thus, we
were not able to identify definitively the off-diagonal spot. However,
the data clearly indicated that incubation in nitrate could promote the
formation of disulfide bonds. In chloroplast F-type ATPase (Du and Boyer, 1990; Vasilyeva et al., 1982), archaebacterial ATPase (Inatomi, 1986;
Lübben and Schafer, 1987; Schobert and Lanyi,
1989), and yeast vacuolar ATPase (Kibak et al., 1993) the rate
of ATP hydrolysis versus time often exhibits a biphasic
pattern. A fast initial rate is sustained for a few seconds or minutes,
followed by a significantly slower rate. Addition of sulfite to the
assay mixture causes the fast initial rate to be sustained and can also
reactivate enzyme in which the rate had slowed. This behavior has been
explained by postulating that during ATP hydrolysis an inhibited form
of the ATPase with tightly bound ADP accumulates. In the presence of
sulfite the tightly bound ADP is released (Du and Boyer, 1990). With
the exception of the enzyme from S. cerevisiae this kind of
kinetic behavior has not been reported for vacuolar ATPases. In our
analysis of the N. crassa vacuolar ATPase sulfite was not
observed to significantly stimulate hydrolysis or to change the K Our data indicated
that sulfite significantly slows the inactivation of the enzyme but
cannot reactivate after ATPase activity is lost. Most importantly,
sulfite prevented inhibition of the enzyme by nitrate. We propose a
mechanism which may explain why nitrate and related compounds inhibit
the vacuolar ATPase. These compounds act not as chaotropes, as we and
others originally suggested (Bowman et al., 1989; Rea et
al., 1987) but as oxidizing agents, promoting the formation of
disulfide bonds (Means and Feeney, 1970; Gardlik and Rajagopalan,
1991; Guerrieri and Papa, 1982). In this report we have shown that
other oxidizing agents, e.g. bromate, perchlorate, iodate,
arsenite, and tetrathionate are also potent inhibitors of the vacuolar
ATPase. Sulfite stabilizes the vacuolar ATPase and blocks inhibition
apparently because it is a good reducing agent (Means and Feeney,
1970). Reducing agents that are larger molecules than sulfite, such as
dithiothreitol, are not as effective in protecting the N. crassa enzyme, but are effective in stabilizing vacuolar ATPase in
mammalian cells (Feng and Forgac, 1992a). Smaller sized reducing
reagents, e.g. dithionite and selenite protect the N.
crassa enzyme nearly as well as sulfite. These results suggest
that the oxidation site is partially buried within the N. crassa enzyme. A model consistent with these results is shown in Fig. 7. In the absence of ATP or other nucleotides, the active
site of the enzyme can be occupied by cystine which can form a
disulfide bond with a cysteine residue, via thio-disulfide
exchange. Forgac's laboratory has reported that both cystine and N-ethylmaleimide bind to Cys-254 in the 67-kDa subunit of the
bovine vacuolar ATPase (Feng and Forgac, 1992a, 1994). Enzyme inhibited
by cystine does not dissociate and, in fact, can be readily reactivated
by dithiothreitol. When ATP is bound, a conformational change occurs
which makes the enzyme susceptible to nitrate and other oxidizing
agents. The data indicate that nitrate can cause intermolecular
cross-linking of polypeptides by disulfide bonds, but we have not
directly demonstrated that this cross-linking causes inhibition or
dissociation. We suggest that a disulfide bond is formed, probably
within or between subunits of the enzyme, quickly followed by
dissociation of the peripheral sector (Bowman et al., 1989).
Thus, inhibition by nitrate is effectively irreversible. By keeping the
sulfhydryl groups of cysteine residues reduced, sulfite can block
inhibition by either nitrate or cystine.
Figure 7:
Model for the mechanism of inhibition of
vacuolar ATPase by cystine and nitrate. The ATPase is depicted as being
composed of two sectors. After exposure to nitrate the peripheral,
ATP-binding sector, can dissociate from the integral membrane sector.
Sulfhydryl groups within the enzyme are represented by SH.
Further details are given in the text.
Puopolo and Forgac(1990)
reported that ATPase from mammalian coated vesicles, dissociated with
high concentrations of iodide, could be reassembled if the iodide was
removed in the presence of the reducing agent One appeal of
this explanation for nitrate inhibition is that it can explain the
specificity of nitrate for vacuolar ATPases as opposed to F-type
ATPases. The A and B subunits of the vacuolar ATPases contain several
cysteine residues, three of which are conserved in all sequenced A
subunits (Taiz et al.(1994) and references therein) and one of
which is conserved in the B subunits (Puopolo et al.(1992) and
references therein). By contrast, the homologous If the cysteine residues in the 67-kDa subunit are
the targets of nitrate inhibition, then the recent data of Taiz et
al. (1994) are of particular interest. In this report the three
conserved cysteines in the vacuolar ATPase from S. cerevisiae were each changed to serine residues. Cys-254, which corresponds
to the residue that binds N-ethylmaleimide and cystine in the
bovine vacuolar ATPase (Feng and Forgac, 1992a, 1994) was changed to
serine without loss of ATPase activity. Furthermore, the altered ATPase
had the same sensitivity to nitrate as the wild type. Changing either
of the other conserved cysteines (Cys-284 > Ser, or Cys-538 >
Ser) inactivated the ATPase. It is because of these data that we
suggest (Fig. 7) that inhibition by nitrate occurs at a
different site than that affected by cystine. Our results suggest
that sulfite will be useful in development of procedures to purify this
complex and sometimes unstable enzyme. In our current protocols we
often observe a separation of the integral membrane and the peripheral
components during purification on sucrose gradients (Bowman et
al., 1992b). Preliminary results indicate the enzyme stays intact
in the presence of sulfite. Of broader significance, the results
support proposals from other laboratories (Feng and Forgac, 1992a,
1992b, 1994; Kibak et al., 1993) that within the cell, the
redox state of the immediate environment may play a key role in
regulating the activity of vacuolar ATPases.
Volume 270,
Number 4,
Issue of January 27, 1995 pp. 1557-1563
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
> I
> NO
![]()
Cl
(Hatefi and Hanstein, 1974). Thus, the
suggestion was made by our laboratory and others that nitrate was
acting as a chaotropic salt, inhibiting the vacuolar ATPase by
disrupting subunit structure (Bowman et al., 1989; Rea et
al., 1987).
Materials
Sodium salts of ATP, glutathione
(oxidized and reduced forms), cystine, sulfate, sulfite, selenite,
thiosulfate, nitrate, nitrite, arsenate, arsenite, bromate, iodate, and
tetrathionate were purchased from Sigma. Sodium dithionite was
purchased from Fluka Chemie, Buchs, Switzerland, hydrogen peroxide from
Mallinckrodt, Paris KN, and dithiothreitol (DTT) (
)from
American Bioanalytical, Natick, MA.Preparation of Vacuolar and Mitochondrial
Membranes
For our initial experiments, vacuolar membranes were
prepared as described previously (Bowman and Bowman, 1988). However, we
have obtained higher yields of vacuolar membranes by a modification of
this method. As in the previous procedure cells were harvested,
disrupted with glass beads and centrifuged in a Sorvall GSA rotor for
10 min at 1000 g, 4 °C to pellet nuclei, cell
wall, and other cellular debris. The supernatant was centrifuged in the
same rotor for 20 min at 25,000
g, 4 °C to pellet
the vacuoles and mitochondria. In the modified procedure 1 ml of 50%
sucrose (in 10 mM Hepes, 1 mM EDTA, 2 mM Na
ATP, pH adjusted to 7.4 with Tris base) was layered
below 2 ml of the resuspended organellar pellet in thick-walled
polycarbonate centrifuge tubes. The organellar suspension was
centrifuged for 20 min at 200,000 g, 4 °C, in a
Beckman tabletop ultracentrifuge using the TLA 100.3 rotor.
Mitochondria and cell membranes remained above the layer of sucrose
while the vacuoles formed a pellet beneath the sucrose. The vacuoles
were lysed in 1 mM EGTA (pH adjusted to 7.4 with Tris base)
plus 2 mM ATP (EGTA + ATP) and then centrifuged for 5 min
at 16,000
g, 4 °C to pellet contaminating heavy
debris, mostly cell wall fragments. The supernatant was removed and
centrifuged for 10 min at 150,000
g, 4 °C to
pellet the vacuolar membranes. Vacuolar membranes were washed once by
resuspension in EGTA + ATP and centrifugation for 10 min at
100,000
g, 4 °C. The pellet, containing purified
vacuolar membranes was resuspended in EGTA + ATP to a final
protein concentration of 5-10 mg/ml, frozen in liquid nitrogen,
and stored at -70 °C. With these alterations to the procedure
membranes have been prepared in significantly less time; 30 liters of
mycelial culture (harvested at 1.0 mg/ml, dry weight) were processed in
3 h. Vacuolar membranes were routinely isolated with specific
activities of 2-5 µmol P
/min/mg of protein, and
protein yields of 3-10 mg of vacuolar membrane protein.
/min/mg of protein.Assay of Vacuolar and Mitochondrial
Membranes
Frozen aliquots of vacuolar membranes were thawed in
room temperature water, diluted in 9 volume of 1 mM EGTA plus 100 mM NaCl (pH adjusted to 7.4 with Tris
base), and incubated for 10 min at 4 °C. This allowed for release
and subsequent removal of loosely associated, peripheral proteins. The
suspension was centrifuged in a microcentrifuge for 20 min at 16,000
g, 4 °C. The pelleted vacuolar membranes were
resuspended to their original volume in 1 mM EGTA, pH 7.4 (at
approximately 5 mg of protein/ml). Membranes were typically diluted in
9
volume of treatment solution, to a final concentration of 0.5
mg of protein/ml. ATPase reactions were performed by adding 10-30
µl of the resuspended membranes into 0.5 ml of vacuolar ATPase
assay mix (10 mM NH
Cl, 5 mM Na
ATP, 5 mM MgSO
, 10 mM Pipes, pH adjusted to 7.4 with Tris base). ATPase activity, as
determined by P
release, was assayed in vacuolar membrane
ATPase assay mix for 10 min at 30 °C as described previously
(Bowman and Bowman, 1988).Two-dimensional Polyacrylamide Gel
Electrophoresis
To identify polypeptides with intermolecular
disulfide bonds, vacuolar membrane proteins were first electrophoresed
in their unreduced form and subsequently reduced and run through a
second dimension (Allison et al., 1982; Traut et al.,
1988). Briefly, membranes were suspended in 9 volume of ATPase
assay mix in 50 mM NaNO
,
Na
SO
, or Na
S
O
for 1 h at 25 °C. Vacuolar membrane proteins were then
denatured by treatment in 1% SDS at 70 °C for 20 min. Samples were
run in the first dimension through a 3% stacking, 13% resolving
polyacrylamide gel (Bowman et al., 1981) until the protein had
entered 5.5 cm into the resolving gel. The sample lanes were excised
and reduced in a 50 mM Tris buffer solution, pH 8.8,
containing 1% SDS (w/v) and 3%
-mercaptoethanol at 65 °C for
20 min. The gel slices were washed twice in 50 mM Tris buffer,
pH 6.8, containing 0.1% SDS for 20 min at 25 °C and placed
horizontally in the top of the gel apparatus, perpendicular to their
original orientation. A 13% polyacrylamide gel was cast 1.0 cm below
the slices. Once the gel was polymerized, the glass plates were
loosened, the gel slices gently pushed down against the resolving gel,
and the plates retightened. A 0.5% agarose solution was added around
the gel slices to seal any discontinuities with the new gel. The
reduced proteins were then electrophoresed. The polyacrylamide gels
were subsequently processed for silver-staining or Western analysis.Polyclonal Antibody Production and Western Blot
Analysis
The cDNA derived from the VMA1 gene, encoding the
67-kDa subunit of the N. crassa vacuolar ATPase (Bowman et
al., 1988) was digested with BglII and BamHI
restriction enzymes. This generated a 1440-base pair fragment which
encoded amino acid residues 18-500 of this 589-residue
polypeptide. The cDNA fragment was inserted into the pATH1 vector (a
generous gift from C. Yanofsky, Stanford University) behind a 1008-base
pair fragment of the inducible Escherichia coli trp promoter
(encoding a 37-kDa NH
-terminal fragment of the trpE
protein). After transformation into E. coli strain AB1899 the
overexpressed polypeptide from an induced culture was purified by gel
electrophoresis, excised, and homogenized in Freund's complete
adjuvant. A New Zealand White rabbit was inoculated with 150 µg of
the fusion protein. After three subsequent booster injections using the
same amount of antigen in Freund's incomplete adjuvant, an
antibody of high titer and specificity against the VMA1 protein was
isolated.
SO
. We observed only
a modest 5-15% stimulation of ATPase activity (data not shown).
The K
for MgATP was also measured and found to be
essentially the same in the absence (0.71 mM) and presence
(0.56 mM) of 100 mM sulfite (Fig. 1). Because
the effect of sulfite is sometimes pH-dependent (Inatomi, 1986;
Schobert and Lanyi, 1989), we measured the activity of the ATPase as a
function of pH in the absence and presence of 100 mM sulfite.
As shown in Fig. 2, sulfite did not shift the pH optimum but
appeared to broaden the pH dependence. Only a 10% stimulation of
activity was observed at the pH optimum, but the enzyme was more
active, perhaps more stable, in Na
SO
at the
extremes of its pH range.
and varying amounts of ATP as indicated. 100
mM Na
SO
was either present (closed
squares) or absent (open
circles).
SO
was either
absent (closed squares) or present (open
circles).
alone slightly accelerated the loss of
activity, MgADP had the same protective effect as MgATP, and ADP had
the same protective effect as ATP. An even better stabilizing agent
than the nucleotides, however, was sodium sulfite (Fig. 3). Even
in the absence of ATP the enzyme retained 65% of ATPase activity after
36 h if sulfite was present. We measured the protective effects at
different sulfite concentrations and found that 100 mM was
optimal in our experimental conditions (data not shown).
ATP. 100 mM Na
SO
was either absent or present (open and closed
symbols, respectively). Membrane aliquots from the various
treatments were assayed for ATPase activity at 6-h intervals. The
activity of the controls at time = 0 was set at
100%.
SeO
), thiophosphate
(Na
SPO
), and dithionite
(Na
S
O
) demonstrated protective
effects, the latter being nearly as effective as sulfite, but at 0.1
the concentration. Even reduced glutathione at high concentrations (10
mM) partially prevented loss of ATPase activity. Oxidized
glutathione had no effect on activity (data not shown).
g. The membrane pellets were resuspended to their
original volume with 1 mM EGTA (pH 7.4) and assayed for ATPase
activity. The data represent the activity of the membranes after the 12
h incubation relative to the initial activity of the untreated
membranes.
g. The membrane pellets
were immediately resuspended to original volume with 1 mM EGTA
(pH 7.4) and assayed for ATPase activity.
for 45 min at 25 °C with the indicated
amounts of Na
SO
. Samples were centrifuged for
15 min in a microfuge at 16,000 g. The membrane
pellets were immediately resuspended to original volume with 1 mM EGTA (pH 7.4) and assayed for ATPase activity. The data represent
the activity of the membranes after one h of treatment relative to the
initial activity of the untreated membranes. The supernatants from the
various treatments were examined by polyacrylamide gel electrophoresis.
Release of the peripheral subunits of the ATPase (the V1 sector) was analyzed by gel densitometry. Shown is the amount of
these subunits relative to the amount observed in the absence of
Na
SO
subunits (data not shown).
for ATP. We suggest that an inhibited form of
the vacuolar ATPase with tightly bound ADP does not significantly
accumulate in our assay conditions and that the effects of sulfite we
have observed have a different mechanistic basis.
-mercaptoethanol.
Although we have not attempted such experiments with the N. crassa ATPase such results are consistent with our model. The model
postulates that inhibition by nitrate and dissociation occur in
distinct steps to account for differences between the nitrate effect on
ATPase activity and nitrate-induced dissociation of peripheral subunits
(Arai et al., 1989; Kibak et al., 1993; Rea et
al., 1987). ATPases from different organisms may differ in the
rate at which oxidation is followed by dissociation.
and
subunits of F-type ATPases have fewer cysteines, in several cases none.
The residues targeted by nitrate might also be in other subunits of the
vacuolar ATPase. The 54-kDa subunit of the S. cerevisiae (Ho et al., 1993) has 6 cysteines, but the sequence for the
homologous subunit in other organisms has not yet been reported.
Subunit C has no cysteines common to S. cerevisiae and bovine
cells (Nelson et al., 1990; Beltrán et al., 1992). The sequence of subunit D has not yet been
reported for any vacuolar ATPase. Subunit E has no conserved cysteines
when S. cerevisiae (Foury, 1990), bovine (Hirsh et
al., 1988), Manduca sexta (Graf et al., 1994),
and N. crassa(
)sequences are compared. Among the
membrane associated subunits at least two cysteine residues are
conserved in the 40-kDa subunits from S. cerevisiae (Bauerle et al., 1993), bovine cells (Wang et al., 1988), and N. crassa. (
)(Because of a possible error in the
published bovine sequence, discussed in Bauerle et al.(1993),
there is probably a third conserved cysteine near the N terminus of
this subunit.)
)
)
)
We thank Henrik Kibak and Lincoln Taiz for helpful
discussions, and Nora Vázquez-Laslop for
assistance in makingantibody. We also thank Emma Jean Bowman for advice
on both the experiments and the manuscript.
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
![]()
CiteULike
Complore
Connotea
Del.icio.us
Digg
Reddit
Technorati What's this?
This article has been cited by other articles:
![]() |
A. Brux, T.-Y. Liu, M. Krebs, Y.-D. Stierhof, J. U. Lohmann, O. Miersch, C. Wasternack, and K. Schumacher Reduced V-ATPase Activity in the trans-Golgi Network Causes Oxylipin-Dependent Hypocotyl Growth Inhibition in Arabidopsis PLANT CELL, April 1, 2008; 20(4): 1088 - 1100. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. A. Owegi, D. L. Pappas, M. W. Finch Jr.,, S. A. Bilbo, C. A. Resendiz, L. J. Jacquemin, A. Warrier, J. D. Trombley, K. M. McCulloch, K. L. M. Margalef, et al. Identification of a Domain in the Vo Subunit d That Is Critical for Coupling of the Yeast Vacuolar Proton-translocating ATPase J. Biol. Chem., October 6, 2006; 281(40): 30001 - 30014. [Abstract] [Full Text] [PDF] |
||||
![]() |
X.-H. Weng, M. Huss, H. Wieczorek, and K. W. Beyenbach The V-type H+-ATPase in Malpighian tubules of Aedes aegypti: localization and activity J. Exp. Biol., July 1, 2003; 206(13): 2211 - 2219. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. F. Rizzo, U. Coskun, M. Radermacher, T. Ruiz, A. Armbruster, and G. Gruber Resolution of the V1 ATPase from Manduca sexta into Subcomplexes and Visualization of an ATPase-active A3B3EG Complex by Electron Microscopy J. Biol. Chem., January 3, 2003; 278(1): 270 - 275. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. Gruber, H. Wieczorek, W. R. Harvey, and V. Muller Structure-function relationships of A-, F- and V-ATPases J. Exp. Biol., January 8, 2001; 204(15): 2597 - 2605. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Wilson, P Laurent, B. Tufts, D. Benos, M Donowitz, A. Vogl, and D. Randall NaCl uptake by the branchial epithelium in freshwater teleost fish: an immunological approach to ion-transport protein localization J. Exp. Biol., January 8, 2000; 203(15): 2279 - 2296. [Abstract] [PDF] |
||||
![]() |
E. Bowman and B. Bowman Cellular role of the V-ATPase in Neurospora crassa: analysis of mutants resistant to concanamycin or lacking the catalytic subunit A J. Exp. Biol., January 1, 2000; 203(1): 97 - 106. [Abstract] |
||||
![]() |
H Wieczorek, G Grber, W. Harvey, M Huss, H Merzendorfer, and W Zeiske Structure and regulation of insect plasma membrane H(+)V-ATPase J. Exp. Biol., January 1, 2000; 203(1): 127 - 135. [Abstract] |
||||
![]() |
C. Landolt-Marticorena, W. H. Kahr, P. Zawarinski, J. Correa, and M. F. Manolson Substrate- and Inhibitor-induced Conformational Changes in the Yeast V-ATPase Provide Evidence for Communication between the Catalytic and Proton-translocating Sectors J. Biol. Chem., September 10, 1999; 274(37): 26057 - 26064. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Forgac Structure and Properties of the Vacuolar (H+)-ATPases J. Biol. Chem., May 7, 1999; 274(19): 12951 - 12954. [Full Text] [PDF] |
||||
![]() |
M. L. Muller, M. Jensen, and L. Taiz The Vacuolar H+-ATPase of Lemon Fruits Is Regulated by Variable H+/ATP Coupling and Slip J. Biol. Chem., April 16, 1999; 274(16): 10706 - 10716. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Forgac The Vacuolar H+-ATPase of Clathrin-coated Vesicles Is Reversibly Inhibited by S-Nitrosoglutathione J. Biol. Chem., January 15, 1999; 274(3): 1301 - 1305. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. E. Oluwatosin and P. M. Kane Mutations in the CYS4 Gene Provide Evidence for Regulation of the Yeast Vacuolar H+-ATPase by Oxidation and Reduction in Vivo J. Biol. Chem., October 31, 1997; 272(44): 28149 - 28157. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. J. Tomashek, B. S. Garrison, and D. J. Klionsky Reconstitution in Vitro of the V1 Complex from the Yeast Vacuolar Proton-translocating ATPase. ASSEMBLY RECAPITULATES MECHANISM J. Biol. Chem., June 27, 1997; 272(26): 16618 - 16623. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Drukarch, C. A. M. Jongenelen, E. Schepens, C. H. Langeveld, and J. C. Stoof Glutathione Is Involved in the Granular Storage of Dopamine in Rat PC12 Pheochromocytoma Cells: Implications for the Pathogenesis of Parkinson's Disease J. Neurosci., October 1, 1996; 16(19): 6038 - 6045. [Abstract] [Full Text] [PDF] |
||||
![]() |