|
Volume 270,
Number 8,
Issue of February 24, 1995 pp. 3720-3725
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Ubiquitin in the Prokaryote Anabaena variabilis(*)
(Received for publication, September 26, 1994; and in revised form, November 23, 1994)
Jörg
Durner (§),
,
Peter
Böger (¶)
From the Lehrstuhl für Physiologie und
Biochemie der Pflanzen, Universität Konstanz,
D-78434 Konstanz, Germany
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS AND DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
The ubiquitin-dependent pathway for protein degradation has been
found to play a major role in controlling protein turnover in the cell.
Ubiquitin is one of the most conserved proteins yet identified, and up
until now it has been thought to be present only in eukaryotes and
archaebacteria. This is the first report on the detection and
purification of ubiquitin from a eubacterium, the cyanobacterium Anabaena variabilis. The purification procedure included a
heat denaturing step, fractionated ammonium sulfate precipitation, two
gel filtration runs (Sephadex G-50 and Superose 12), and a final
hydroxylapatite chromatography. Comparisons with bovine ubiquitin
showed a high similarity with respect to antigenicity to anti-ubiquitin
(bovine), molecular mass (M = 6,000),
isoelectric point (pI 6.5), and NH -terminal sequence. The
existence of ubiquitin in A. variabilis was confirmed by
Southern hybridization. In in vitro experiments both
cyanobacterial and bovine ubiquitin were covalently attached to several
target proteins from A. variabilis, respectively. Data are
presented which suggest ubiquitination of dinitrogenase reductase, the
Fe-protein subunit of nitrogenase. Our findings imply that
ubiquitination equivalent to the eukaryotic system is instrumental in
this organism.
INTRODUCTION
Intracellular protein degradation performs an array of essential
functions in the physiology, biochemistry, and development of all
organisms. Most important is its role in cellular
housekeeping(1, 2) . Abnormal proteins continually
arise by mutations, biosynthetic errors, spontaneous denaturation, and
free radical or temperature-induced damage. To avoid toxic levels in
the cell a fast removal of these aberrant proteins is mandatory. Both
eukaryotes and prokaryotes have proteolytic machineries that
specifically degrade abnormal proteins(3, 4) . A
proteolytic pathway that plays a major role in the selective removal of
abnormal proteins requires the attachment of ubiquitin to a target
protein prior to degradation(1, 5, 6) .
Ubiquitin is a small protein (76 amino acid residues) with a tightly
packed globular structure(7) . Its conjugation to target
proteins is an ATP-dependent multistep process catalyzed by the enzymes E1, E2, and E3(6) . The coupling of
ubiquitin to acceptor proteins involves a preliminary ATP-dependent
step catalyzed by the ubiquitin-activating (E1) enzyme. The
activated ubiquitin is transferred to a further cysteine in a
ubiquitin-conjugating enzyme (E2), which attaches ubiquitin to
its target. Some reactions require additional E3-proteins
(ubiquitin ligases), which serve as substrate recognition
proteins(8) . Once modified with multiubiquitin chains proteins
are degraded by an ATP-dependent, multicomponent proteinase complex,
the so-called 26-S proteasome, with a concominant recycling of free
ubiquitin(9) . Alternatively, ubiquitinated proteins are
rescued by isopeptidases, which cleave the isopeptide bond between
ubiquitin and the target protein(10) . Ubiquitin is present
in all eukaryotic cells. Its amino acid sequence is of unparalleled
high conservation. There is little variance in all animal species
examined including insects, fish, amphibians, birds, and humans. Only
two amino acids differ between the lower eukaryote Trypanosoma
cruzi and the consensus established for higher eukaryotes; three
residues vary between the yeast and plant protein (11) . At the
moment ubiquitin and its conjugating system are thought to be present
only in eukaryotes and
archaebacteria(1, 2, 12, 13, 14) . Extending our studies on nitrogen fixation by
cyanobacteria(15, 16) , we have begun to investigate
whether ubiquitin may be present in these organisms. Cyanobacteria are
a diverse group of Gram-negative photosynthetic prokaryotes, often with
the ability to fix atmospheric nitrogen. Biological nitrogen fixation
is catalyzed by an extremely oxygen-sensitive mechanism. In filamentous
cyanobacteria such as Anabaena, nitrogen fixation is
restricted to differentiated cells termed heterocysts, with
special features providing adequate protection of
nitrogenase(17) . However, prolonged oxygen treatment or
activated oxygen species leads to proteolytic degradation of
nitrogenase itself (for review see (18) ). Although many
structural nif genes are coregulated by oxygen, repression in Anabaena 7120 requires a concentration of oxygen greater than
that needed to destroy nitrogenase(19) . This in turn
implicates the existence of a permanent and controlled turnover of the
newly formed nitrogenase components. In this paper, we first
describe the purification of ubiquitin from a eubacterium, namely the
cyanobacterium Anabaena variabilis. Initial biochemical
characterizations showed remarkable similarity to the mammalian form.
Moreover, added to cell-free extracts from A. variabilis heterocysts both the bacterial and the bovine ubiquitin became
conjugated with several target proteins.
MATERIALS AND METHODS
Organism and Growth ConditionsAxenic A.
variabilis (ATCC 29413) was cultivated autotrophically in mineral
medium without organic carbon or nitrogen at 30 °C in a thermostat
as described(15) . The cultures were illuminated with
continuous fluorescent white light (200 µE m s ) and supplied with a sterile
air/CO mixture (98/2 v/v; 60 ml/min).
Purification of Cyanobacterial UbiquitinCell
paste (50 g) of A. variabilis was suspended in 2 volumes
(about 100 ml) of extraction buffer containing 120 mM sodium
citrate, pH 5, 10 mM EDTA, 1 mM dithiothreitol, and 3
mMp-chloromercuribenzoate just added prior to use.
Cells were broken with a French pressure cell at 124 megapascals (two
cycles) as described and cell debris pelleted by centrifugation at
35,000 g for 30 min. The supernatant was heated to 86
°C for 15 min. All subsequent steps were carried out at 4 °C.
Precipitated protein was removed by centrifugation for 20 min at 47,000
g. After fractionated ammonium sulfate precipitation
(45-90%, each centrifugation for 20 min at 47,000 g) the the final precipitate (180 mg of protein) was
resuspended in 40 mM Tris/HCl, pH 7.8, 1 mM dithiothreitol, and loaded to a Sephadex G-50 S (Pharmacia Biotech
Inc.) column (2.7 70 cm) equilibrated with the same buffer; the
flow rate was 1 cm ml . Fractions were analyzed with
SDS-PAGE ( )(Tricine gels, 17%) and immunoblotting with
anti-ubiquitin. Fractions containing free ubiquitin were pooled and
concentrated with Centriprep 3 (Amicon). Subsequently, the concentrate
(2 ml with 24 mg of protein) was applied to a Superose 12 preparation
grade column (1.6 50 cm, Pharmacia; flow rate, 0.33 ml
ml ) equilibrated with buffer as described for the
first gel filtration. Fractions containing ubiquitin (7 ml with 0.16 mg
of total protein) were pooled and concentrated to 60 µl with
Centricon 3. After a 20-fold dilution with 5 mM potassium
phosphate, pH 7.5, the solution was loaded onto a hydroxylapatite
column (0.5 5 cm, 10 µm of HPLC material from Bio-Rad)
equilibrated with the same buffer containing 10 µM CaCl . The flow rate was 0.5 ml ml .
Ubiquitin eluted at an ionic strength of 30 mM potassium
phosphate (1.5 ml containing 450 ng of protein). The pooled fractions
were concentrated to 6 ng µl ml and stored at 70
K for further use.
Isolation of HeterocystsFor heterocyst isolation
a 24-h culture of A. variabilis was bubbled with H for 5 min and subsequently pelleted (4,000 g, 5
min). The chlorophyll a content of the cell suspension was
adjusted to 200-250 µg ml with a combined
H/P buffer (30 mM HEPES; 30 mM PIPES; 1 mM MgCl ; pH 7.2); 10 mM neutralized EDTA and 1
mg of lysozyme ml (Sigma) were added and the mixture
stirred for 30 min at 30 °C. To eliminate the lysozyme, the
suspension was centrifuged at 1,400 g for 5 min and
the pellet resuspended in H/P buffer (the lysozyme does not contain any
traces of ubiquitin as determined by SDS-PAGE and subsequent
immunoblotting). After sonication for 8-12 min in a sonic
cleaning bath (Sonorex PK 102) the heterocysts were sedimented at 1,400
g for 5 min. After washing three times in H/P buffer,
the cells were centrifuged three times for 5 min at 1,000 g, 650 g, 500 g,
respectively, resuspended in 2 ml of H/P buffer, and stored in liquid
nitrogen.
Electrophoretic Methods and Immunological
DetectionCell extracts were separated by SDS-PAGE; the
polyacrylamide was 12.5% (total monomer concentration of acrylamide, T,
and 0.82% cross-linker, C) for the separating and 5% (T, and 2.7% C)
for the stacking gel. The purification of ubiquitin was monitored by
Tricine SDS-PAGE (16.5% T, 3% C) as described by
Schägger and von Jagow(20) . Silver
staining was by the method of Rabilloud et al.(21) .
Immunoblotting was as described previously(15) . Proteins were
transferred to Immobilon-P (Millipore) in 25 mM Tris, 192
mM glycine, and 20% (v/v) methanol. Proteins recognized by
affinity-purified anti-ubiquitin antibody (Sigma) were detected using
alkaline phosphatase-conjugated secondary antibodies and nitroblue
tetrazolium/bromochloroindolyl phosphate. After silver staining or
immunoblotting gels and blots were scanned with a laser densitometer at
633 nm (Ultroscan 2202, Pharmacia). For quantification of the scanned
profile the GELSCAN 2190 program was used (Apple USCD, Pharmacia).
NH -terminal SequencingTransfer of
proteins to Immobilon-P was performed in 10 mM CAPS, pH 11.
The blots were stained with Coomassie Brilliant Blue R-250 (Pierce),
and after destaining and washing they were dried under air. The
NH -terminal sequence of electroblotted proteins was
determined using an automated sequenator equipped with an on-line HPLC
system (Applied Biosystems).
Southern HybridizationDNA was isolated as
described(16) . Genomic DNA from calf thymus was purchased from
Sigma. After an overnight digestion with EcoRV and HindIII the fragments were separated on agarose gels (0.8%).
DNA transfer on a filter (Hybond N+, Amersham Corp.) and
hybridizations were performed at high stringency conditions according
the method of Southern(22) . Probes were custom synthesized
digoxygenin-labeled oligonucleotides from MWG Biotech (Munich,
Germany). The 20-mer oligonucleotides (oligonucleotide I:
5`-GA(TC)TA(TC)AA(TC)AT(TCA)CA(GA)AA(GA)GA-3`; oligonucleotide II:
5`-AA(AG)AT(ACT)CA(AG)GA(CT)AA(AG)GA(AG)GG-3`) correspond to amino acid
residues 58-64 and 29-35 of bovine ubiquitin,
respectively(11) . Detection was with a digoxygenin luminescent
detection kit (Boehringer Mannheim).
RESULTS AND DISCUSSION
In a first attempt to detect ubiquitin in A. variabilis crude extracts were analyzed with anti-ubiquitin (bovine). Western
blotting of both heterocyst and vegetative Anabaena cell
extracts has revealed the presence of high molecular weight proteins
representing ubiquitin conjugates formed in vivo. However,
even under the homogenization conditions described which preclude
COOH-terminal proteolysis of ubiquitin (possibly leading to a loss of
antigenicity; 23) only trace amounts of unbound ubiquitin could be
detected (not shown). A previous report on the detection of ubiquitin
in crude extracts from Escherichia coli(24) has been
never confirmed. On the other hand, there are very recent speculations
that parts of the ubiquitin system may occur in
eubacteria(25) . Accordingly, we considered purification of the
cyanobacterial protein and proof of its functionality as important. Of
course we have been aware of the risk of contamination by eukaryotic
ubiquitin. However, the strain used is an axenic one. Photoautotrophic
growth conditions implicate the absence of any organic carbon source.
The columns used for purification had been cleaned prior to the
addition of the cyanobacterial samples. Previous studies have shown
that ubiquitin, regardless of the source, is remarkably heat-stable.
Therefore, by heating the crude extract to 86 °C, it was possible
to denature and precipitate the majority of proteins, leaving ubiquitin
in solution. After concentrating the supernatant by fractionated
ammonium sulfate precipitation (45-90%), a gel filtration run on
Sephadex G-50 was carried out. Besides desalting, this column served to
separate ubiquitin from proteins of high molecular weight. Subsequently
the concentrated ubiquitin-containing fractions were subjected to a
second gel filtration on Superose 12 preparation grade. The
cyanobacterial protein eluted at a position identical to bovine
ubiquitin (M = 10,000). The final
purification was by hydroxylapatite chromatography (Fig. 1).
Ubiquitin prepared by this protocol was more than 90% homogeneous as
determined by SDS-PAGE. The final yield was very low. 50 g of cell
paste yielded 450 ng of free homogeneous ubiquitin. In eukaryotes
ubiquitin is a fairly abundant protein, in the range of some mg/kg of
tissue(23, 26) . Our modest yield was caused by the
low ratio of free to conjugated ubiquitin, which might be improved by
extraction procedures other than that reported. As described, cells
were broken by two cycles through a French pressure cell. This
procedure was carried out at room temperature and required more than 30
min. During this period the main part of free ubiquitin was possibly
conjugated to damaged target proteins. Furthermore, it has been shown
with tissues from various organisms that there is a dramatic decrease
of unbound ubiquitin in response to stress
conditions(27, 28) . We did not address this question
for A. variabilis. An effective method of increasing the pool
of free ubiquitin in eukaryotic cells is based on ATP depletion.
Corresponding experiments with Anabaena cells were hampered by
the well known and very fast adaption of cyanobacteria to starvation,
which is accompanied by a fundamental reorganization of the
cells(18) . A comparison of different homogenization procedures
of Nostoc commune UTEX 584 cells with respect to the yield of
unbound ubiquitin is shown in Fig. 2. In a crude extract treated
as described for Anabaena there was no detectable free
ubiquitin (lane 1). A small amount of cell paste (0.25 g)
homogenized in a mortar under liquid nitrogen immediately subjected to
SDS-PAGE resulted in a substantial decrease of conjugates and in an
easily detectable amount of free ubiquitin (lane 2).
Up-scaling of this procedure is not possible at the moment.
Figure 1:
Last step of purification of ubiquitin
from A. variabilis by hydroxylapatite chromatography. Protein
is plotted as absorbance at 280 nm at the left axis. The insets show the relevant sections of a silver-stained SDS-PAGE
(a 16.5% Tricine gel with a 10% spacer) and an immunoblot developed
with anti-ubiquitin (bovine), respectively. Bovine ubiquitin (U(bov)) served as standard (20 ng for silver staining, 5 ng
for the Western blot). The purified protein migrated in a position
identical to bovine ubiquitin (M = 5,500)
and showed antigenicity comparable to the ubiquitin
antibody.
Figure 2:
Immunoblot analysis of extracts from N. commune UTEX 584 showing ubiquitinated proteins and the
presence of unbound ubiquitin. Cultivation of the axenic strain was
carried out in the absence of an organic carbon source and
nitrogen(47) . After separation (16.5% Tricine gel) the
detection was performed with the ubiquitin antibody. Lane 1 shows a sample homogenized as described for Anabaena. Lane 2 represents a sample (0.25 g) broken with a mortar under
liquid nitrogen. Protein content in the samples was 20 µg. The arrow indicates the position of free
ubiquitin.
Initial
biochemical analysis of the Anabaena ubiquitin indicated that
it was very similar to the mammalian form. On SDS-PAGE, the
cyanobacterial protein migrated slightly above the bovine ubiquitin (M 5,500), with an apparent M of 6,000 (Fig. 1, upper inset). Both of the
proteins showed antigenicity comparable to that of the antibody raised
against ubiquitin (lower inset). Isoelectric focusing
indicated an isoelectric point (pI) at pH 6.5 (Fig. 3A). This is somewhat different from the reported
pI of 6.7 of the plant and mammalian proteins(5, 23) .
Since in our experiment bovine ubiquitin also focused at pH 6.5, we
attribute this difference to our gel system or the marker proteins
used. Fig. 3B compares the NH -terminal
sequence of the cyanobacterial and the mammalian ubiquitin. As expected
there was complete identity. A striking feature of ubiquitin is the
exceptional conservation of its primary structure. Analyses of the
amino acid sequence of ubiquitin from a variety of organisms indicate
that within the 76 residues only 7 are variant(11) . Still,
there might be differences between the Anabaena protein and
the eukaryotic ubiquitin. A slightly different size was observed with
various gel systems (Tricine gels and conventional SDS-PAGE). There was
also a reproducible difference in the elution from hydroxylapatite
(elution was effective at 30 mM phosphate compared with 15
mM for the bovine protein). These findings suggest high
similarity but not complete identity between the two proteins. This
fact excludes any contamination of our preparation by eukaryotic
ubiquitin. As a further proof we carried out hybridizations of digested
DNA from Anabaena with two different oligonucleotides
corresponding to two regions of the mammalian protein (Fig. 4A). The cross-reaction, i.e. the
detection of identical bands by both oligonucleotides, provides strong
evidence for the existence of at least one ubiquitin gene in Anabaena. Fig. 4B shows the absence of
corresponding sequences in E. coli and Brevibacterium
linens. Although we have carried out only some initial genetic
work it seems clear that the cyanobacterial system does not match the
eukaryotic one, which consists of a variety of ubiquitin genes usually
resulting in Southern hybridization with a much more complex band
pattern (see (11) ).
Figure 3:
Panel A, determination of the isoelectric
point. 10 ng of bovine ubiquitin (U(bov)) and 5 ng of the
purified protein (U(Av)) were subjected to isoelectric
focusing. The precast gel (pH 3-9, Serva) was run for 4 h at a
constant current of 3.6 mA, reaching a final voltage of 3,000 V. After
blotting, detection was with ubiquitin antibodies. Panel B,
NH -terminal amino acid sequence homology between the
purified cyanobacterial protein (U(Av)) and bovine ubiquitin (U(bov)). The primary sequence of the purified protein was
determined as described.
Figure 4:
Panel A, Southern hybridization of
digoxygenin-labeled oligonucleotides with genomic DNA from A.
variabilis. 10 µg of DNA was digested with EcoRV (lanes 1 and 1`) or HindIII (lanes 2 and 2`) and hybridized under high stringency conditions
to oligonucleotides I (lanes 1 and 2) or II (lanes 1` and 2`). Lane M shows a
digoxygenin-labeled molecular size standard. Corresponding bands are
marked with open triangles. Panel B, dot-blot with 3
µg of DNA from B. linens DSM 20426 (spot 1), E. coli (spot 2), A. variabilis (spot
3), and calf thymus (spot 4). Spots C serve as
controls (no DNA). Detection was as described for
immunoblotting.
The functionality of cyanobacterial
ubiquitin is shown in Fig. 5. Although the conjugation to target
proteins was somewhat less compared with the experiment with bovine
ubiquitin, the pattern of conjugates was identical (lanes 1 and 3). The lower activity may reflect nonproteolytic
modifications during extraction or purification or inherent structural
differences between the two ubiquitins. A similar difference in
activity probably caused by attachment of quinones has been reported
for oat ubiquitin(23) . Considering the conjugation of the
mammalian form by our cyanobacterial system it is likely that the
cyanobacterial ubiquitin is susceptible to an unknown damage during
extraction.
Figure 5:
Ubiquitination in extracts of heterocysts
using either A. variabilis or bovine ubiquitin. The reaction
mixtures (130 µg of cellular protein, 100 µM ATP, 2
mM MgCl , 1 mM dithiothreitol, 50 mM Tris/HCl, pH 7.8, plus 0.1 µg of ubiquitin either from A.
variabilis (U(Av)) or calf (U(bov)) were
incubated aerobically for 30 min at 24 °C in presence of protease
inhibitors (1 mM phenylmethylsulfonyl fluoride, 20 µM antipain, and 100 µM leupeptin). All samples (5
µg of protein) were separated on the same gel (12.5%) and analyzed
after blotting with anti-ubiquitin. Co, aliquots treated
identically without the addition of ubiquitin. The arrowhead at the right indicates the position of free
ubiquitin.
It has been shown that conjugation of ubiquitin to
protein substrates requires ATP (for review see (6) ).
Ubiquitin is activated by formation of an acylphosphoanhydride bond
between ATP and the COOH-terminal Gly-76 carboxyl group. Subsequently,
a high energy thioester linkage is formed with an unique cysteine
residue of the activating enzyme E1. To show this
ATP-dependent activation and conjugation in Anabaena extracts,
we carried out experiments using an ATP-generating and an ATP-depleting
system, respectively. Because we have isolated only small amounts of Anabaena ubiquitin these assays were done with bovine
ubiquitin. The results are presented by Fig. 6. Even in the
absence of added ATP or an ATP-generating enzyme substantial
conjugating activity could be observed (panel A). A similar
phenomenon has been reported for extracts from green plant
tissues(29, 30) . The authors attributed this activity
to high endogenous levels of ATP (about 50 µM), which in
turn correspond to the reported K of the
activating enzymes E1 from oat (29) or
reticulocytes(31) . In fact, the Anabaena extracts
used contained about 20 µM ATP. After incubation in the
presence of 200 µM ATP, creatine phosphate, and
phosphocreatine kinase, an increase of high molecular weight conjugates
occurred (panel B). Neither desalting nor the presence of an
ATP-depleting system (hexokinase) allowed a complete inhibition of
ubiquitin conjugation. Nevertheless, as shown in panel C, the
decrease of ubiquitinated proteins was significant. Therefore we
conclude that the ubiquitin-activating system in Anabaena is
essentially like the eukaryotic one. Most recently sequence comparisons
of a newly discovered human ubiquitin-activating enzyme (32) showed significant identity (although not within the E1 portion) with an open reading frame from Anabaena 7120 obviously involved in nitrogen fixation(33) .
Figure 6:
ATP-dependent formation of ubiquitin
conjugates. Bovine ubiquitin was added to crude extracts as described
for Fig. 3. Panel A, no addition of ATP. Panel
B, the assay contained 200 µM ATP, 5 mM creatine phosphate, and 1 unit of phosphocreatine kinase (Sigma). Panel C, the assay contained 10 mM deoxyglucose and 1
unit of hexokinase (Sigma). Before the addition of ubiquitin the assays
were preincubated for 5 min. After separating the extracts by SDS-PAGE
and subsequent immunoblotting with anti-ubiquitin, the blots were
scanned densitometrically. The positions of the molecular weight
markers are indicated.
One might
speculate on the function of ubiquitin in cyanobacteria. In eukaryotes
regulation of ubiquitin conjugation is presumably performed through
various events. Substrates of the N-end rule pathway are recognized and
degraded depending on the identity of their NH -terminal
residues(34) . Denaturation of proteins, e.g. by heat
stress or synthesis of misfolded proteins, may lead to exposure of
other recognition sites for the conjugating enzymes E2 or E3. Other signals are phosphorylation of cyclins(35) ,
light-induced conversion of the plant phytochrome into the far red
light-absorbing form(36) , or the binding of the papilloma
virus E6 protein to the tumor suppressor p53(14) . Many filamentous cyanobacteria differentiate heterocysts with
biochemical and structural features providing adequate protection of
nitrogen fixation against oxygen. However, it is well documented that
prolonged oxygen treatment can destroy the integrity of the Fe-S and
Mo-Fe cofactors (for review see (18) ). Harsh in vivo conditions with respect to oxygen tension or C-starvation
irreversibly affect and degrade cyanobacterial nitrogenase subunits
itself and probably many of the associated
components(18, 37) . Therefore a possible
participation of ubiquitin in the degradation of dinitrogenase
reductase (Fe-protein) was examined (data on the oxygen-induced
degradation of nitrogenase will be published elsewhere). Fig. 7presents Western blots of cell extracts developed against
anti-Fe-protein (15) and anti-ubiquitin antibodies. Because of
the crude extracts used a number of heavily stained bands (see also Fig. 5) had to be accepted on the ubiquitin blot. However, with
protease inhibitors present (lanes 2 and 5; arrowheads 3 and 4), and even more pronounced after
the addition of bovine ubiquitin (lanes 3 and 6; arrowheads 1 and 2), a ladder of protein species (M 60,000-100,000) cross-reacting with both
antibodies became apparent. After complete degradation of the
Fe-protein (lanes 1 and 4) only one stable product of M 43,000, which was recognized by both of the
antibodies, escaped proteolysis (arrowhead 5). Especially the
appearance of additional cross-reacting products after incubation with
ubiquitin (arrowheads 1 and 2) suggest ubiquitination
of the Fe-protein of nitrogenase.
Figure 7:
Appearance of ubiquitinated bands of the
cyanobacterial Fe-protein. Western blot analysis was performed with
either Fe-protein (left panel) or ubiquitin antibodies (right panel). Aerobic incubation of extracts was for 45 min
with 100 µM ATP present as described for Fig. 5. As
indicated at the bottom, samples applied to lanes 2, 3, 5, and 6 contained protease inhibitors (1
mM phenylmethylsulfonyl fluoride, 20 µM antipain,
and 100 µM leupeptin). Prior to incubation, 0.5 µg of
ubiquitin (from bovine red blood cells) was added to samples 3 and 6.
For SDS-PAGE a 12.5% gel was used. This gel system did not separate the
modified from unmodified forms of Fe-protein(15) , which is
indicated by an arrow. Arrowheads 1-5 point to
the bands recognized by both the Fe-protein and the ubiquitin
antibodies, respectively. U, free
ubiquitin.
In addition, the ubiquitin system
may be necessary during dehydration-induced stresses in cyanobacterial
cells. Many cyanobacteria colonize extreme habitats and have an
extraordinarily desiccation tolerance. Terrestrial cyanobacteria such
as N. commune are subjected to multiple and rapid
cycles of wetting and drying with oxidation- and radiation-induced
stresses(38) . These events are accompanied by a massive
turnover of proteins. Cellular housekeeping may represent one aspect of
the cyanobacterial ubiquitin system. During initiation of nitrogen
fixation and heterocyst differentiation about 50% of the abundant
proteins are subject to degradation, among them
ribulose-1,5-bisphosphate carboxylase (which has been identified as a
target for ubiquitination; 29) and phycobiliproteins(39) . The
cyanobacterial ubiquitin system probably plays a major role in this
fundamental reorganization of the differentiating cell. Our
identification of ubiquitin in heterocystous cyanobacteria of the Anabaena and Nostoc type continues a series of recent
publications on eukaryotic features unique to these prokaryotic
organisms. Anabaena species possesses both self-splicing group
I introns (40) and eukaryotic RNA-binding proteins of the
ribonucleoprotein family responsible for the excision of
introns(41) . Considering their multicellular organization, the
discovery of eukaryotic-type protein kinases in Anabaena species (42) and of a eukaryotic tyrosine/serine
phosphatase in Nostoc species (43) was not unexpected.
In contrast to the simple prokaryotic systems these enzymes are thought
to be instrumental in intercellular signal transduction and cell
differentiation. Furthermore, both Nostoc and Anabaena species possess calmodulin (44, 45) , which
mediates the regulation of a variety of cellular processes in plants
and animals. Like ubiquitin, calmodulin is highly conserved and has
been thought to exist only in eukaryotes. Interestingly it has been
shown that in lower protists like Trypanosoma species a
genomic and transcriptional linkage of the calmodulin and the ubiquitin
systems exists(46) . In this context the presence of a
protozoon-like myoglobin in Nostoc species should be
mentioned(47) . These unexpected eukaryotic features in
cyanobacteria may raise some questions whether there are common
prokaryotic origins of the corresponding genes. It has been suggested
that during evolution many genes have migrated from the endosymbiont
genome to the eukaryotic nucleus (e.g.(41) ).
FOOTNOTES
- *
- This work was supported by the Deutsche
Forschungsgemeinschaft through its Sonderforschungsbereich 248
Stoffhaushalt des Bodensees. The costs of publication of this article
were defrayed in part by the payment of page charges. This article must
therefore by hereby marked ``advertisement'' in
accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
- §
- Present address: Waksman Institute, Rutgers
University, Piscataway, NJ 08855-0759.
- ¶
- To
whom correspondence should be addressed. Tel.: 49-7531-882101; Fax:
49-7531-883042.
- (
) - The abbreviations used are:
PAGE, polyacrylamide gel electrophoresis; Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine;
HPLC, high performance liquid chromatography; PIPES,
piperazine-N,N`-bis(2-ethanesulfonic acid); CAPS,
3-(cyclohexylamino)-1-propanesulfonic acid.
ACKNOWLEDGEMENTS
We thank L. Cobianchi (Universität
Konstanz) for NH -terminal sequencing and R. Grimm for
skillful technical assistance. Furthermore we thank M. Potts
(Blacksburg, VA) for comments on and corrections of our manuscript. The
experiments with Nostoc were carried out in the laboratory of
M. Potts. The Brevibacterium DNA was kindly provided by A.
Ruther, this laboratory.
REFERENCES
- Jentsch, S. (1992) Annu. Rev. Genet. 26, 179-207
[CrossRef][Medline]
[Order article via Infotrieve]
- Vierstra, R. D. (1993) Annu. Rev. Plant Physiol. Plant Mol. Biol. 44, 385-410
[CrossRef]
- Finley, D., and Chau, V. (1991) Annu. Rev. Cell Biol. 7, 25-69
[CrossRef]
- Goldberg, A. L. (1992) Eur. J. Biochem. 203, 9-23
[Medline]
[Order article via Infotrieve]
- Wilkinson, K. D., Urban, M. K., and Haas, A. L. (1980) J. Biol. Chem. 255, 7529-7532
[Abstract/Free Full Text]
- Hershko, A., and Ciechanover, A. (1992) Annu. Rev. Biochem. 61, 761-807
[CrossRef][Medline]
[Order article via Infotrieve]
- Vijay-Kumar, S., Bugg, C. E., and Cook, W. J. (1987) J. Mol. Biol. 195, 531-544
- Ciechanover, A., and Schwartz, A. L. (1989) Trends Biochem. Sci. 14, 483-488
[CrossRef][Medline]
[Order article via Infotrieve]
- Rechsteiner, M., Hoffman, L., and Dubiel, W. (1993) J. Biol. Chem. 268, 6065-6068
[Free Full Text]
- Andersen, M. W., Goldknopf, I. L., and Busch, H. (1981) FEBS Lett. 132, 210-214
[CrossRef][Medline]
[Order article via Infotrieve]
- Jentsch, S., Seufert, W., and Hauser, H. P. (1991) Biochim. Biophys. Acta 1089, 127-139
[Medline]
[Order article via Infotrieve]
- Rechsteiner, M. (1991) Cell 66, 615-618
[CrossRef][Medline]
[Order article via Infotrieve]
- Wolf, S., Lottspeich, F., and Baumeister, W. (1993) FEBS Lett. 326, 42-44
[CrossRef][Medline]
[Order article via Infotrieve]
- Scheffner, M., Huigbregtse, J. M., Vierstra, R. D., and Howley, P. M. (1993) Cell 75, 495-505
[CrossRef][Medline]
[Order article via Infotrieve]
- Durner, J., Böhm, I., Hilz, H., and Böger, P. (1994) Eur. J. Biochem. 220, 125-130
[Medline]
[Order article via Infotrieve]
- Brass, S., Westermann, M., Ernst, A., Reuter, W., Wehrmeyer, W., and Böger, P. (1994) Appl. Environ. Microbiol. 60, 2575-2583
[Abstract/Free Full Text]
- Haselkorn, R. (1978) Annu. Rev. Plant Physiol. 29, 319-344
- Gallon, J. R. (1992) New Phytol. 122, 571-609
[CrossRef]
- Elhai, J., and Wolk, C. P. (1991) Abstracts of the Sixth International Symposium on Photosynthetic Prokaryotes , p. 114B, University of Massachusetts, Amherst, MA
- Schägger, H., and von Jagow, G. (1987) Anal. Biochem. 166, 368-379
[CrossRef][Medline]
[Order article via Infotrieve]
- Rabilloud, T., Carpentier, G., and Tarroux, P. (1988) Electrophoresis 9, 288-291
[CrossRef][Medline]
[Order article via Infotrieve]
- Southern, E. M. (1975) J. Mol. Biol. 98, 503-517
[CrossRef][Medline]
[Order article via Infotrieve]
- Vierstra, R. D., Langan, S. M., and Haas, A. L. (1985) J. Biol. Chem. 260, 12015-12021
[Abstract/Free Full Text]
- Goldstein, G., Scheid, M., Hammerling, U., Boyse, E. A., Schlesinger, D. H., and Niall, H. D. (1975) Proc. Natl. Acad. Sci. U. S. A. 72, 11-15
[Abstract/Free Full Text]
- Gonen, H., Smith, C. E., Siehel, N. E., Kahana, C., Merrick, W. C., Chakraburtty, K., Schwartz, A. L., and Ciechanover, A. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 7648-7652
[Abstract/Free Full Text]
- Ferguson, D. L., Guikema, J. A., and Paulsen, G. M. (1990) Plant Physiol. 92, 740-746
[Abstract/Free Full Text]
- Parag, H. A., Raboy, B., and Kulka, R. G. (1987) EMBO J. 6, 55-61
[Medline]
[Order article via Infotrieve]
- Bond U., Agell, N., Haas, A. L., Redman, K., and Schlesinger, M. J. (1988) J. Biol. Chem. 263, 2384-2388
[Abstract/Free Full Text]
- Veierskov, B., and Ferguson I. B. (1991) Plant Physiol. 96, 4-9
[Abstract/Free Full Text]
- Vierstra, R. D. (1987) Plant Physiol. 84, 332-336
[Abstract/Free Full Text]
- Ciechanover, A., Heller, H., Elias, S., Haas, A. L., and Hershko, A. (1980) Proc. Natl. Acad. Sci. U. S. A. 77, 1365-1368
[Abstract/Free Full Text]
- Kok, K., Hofstra, R., Pilz, A., van den Berg, A., Terpstra, P., Buys, C. H. C. M., and Carritt, B. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 6071-6075
[Abstract/Free Full Text]
- Borthakur, D., Basche, M., Buikema, W. J., Borthakur, P. B., and Haselkorn, R. (1990) Mol. & Gen. Genet. 221, 227-234
- Bachmair, A., and Varshavsky, A. (1989) Cell 56, 1019-1032
[CrossRef][Medline]
[Order article via Infotrieve]
- Glotzer, M., Murray, A. W., and Kirschner, M. W. (1991) Nature 349, 132-138
[CrossRef][Medline]
[Order article via Infotrieve]
- Shanklin, J., Jabben, M., and Vierstra, R. D. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 359-363
[Abstract/Free Full Text]
- Murry, M. A., Hallenbeck, P. C., Esteva, D., and Benemann, J. R. (1983) Can. J. Microbiol. 29, 1286-1294
- Hill, D. R., Hladun, S. L., Scherer, S., and Potts, M. (1994) J. Biol. Chem. 269, 7726-7734
[Abstract/Free Full Text]
- Collier, J. L., and Grossman, A. R. (1994) EMBO J. 13, 1039-1047
[Medline]
[Order article via Infotrieve]
- Xu, M.-Q., Kathe, S. D., Goodrich-Blair, H., Nierzwicki-Baur, S., and Shub, D. S. (1990) Science 250, 1566-1570
[Abstract/Free Full Text]
- Mulligan, M. E., Jackman, D. M., and Murphy, S. T. (1994) J. Mol. Biol. 235, 1162-1170
[CrossRef][Medline]
[Order article via Infotrieve]
- Zhang, C.-C. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 11840-11844
[Abstract/Free Full Text]
- Potts, M., Sun, H., Mockaitis, K., Kennelly, P. J., Reed, D., and Tonks, N. K. (1993) J. Biol. Chem. 268, 7632-7635
[Abstract/Free Full Text]
- Onek, L. A., Lea, P. J., and Smith, R. J. (1994) Arch. Microbiol. 161, 352-358
[CrossRef]
- Petterson, A., and Bergman, B. (1989) FEMS Microbiol. Lett. 60, 95-100
[CrossRef]
- Wong, S., Morales, T. H., Neigel, J. E., and Campbell, D. A. (1993) Mol. Cell. Biol. 13, 207-216
[Abstract/Free Full Text]
- Potts, M., Angeloni, S. V., Ebel, R. E., and Bassam, D. (1992) Science 256, 1690-1692
[Abstract/Free Full Text]
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.

CiteULike Complore Connotea Del.icio.us Digg Reddit Technorati What's this?
This article has been cited by other articles:

|
 |

|
 |
 
A. Mani and E. P. Gelmann
The Ubiquitin-Proteasome Pathway and Its Role in Cancer
J. Clin. Oncol.,
July 20, 2005;
23(21):
4776 - 4789.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
P. Zwickl, D. Ng, K. M. Woo, H.-P. Klenk, and A. L. Goldberg
An Archaebacterial ATPase, Homologous to ATPases in the Eukaryotic 26 S Proteasome, Activates Protein Breakdown by 20 S Proteasomes
J. Biol. Chem.,
September 10, 1999;
274(37):
26008 - 26014.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
A. Lupas, P. Zwickl, T. Wenzel, E. Seemuller, and W. Baumeister
Structure and Function of the 20S Proteasome and of Its Regulatory Complexes
Cold Spring Harb Symp Quant Biol,
January 1, 1995;
60(0):
515 - 524.
[Abstract]
[PDF]
|
 |
|
Copyright © 1995 by the American Society for Biochemistry and Molecular Biology.
|
Advertisement
Advertisement
|