|
Volume 270,
Number 44,
Issue of November 3, 1995 pp. 26159-26167
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Mycobacterium
tuberculosis Chaperonin 10 Forms Stable Tetrameric and Heptameric
Structures
IMPLICATIONS FOR ITS DIVERSE BIOLOGICAL ACTIVITIES (*)
(Received for publication, April 10, 1995; and in revised form, July 31, 1995)
Gianluca
Fossati
,
Pierluigi
Lucietto
,
Paola
Giuliani
,
Anthony R.
Coates
(1),
Steve
Harding
(2),
Helmut
Cölfen
(2), (§),
Giuseppe
Legname
,
Edith
Chan
,
Andrea
Zaliani
,
Paolo
Mascagni (¶)
From the
(1)Department of Chemistry, Italfarmaco Research Centre,
Via Lavoratori 54, Cinisello Balsamo, 20092 Milan, Italy, the Department of Medical Microbiology, St. George's
Hospital Medical School, London SW17 0RE, United Kingdom, and the
(2)Department of Applied Biochemistry and Food
Science, University of Nottingham, Nottingham LE12 5RD, United Kingdom
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
REFERENCES
ABSTRACT
The chaperonin activity of sequence-related chaperonin 10
proteins requires their aggregation into heptameric structures. We
describe size-exclusion chromatography and ultracentrifugation studies
that reveal that while Escherichia coli chaperonin 10 exists
as a heptamer, the Mycobacterium tuberculosis chaperonin 10 is
tetrameric in dilute solutions and in whole M. tuberculosis lysate. At high protein concentration and in the presence of
saturating amounts of divalent ions, the protein is heptameric. Human
chaperonin 10 is predominantly heptameric, although smaller oligomers
were detected. These differences in structural assembly between species
may explain differences in biological activity such as antigenicity. Using C-terminal and N-terminal fragments, sequence 1-25 was
identified as indispensable for aggregation. CD spectroscopy studies
revealed that (i) a minimum at 202-204 nm correlates with
aggregation and characterizes not only the spectrum of the
mycobacterial protein, but also those of E. coli and human
chaperonin 10 proteins; (ii) the interactions between subunits are of
the hydrophobic type; and (iii) the anti-parallel -pleated sheet
is the main secondary structure element of subunits in both tetrameric
and heptameric proteins.
INTRODUCTION
The sequence-related chaperonin 10 (cpn10, ( )hsp10,
or 10-kDa antigen) class of proteins assists the noncovalent assembly
of other protein-containing structures in vivo(1) .
This biological activity requires aggregation of cpn10 into a
heptameric structure(2) . In addition to this activity, several
cpn10 proteins such as the Mycobacterium tuberculosis and Mycobacterium leprae molecules are among the most potent
stimulators of the immune system
known(3, 4, 5, 6, 7, 8) .
For example, in a leprosy patient, one in three T lymphocytes that
respond to M. leprae may react to M. leprae cpn10(4) . Similarly, M. tuberculosis cpn10
induces T cell proliferation in healthy tuberculin reactors to an
extent that is greater than that elicited by any other mycobacterial
protein(5) . Intriguingly, there is a dramatic difference in
antigenicity between cpn10 proteins from different species: human cpn10
and Escherichia coli cpn10, for instance, are very poor
immunogens(9) . In addition to antigenicity, chaperonins, at
low concentrations, have other biological properties. For example,
several micrograms or less of mycobacterial chaperonins/milliliter will
immunize animals, stimulate T lymphocyte proliferation in
vitro, and induce cytokine secretion from a human monocyte line
and from human
monocytes(3, 4, 5, 6, 7, 8, 10, 11) .
They also induce apoptosis of human p19 cells. ( )Furthermore, there is evidence to suggest that human cpn10
may be involved in control over cell growth and
development(9) . These data indicate that cpn10 proteins have
several distinct biological activities, namely as molecular chaperones
and non-chaperone activities. This study concerns the aggregation
behavior of the M. tuberculosis cpn10 protein under a variety
of different experimental conditions, in particular, low concentrations
of cpn10 at which non-chaperone activities occur. Aggregation of both
the full-length protein and truncated cpn10 peptides was examined.
Furthermore, the secondary structure of the molecule was analyzed by CD
spectroscopy. Most of the work was carried out using chemically
synthesized full-length protein including the N-terminal and C-terminal
fragments. Recombinant material was used for comparison. Preliminary
accounts on both the synthesis of the protein and its structure have
been reported previously(13, 14) . Here, we
demonstrate that M. tuberculosis cpn10 exists, surprisingly,
as a tetrameric aggregate with -type structure in dilute solutions
and in whole M. tuberculosis lysate. In the presence of a
large molar excess of divalent ions, the protein has the expected
heptameric structure and, together with cpn60, is functional in a
refolding assay. In contrast, we show that E. coli cpn10 is
heptameric under all conditions tested, while human cpn10 is
predominately found as a heptamer, although dissociation into smaller
oligomers takes place under certain solution conditions. These
differences in structural assembly between species may help to explain
differences in biological activity such as antigenicity.
MATERIALS AND METHODS
Chemical Synthesis of M. tuberculosis cpn10 and
FragmentsThe synthesis and purification of the M.
tuberculosis protein and C-terminal and N-terminal fragments were
performed by the solid-phase stepwise approach using t-butoxycarbonyl chemistry and according to a strategy that
uses chromatographic probes for the selective purification of synthetic
proteins(15, 16, 17) . ( )The
details of this strategy applied to M. tuberculosis cpn10 and
its fragments will be described elsewhere. ( )The material
was, however, homogeneous by reversed-phase HPLC and had the correct M (peptide 1-99, 10,674; peptide 1-58,
6213; peptide 59-99, 4477; peptide 51-99, 5480; and peptide
26-99, 8007), sequence, and amino acid composition.
M. tuberculosis LysateNonviable desiccated M.
tuberculosis H37 RA (Difco) was used as source of naturally
expressed M. tuberculosis cpn10. 200 mg of desiccated material
was resuspended in 50 mM Tris, 150 mM KCl, 5
mM MgSO , 2.5 mM phenylmethylsulfonyl
fluoride, 1 mM aprotinin, pH 7.4, and 50 mg of glass beads
(150-210 µm; Sigma) were added. Protein extraction was
performed by sonication of the suspension on ice (3 10 min,
with a 1-min interval in between). After sonication, the suspension was
centrifuged for 10 min at 13,000 rpm and 4 °C, and the supernatant
was analyzed for protein content using the bicinchoninic acid protein
assay (Pierce). An aliquot of the extract (corresponding to 70 µg
of protein) was separated on a Superdex 75 SEC column using 50 mM Tris, 150 mM KCl, 1 mM MgSO as a
buffer, and fractions of 0.5 ml each were collected. Fractions of 100
µl each were coated on a 96-well microtiter plate (Nunc ImmunoPlate
MaxiSorp), and detection of M. tuberculosis cpn10 was
performed using a monoclonal antibody (SA12) specific for mycobacterial
cpn10 (27) following standard enzyme-linked immunosorbent assay
techniques.
Recombinant M. tuberculosis, E. coli, and Human cpn10
ProteinsE. coli cpn10 was purchased from Boehringer
Mannheim and was used without further purification. Human cpn10 was
expressed in E. coli and purified by reversed-phase HPLC as
previously reported(19) . M. tuberculosis was
expressed either in baculovirus and purified by isoelectrofocusing in
solution (20) or in E. coli. The details of expression
in E. coli and purification will be described elsewhere.
Briefly, for expression, the T7 expression system was used. Polymerase
chain reaction amplification was performed using a pUC18 plasmid that
contains the M. tuberculosis groESL-like operon as template.
The resulting plasmid coding for M. tuberculosis cpn10 was
transformed into BL21(DE3). Expression was carried out at 37 °C in
M9ZB medium. Cells were harvested by centrifugation, resuspended in
lysis buffer (50 mM Tris-HCl, 2 mM EDTA, pH 8.0), and
centrifuged again. The pH of the supernatant was adjusted to 2.2 with
trifluoroacetic acid, the suspension was centrifuged, and the resulting
supernatant was applied directly to a semipreparative reversed-phase
HPLC column (Vydac C , 9 25 mm). The protein eluted
at a concentration of acetonitrile N of 40%. Fractions containing
homogeneous material were pooled and lyophilized. The purity of the
protein thus obtained was >95% as judged by both analytical HPLC and
capillary electrophoresis. The entire expression and purification
protocol yielded 100 mg of pure (>95%) protein/liter of
expression medium.
Size-exclusion ChromatographyGel filtration
experiments were conducted on a Superdex 75 column connected to a fast
protein liquid chromatography instrument (Pharmacia) and a Jasco 875-UV
detector. The column was calibrated using a mixture of globular
standard proteins (Pharmacia Biotech low molecular weight gel
filtration calibration kit) whose retention times were not affected by
the different buffers used. Samples were eluted at 0.5 ml/min, and
column effluent was monitored at both 280 and 214 nm.
UltracentrifugationA Beckman Optima XL-A
analytical ultracentrifuge equipped with modern scanning absorption
optics was used in all investigations. Sedimentation equilibrium
experiments were performed at 20,000 and 30,000 rpm, scanning at 220,
230, and 280 nm and using the buffer as reference solvent at a
temperature of 20 °C. For the experiments, six-channel 12-mm Kel-F
(Beckman Instruments) ``Yphantis cells'' (21, 22) were used. The concentrations employed were
0.05, 0.2, and 1 mg/ml depending on the sample. The sedimentation
equilibrium data were evaluated using the MSTARA program, which is
described elsewhere(23) . The solvent densities needed for the
evaluation were determined at 20 °C using an Anton Paar Model DMA
O2C precision density meter calibrated with CsCl
solutions(24) . For each density value, 10 consistent readings
were obtained to minimize the experimental error. The partial specific
volumes of the chaperones were calculated from their amino acid
composition using the consensus formula given by Perkins(25) .
CD SpectroscopyCD measurements were performed on
a Jasco J-600 spectropolarimeter calibrated with d-10-camphorsulfonic acid. Spectra, unless otherwise
specified, were recorded in 0.1 M phosphate buffer at 22
°C in a cuvette with a 0.1-cm path length. Peptide and protein
concentrations were kept at 0.1 mg/ml in all experiments. Spectra were
the average of eight scans at 50 nm/min, each with a bandwidth set at 2
nm, and were base line-corrected by subtracting the corresponding
blank. Although spectra were recorded in the 190-240 nm range,
data below 195 nm were not always reliable due to strong
interferences of the solvent (0.1 M phosphate) at these
wavelengths. The observed ellipticity was converted to mean residue
weight ellipticity
([ ]/(degrees cm dmol )).
Smoothing of the curves, using a mild function that increased the
signal-to-noise ratio without altering the shape of spectra, was
applied using the Jasco J-700 program. Superimposition of smoothed
spectra with the raw curve was performed each time to check for
artifacts.pH titration experiments were performed by preparing a
stock solution of peptide (2 mg/ml in either distilled water or
slightly acidified water) and mixing aliquots of this solution with
sufficient phosphate solution buffered at the pH of choice so as to
yield a final solution containing 0.1 mg/ml peptide in 0.1 M phosphate. The exact pH was then monitored with a pH-meter
equipped with a microelectrode. Prior to use, the final solution was
equilibrated for 1 h at 22 °C in the CD chamber. During temperature
studies, the cuvette containing the peptide solution and the CD chamber
were equilibrated for 1 h prior to collection of data.
RESULTS
Fig. 1shows the sequences of the three proteins
considered in this work. Two of the M. tuberculosis cpn10
fragments (i.e. peptides 1-58 and 59-99) were
selected because they include or exclude, respectively, a sequence
(amino acids 46-59) predicted to be a loop region (Fig. 1). This loop contains the M. tuberculosis cpn10
monoclonal antibody (SA12)-binding
site(5, 26, 27) . SA12 is, within the cpn10
family, specific for the mycobacterial molecule. There were no special
reasons for the choice of the other two fragments other than the fact
that peptide 51-99 cuts almost in the middle the loop
antibody-binding region. This could provide information about which
residues are necessary for antibody recognition. Peptide 26-99
begins with a conserved Gly, which follows a long sequence predicted to
be another loop region (Fig. 1).
Figure 1:
Alignment and secondary structure
prediction of the M. tuberculosis (mt), E. coli (ec), and human (hu) cpn10 proteins discussed
under ``Results.'' Numbering of residues refers to the M.
tuberculosis protein. Footnote a, shown is the cpn10
motif described in the SWISS-PROT data base (release 30.0, October
1994). h, hydrophobic residues; q, mostly charged
residues (Lys, Arg, Glu) or Gln. Footnote b, the secondary
structure composition of cpn10 proteins was predicted by first aligning
27 sequences of cpn10 proteins and then considering the secondary
structure of each section (separated by gaps) using two different
algorithms: Chou-Fasman (12) and GORII (18) . II
Str.Pred., secondary structure prediction; h,
-helix; b, -strand; t, turn; l,
loop. Boldface residues denote
identity.
Chemical SynthesisPreliminary accounts on the synthesis of M. tuberculosis cpn10 have been described previously(13, 14) ,
while a complete account of the details will be reported
elsewhere. Here it should be noted that we have developed
highly effective protocols for stepwise solid-phase synthesis of
proteins and their purification. These protocols require (i) removal of
deletion sequences by capping unreacted amino groups after each
coupling step; (ii) addition of a chromatographic probe with enhanced
lipophilic character to the last residue of the sequence; (iii)
separation by reversed-phase HPLC of the probe-protein adduct from
truncated sequences; and finally, (iv) removal of the probe by mild
basic treatments(15, 16, 17) . The proteins thus recovered have a degree of purity generally
>85%, as determined by a combination of mass spectrometry, HPLC, and
capillary electrophoresis and are further purified by
either ion-exchange chromatography or isoelectrofocusing techniques. The M. tuberculosis protein was synthesized and purified
according to these protocols. The final purified product had the
correct mass, amino acid composition, and sequence. Furthermore, samples of recombinant material that became
available during the final stages of this study were found to have the
same physicochemical characteristics as synthetic M. tuberculosis protein.
Aggregation StudiesThe synthetic protein and fragments were first analyzed by
SEC for their ability to aggregate. In PBS, pH 7.4, the protein had an
apparent molecular mass of 40 kDa, which corresponded to an
aggregation state of 4 ( Fig. 2and Table 1). This was
quite surprising since all cpn10 proteins reported to date have been
described as heptamers. Indeed, samples of recombinant human and E.
coli cpn10 proteins were found to be heptameric by the same
technique (Table 1). The synthetic origin of the protein was not
responsible for this unexpected result since a sample of purified
recombinant material had an identical SEC profile (Fig. 3).
Furthermore, enzyme-linked immunosorbent assays using the M.
tuberculosis cpn10-specific monoclonal antibody SA12 and SEC
fractions of whole Mycobacterium lysate identified only one
protein whose molecular mass corresponded to that of tetrameric cpn10 (Fig. 3).
Figure 2:
Size-exclusion chromatography of M.
tuberculosis cpn10 (0.2 mg/ml) in PBS, pH 7.4, and in PBS plus 7
mM Mg . The addition of the latter changed
the aggregation state of the protein from 4 to 7. BSA, bovine
serum albumin; OVA, ovalbumin.
Figure 3:
Enzyme-linked immunosorbent assays on
size-exclusion chromatography fractions of recombinant M.
tuberculosis cpn10 ( ) and M. tuberculosis lysate
( ). Fractions (0.5 ml) were collected every minute after 13 min
from injection. 100 µl of each fraction were coated on a 96-well
microtiter plate, and the presence of M. tuberculosis cpn10
was revealed with the M. tuberculosis cpn10 monoclonal
antibody SA12 using standard enzyme-linked immunosorbent assay
techniques. BSA, bovine serum albumin; OVA,
ovalbumin.
The two larger fragments, i.e. peptides
26-99 and 51-99, also had retention times that, in a
calibration curve, corresponded to an aggregation state of 4. A similar
conclusion was reached when peptide 1-58 was tested, while
peptide 59-99 eluted as either a trimer or dimer. The apparent
molecular mass of the polypeptides did not change in the pH range
5-8.5, at which a calibration curve was still reliable using
standard proteins (data not shown). Given the unexpected nature of
the oligomeric state of the protein, a second independent measurement
of the aggregation properties of the cpn10 molecule was carried out by
analytical ultracentrifugation (AUC). This confirmed that in PBS, pH
7.4, M. tuberculosis cpn10 was a tetramer (Table 1).
However, the fragments gave the following results. At concentrations
varying between 0.05 and 1 mg/ml, peptide 1-58 was always a
dimer, while all other C-terminal fragments were, in the same
concentration range, monomeric (Table 1). Given that, in some
cases, the results from the two techniques (SEC and AUC) differed, and
due to the superior reliability of AUC in the determination of the
molecular mass, the values obtained from ultracentrifugation were taken
as representative of the aggregation state of the polypeptides. To
explore the possibility that the M. tuberculosis cpn10 protein
could adopt a heptameric form, a binding test was carried out with
recombinant E. coli cpn60 (GroEL). Thus, it is well
established that in order to exert its activity, the co-chaperone cpn10
protein must bind to cpn60 in the presence of Mg /ATP
(see, for example, (28) ). Furthermore, electron microscopy
studies have shown that both proteins share a 7-fold axis of symmetry
when in the complexed form (see, for example, (29) ). Indeed, M. tuberculosis cpn10 bound to GroEL, and the complex thus
obtained was a functional one in a refolding assay. These
data suggest either that GroEL acts as a chaperone for the cpn10
protein by changing its aggregation state from 4 to 7 or that the
smaller protein binds to GroEL in a tetrameric state. Alternatively,
the transition between the two different aggregation states is due to
the presence in the buffer of either ATP or Mg ions
or both. This hypothesis was verified by additional SEC experiments in
the presence of Mg /ATP. Magnesium ions alone were
sufficient to change the aggregation state of cpn10 to 7 ( Fig. 2and Table 1). Ultracentrifugation studies conducted
under the same conditions confirmed this conclusion (Table 1). A
similar, although not quite so dramatic effect has been recently
described for the cpn60 protein. Cross-linking of the native GroEL
tetradecamer is accelerated by saturating amounts (10 mM) of
Mg ions(30) . Mg could
be substituted with Mn and Ca ions
in inducing the change to heptamers, while monovalent ions, such as
K , were ineffective (Table 1). In the case of
Zn ions, a heptameric species and small amounts of
larger aggregates were obtained (Table 1). As to the shorter
fragments, their aggregation states were not influenced by the addition
of divalent ions, their retention times being the same in the presence
or absence of Mg (data not shown). To evaluate
whether parameters other than the divalent cations could influence the
aggregation of the protein, additional SEC and AUC studies were carried
out. Protein concentration and type of buffer were examined. Also,
solution pH was studied (by ultracentrifugation only) because the CD
results (see below) indicated that both the protein and its C-terminal
fragments undergo a conformational change at acidic pH values. When
the protein concentration was kept between 0.1 and 0.2 mg/ml, an
aggregation state of 4 was found irrespective of the buffer used (i.e. 0.1 mM Tris with or without 10 mM KCl
and PBS without Mg /Ca ) (Table 1). The addition of Mg converted the
protein to a heptamer in all of these solvents. When the concentration
of the protein was increased to 1 mg/ml and the solvent was 0.1 M phosphate, the heptamer was the most abundant species in solution
( 95%) even in the absence of Mg . Interestingly,
lowering the phosphate concentration to that of PBS (i.e. 10 mM) while maintaining the protein concentration
at 1 mg/ml gave aggregation species that ranged from that of a heptamer
to either a dimer or trimer (Fig. 4A and Table 1).
Finally, at acidic pH and in 10 mM phosphate buffer, the
protein was still a tetramer (Table 1).
Figure 4:
Size-exclusion chromatography of M.
tuberculosis cpn10 (1 mg/ml) in PBS, pH 7.4 (top trace),
and human cpn10 (0.2 mg/ml) in 0.1 M Tris buffer, pH 7.4 (bottom trace), illustrating the presence of different
oligomeric structures.
Similar studies
conducted on recombinant E. coli cpn10 (also known as GroES)
showed that the protein existed in solution only as a heptamer (Table 1). Human cpn10 had instead a behavior intermediate
between that of GroES and that of M. tuberculosis cpn10 since
it was heptameric in all cases tested, except in a 0.1 M Tris
solution, pH 7.4, where it was a mixture of various aggregation states (Fig. 4B), and in the same solution plus 10 mM KCl, where it was mainly tetrameric (Table 1). Finally,
peptides 26-99 and 51-99, which were not influenced by all
the parameters discussed above (data not shown), became dimers at pH
3.4, while peptide 59-99 was still monomeric at a similar pH (Table 1).
CD SpectroscopyThe fragments and the M. tuberculosis cpn10 protein
(0.1 mg/ml) were initially studied in phosphate buffer (0.1 M)
at neutral pH (Fig. 5A). With the exception of peptide
59-99, which had minima at about 215 and 202 nm, the other
molecules had either an intense band at 198 nm and a shoulder at
220 nm (peptides 51-99 and 26-99) or a minimum at 203
nm and shoulders at about 198 and 217 nm (full-length protein).
Furthermore, the intensities of the spectra decreased on going from
peptide 51-99 to protein. Peptide 1-58, in addition to the
intense band at 198 nm, had a shoulder between 225 and 230 nm (Fig. 5A). A more detailed study on the CD structure of
these peptides was then carried out, beginning with the shortest
sequence.
Figure 5:
CD spectra of M. tuberculosis cpn10 and fragments. A, M. tuberculosis cpn10
and C-terminal fragments (0.1 mg/ml) in 0.1 M phosphate
buffer, pH 7.4. The spectrum of peptide 1-58 is shown in the inset. The spectra of the C-terminal fragments had different
intensities (see ``Results,'' the other panels of this
figure, and Fig. 7). Therefore, to enable their visual
comparison, the spectra of peptides 59-99 and 26-99 and the
full-length protein were multiplied by factors of 6, 12, and 300,
respectively. B, CD curves of peptide 59-99 at different
pH values. All fragments and the full-length protein were scarcely
soluble in the approximate pH range 4-5.5. Spectra at these pH
values were therefore not obtained. C, as in B, but
for peptide 51-99. D, as in B and C,
but for peptide 26-99. WL,
wavelength.
Figure 7:
CD spectra of M. tuberculosis (Mt) cpn10 (0.1 mg/ml) in 0.1 M phosphate
buffer. A, the protein at different pH values; B,
spectra recorded in the absence and presence of Mg (7
mM); C, temperature studies carried out between 0 and
30 °C; D, protein in a 0.1 M phosphate/MeOH
(35:65) mixture. WL, wavelength.
Peptide 59-99The CD spectrum of this peptide was
the only one of those shown in Fig. 5A with an
apparently more defined secondary structure composition. CD spectra
with minima between 215 and 220 nm have been attributed to proteins
with a high content of anti-parallel -sheet and a nonsecondary
structure contribution from aromatic residues (this peptide contains
four tyrosines)(31) .pH titration experiments led to a
decrease of the contribution at 202 nm and an increase in the minimum
at 215 nm (Fig. 5B). At pH 3.0, where the peptide had a
stable structure (32) and was monomeric, there was only the
band at 215 nm.
Peptide 51-99The addition of only eight
residues to peptide 59-99 dramatically affected the CD spectrum
of the resulting 51-99 molecule. Thus, although a -sheet
contribution could still be deduced from the shoulder at 220 nm, the
main CD band was at 198 nm (Fig. 5, A and C).
Changing the solution pH led to a blue shift of the former to 217 nm
and an increase in its intensity, which became maximal at pH 3.5. At
this pH, a minimum at 204 nm replaced that at 198 nm (Fig. 5C). Notice that the presence of the latter could
not be excluded since the 204 nm band was very broad. Under these
conditions of solvent composition and pH, the peptide was a dimer (see
above and Table 1).
Peptide 26-99A trend similar to that found
for peptide 51-99 applied to peptide 26-99, which was
monomeric and dimeric at neutral and acidic pH, respectively. Thus, the
broad and intense signal centered at 198 nm in the spectrum at pH 7.4
moved, at pH 3.4, to 203 nm, while the shoulder at 220 nm became
more intense and shifted to 215 nm (Fig. 5D). An
isosbestic point at 209.5 nm, essentially in the same position as that
of peptide 59-99, characterized the pH titration experiment.
Peptide 1-58Unlike the other fragments, the
region of the protein corresponding to its N-terminal half was dimeric
at neutral pH and at a wide range of peptide concentrations (i.e. 0.05-1 mg/ml) (Table 1). The spectrum at pH 7.4 had an
intense band at 198 nm and a shoulder between 225 and 230 nm (Fig. 5A) and did not change upon varying the solution
pH (data not shown).
Peptide 1-99As discussed above, the M.
tuberculosis protein adopts, in the absence of divalent cations, a
tetrameric structure unseen in the case of other members of this class
of proteins. CD studies were therefore conducted not only as a function
of the solution pH, but also in the presence of Mg and as a function of temperature and solvent composition.The
spectrum of the M. tuberculosis protein (Fig. 5A) was qualitatively similar to those of E.
coli cpn10, synthetic rat cpn10(14) , and recombinant
human cpn10. In particular, the E. coli protein had a minimum
at 202 nm and a shoulder at 197 nm, while human cpn10 (and rat cpn10;
the two proteins differ by one residue) had minima at 203 and 197 nm (Fig. 6). Thus, the band at 202-203 nm and the shoulder at
197-198 nm are characteristic of this class of proteins and
independent of their origin or aggregation state.
Figure 6:
CD spectra of E. coli and human (Hu) cpn10 proteins (0.1 mg/ml) in 0.1 M phosphate
buffer, pH 7.4. WL, wavelength.
The intensity of
the 204 nm band was, however, larger in the case of mammalian and E. coli proteins. The aggregation state was only partly
responsible for these changes since the spectrum of the M.
tuberculosis protein in its heptameric state (i.e. in the
presence of Mg ; see below) was still less intense
than those of the other two chaperonins. Possible explanations for this
difference could be either the presence in solution of small
concentrations of tetrameric M. tuberculosis cpn10 or a
difference balance, in the three proteins, of the residues/regions
contributing to the 204 nm band and the less intense 198 nm band. Lowering the pH of M. tuberculosis cpn10-containing
solutions induced a shift to 204 nm of the broad signal at 203 nm
similar to that seen for the C-terminal fragments, while the shoulder
at 217 nm became more pronounced (Fig. 7A). An
isosbestic point at 210.5 nm, together with invariance of the spectral
features between pH 4.5 and 2 (spectra in this pH range were
essentially identical; data not shown), indicated the existence of an
equilibrium between at least two species, one (or more) at pH 7.4 and a
second conformation stable in the pH 4.5 to 2 interval. Qualitatively, the addition of Mg , which
aggregation studies had shown to induce a transition from tetramers to
heptamers, led to the same changes (i.e. shift of the 203 nm
band to 204 nm and increase in the intensity of the 217 nm shoulder)
observed during pH titration (Fig. 7B). In particular,
virtually no changes were observed when 1 or <1 eq (C 0.01 mM)
of magnesium ions/protein subunit was added, while a continuous change
in the shape of the spectrum was obtained upon adding 5 eq of
Mg (0.05 mM) and up to a total magnesium
concentration of 5 mM. These results suggested that there
was no stoichiometric binding of the ion to the cpn10 protein. Modulation of the intensities of the minima at 200 nm also
occurred during temperature studies. Thus, at 0 °C, the spectrum
had two almost equally intense bands, at 199 and 203 nm, respectively,
while raising the temperature to 30 °C led to a sharpening of the
latter, which moved to 204 nm. At this temperature, the 198 nm
contribution was reduced considerably (Fig. 7C). Finally, the addition of MeOH to aqueous solutions of M.
tuberculosis cpn10 led to a CD spectrum resembling that of an
all- -structure (Fig. 7D)(31) . This
suggested that the ability to form anti-parallel -strands shown by
the C-terminal fragments was maintained in the full-length protein.
DISCUSSION
The work that we describe here provides, for the first time,
CD data on the secondary structure of M. tuberculosis cpn10,
leads to a hypothesis for the tertiary structure, and demonstrates,
surprisingly, that the main quaternary unit is a tetramer. The
following is a detailed discussion of the main findings.
Aggregationcpn10 proteins are known to assemble into
heptameric structures and, in the presence of Mg /ATP,
form a complex with cpn60 tetradecamers that functions as a molecular
chaperone. Electron microscopy studies have shown that both cpn10 and
cpn60 share a 7-fold axis of symmetry in the complexed form (see, for
example, (29) ). Prior to the present work, these structures
were reported to be quite stable(33) . The results of SEC and
AUC that we reported here confirm that E. coli and human cpn10
heptamers are stable under a wide variety of conditions, but,
surprisingly, M. tuberculosis cpn10 is predominantly a
tetramer under most of the conditions tested. Heptameric species were
also obtained and shown to prevail in the presence of a large molar
excess of divalent ions (e.g. Mg , phosphate,
etc.). The role of the latter does not seem to involve secondary
structure changes deriving from an increase in the solution ionic
strength since replacing magnesium with potassium did not lead to
heptamerization. A possible explanation for these observations is that
divalent ions bring the surfaces of neighboring subunits into closer
contact with one another.The heptameric structure of M.
tuberculosis cpn10 acts as a molecular chaperone by binding to E. coli cpn60 and generating a complex functional in a
refolding assay. This shows that both M. tuberculosis cpn10
and E. coli cpn10 associate in the same way, i.e. as
heptamers with the cpn60 tetradecamer. What is the significance of
tetrameric M. tuberculosis cpn10? The first clue comes from
the our observation that M. tuberculosis cpn10 is tetrameric
in low protein and low divalent ionic solutions. This suggests that, in
nature, where a wide variety of conditions are present, the tetrameric
form may predominate. Indeed, this appears to be the case since M.
tuberculosis lysate has only one species that binds to anti-cpn10
monoclonal antibody and has the molecular mass of a tetramer. (It is
important to note that the monoclonal antibody used in this experiment
binds to both tetrameric and heptameric forms of M. tuberculosis chaperonin, ( )ruling out the existence of heptameric
species in mycobacterial lysate.) Is M. tuberculosis cpn10
biologically different from E. coli or mammalian cpn10? The
most obvious difference is immunogenicity. For example, M.
tuberculosis cpn10 is highly antigenic (3, 4, 5, 6, 7) while E. coli and mammalian cpn10 proteins are not(9) .
Furthermore, recent data suggest that M. tuberculosis cpn10
can stimulate monocytes(10) , macrophages(11) , and
synovial fibroblast-like cells. ( )In contrast, human and E. coli cpn10 proteins are poor immunogens(9) . It is
very difficult even to raise low affinity antibodies against human
cpn10 by repeated injections into animals(9) . Thus, the
different behavior toward aggregation shown by the cpn10 proteins
described in this work and, in particular, the ability of the M.
tuberculosis homologue to form stable tetrameric species may
explain the different biological activities of cpn10 proteins. The
data on aggregation using the protein's fragments suggest where,
in the sequence, the regions involved in subunit interactions are
approximately located. Thus, the behavior of peptides 1-58 and
26-99 and the full-length protein clearly indicates that sequence
1-25 is pivotal to aggregation to tetramers/heptamers.
Interestingly, the motif h+PLxD + hhhq, which spans
residues 6-15, has been proposed as the cpn10 protein fingerprint (Fig. 1). Here, it is proposed that this sequence is one of the
regions required for tetramer/heptamer formation. Another aggregation
region may be in the C-terminal half of the protein, although the data
are not sufficient for a more precise and unequivocal location.
Secondary StructureCentral to this discussion are
the minima at 198 and 203-204 nm. The first has been
traditionally attributed to the random coil structure. Spectra with
similar characteristics are also of proteins (e.g. soybean
trypsin inhibitor(34) ) whose crystal structure data show to be
made of anti-parallel pleated sheets that either are very much
distorted or contain very short irregular
strands(34, 35) .Here, a -contribution seemed
likely due to the structure of peptide 59-99, which, at low pH,
was assigned to a -sheet, and the existence in the spectra of all
other polypeptides of minima/shoulders at 215-220 nm.
Furthermore, the spectrum of M. tuberculosis cpn10 in
water/MeOH mixtures was that of proteins with a high -pleated
sheet content. The shoulder between 225 and 230 nm seen in the spectrum
of peptide 1-58 could also be interpreted as deriving from
-sheets since proteins with this fold and scarce aromatic
contribution exhibit a minimum in this region of the
spectrum(31) . A contribution of the random coil type to the
structure of the protein and fragments was also probable since the
H- chemical shift of residues contained in sequence 17-32 of
GroES (sequence 19-34 in M. tuberculosis cpn10) has been
shown to be virtually identical to those reported for random coil
peptides(36) . The minimum at 203-204 was more
difficult to interpret. Its assignment to an -helix seemed
unlikely due to the lack of the intense band at 222 nm. On the other
hand, the spectra of both polyproline II (37) and type I
-turns (Woody's class C spectrum) (38) have minima
in this wavelength range. A more positive assignment derived from
the observation that the main band of monomeric peptides 51-99
and 26-99 is at 198 nm while the minimum at 203-204 nm and
the shoulder at 215-217 nm characterize the spectra of dimeric
peptides 51-99 and 26-99 and tetrameric and heptameric
cpn10 proteins. Thus, based on these observations, it was concluded
that the 203-204 nm band correlates with aggregation, whereas the
opposite applies to the minimum at 198 nm. Whether these changes in
quaternary structure are accompanied by changes in secondary structure
(for instance, random coil to polyproline II-like structure) of parts
of the molecule or whether the 203-204 nm contribution derives
directly from the interactions between subunits cannot be concluded on
the basis of these data only. Changes in the intensities of the 198
and 203-204 nm minima were also observed during the temperature
studies of the full-length protein. In particular, the band at 198 nm
became more intense at 0 °C and vanished almost completely at 30
°C, where it was replaced by the 204 nm minimum. Since we had
correlated similar changes in secondary structure with changes in the
aggregation state and due to the fact that hydrophobic interactions are
weaker at low temperature(39) , we conclude that the oligomeric
structure of the protein is stabilized by hydrophobic interactions.
ConclusionsThe results presented here indicate
that for the M. tuberculosis cpn10 protein, an equilibrium
exists in solution between mainly tetrameric and heptameric forms,
which can be modulated by the protein concentration, the addition of
divalent cations, or the concentration of the phosphate ion. Monomeric
protein was never clearly detected. However, the need to explain
transition from tetramers to heptamers requires either the presence in
solution of small amounts of monomer or dissociation of tetramers into
at least one monomeric species and then reassembly into the larger
oligomer. Comparison of the aggregation behavior of the N-terminal and
C-terminal fragments with that of the full-length protein led to the
proposal of sequence 6-15 as one of the protein aggregation
motifs. This conclusion is in agreement with recent data that indicate
that in rat cpn10, the first 1-25 residues are essential for
heptamerization (17) .CD results were consistent with the
existence of aggregation equilibria. The latter could be followed by
monitoring the intensity of the minima at 198 and 203-204 nm. The
CD data also permitted us to conclude that the protein adopts a mainly
anti-parallel -fold consisting of two different regions, each
containing an anti-parallel -sheet: the first region comprises
residues 1-45, and the second comprises either peptide
55-99 or 59-99, with peptide 46-54 (46-58)
forming a large loop connecting the two sheets. The reasons for these
assumptions were (i) our data that indicate that peptide 59-99
has a spectroscopic and aggregation behavior different from that of the
other fragments; (ii) the assignment of peptide 46-58 to a loop
region containing the protein antibody-binding
site(5, 27) ; (iii) the ability of the protein to
adopt a mainly -fold, as shown by its CD spectrum in water/MeOH
mixtures; and (iv) the recently published indication that the nearly
complete crystal structure of GroES is made of identical subunits with
a mainly -barrel fold(40) . -Barrels are generally
formed by two -sheets that are joined together and packed against
each other. CD data were also used to conclude that the secondary
structure composition of subunits is similar in both stabilized
tetramers (i.e. the CD structure at acidic pH values) and
heptamers and that contact between subunits is mainly through
hydrophobic forces. Finally, the spectra of E. coli and human
cpn10 molecules were also characterized by minima at 198 and
202-204 nm. Thus, the latter, which was found to correlate with
aggregation, appears to be a general feature of cpn10 molecules.
FOOTNOTES
- *
- The costs of publication of this article
were defrayed in part by the payment of page charges. This article must
therefore by hereby marked ``advertisement'' in
accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
- §
- Present address: Max Planck Institute for
Colloid and Interface Research, Colloid Chemistry Department, Kantstr.
55, D-14513 Telfow, FRG.
- ¶
- To whom
correspondence should be addressed. Tel.: 39-2-64433090; Fax:
39-2-66011579.
- (
) - The abbreviations used are:
cpn10, chaperonin 10; HPLC, high performance liquid chromatography;
SEC, size-exclusion chromatography; PBS, phosphate-buffered saline;
AUC, analytical ultracentrifugation.
- (
) - G. Galli,
P. Ghezzi, P. Mascagni, F. Marcucci, and M. Fratelli, submitted for
publication.
- (
) - H. L. Ball and P. Mascagni,
submitted for publication.
- (
) - G. Fossati, G.
Legname, P. Lucietto, H. L. Ball, P. Giuliani, A. R. Coates, and P.
Mascagni, manuscript in preparation.
- (
) - F.
Marelli, P. Mascagni, and A. R. Coates, unpublished observation.
- (
) - G. Fossati, unpublished observation.
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