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(Received for publication, October 6, 1994) From the
We isolated and sequenced 2,117 nucleotides of the promoter
region of the human tryptophan hydroxylase (TPH) gene. Transient
transfection in pinealocyte cultures and PC12 cells was used to
investigate the human TPH (hTPH) gene promoter activity and its
regulation by the cAMP signaling pathway. A region of 2,117 base pairs
upstream of the transcription initiation site of the hTPH gene
efficiently directed the transcription of a luciferase reporter gene
but not in a cell-specific manner. The hTPH promoter activity was
significantly enhanced by a cyclic AMP analog in the two cell types.
Deletion analysis showed that the promoter region from -73 to
+2 is sufficient to direct cAMP-dependent transcription, although
it does not contain a motif exhibiting a significant identity to the
cAMP-responsive element (CRE) or AP-2 binding site. Following
site-directed mutagenesis of the region between -73 and
-51, an inverted CCAAT box motif was identified as essential for
cAMP inducibility of the hTPH promoter. This sequence between -73
and -51 alone allowed cAMP enhancement of transcription when
fused to a heterologous promoter. Additionally, electrophoretic
mobility shift assays showed that a specific protein-DNA complex is
formed between an oligonucleotide corresponding to the inverted CCAAT
box motif and nuclear proteins from pinealocytes treated or not treated
with cAMP. Thus cAMP responsiveness of hTPH gene expression is mediated
by a cis-acting element, which shares strong identitiy with an inverted
CCAAT box and which binds to a constitutively produced nuclear factor.
Tryptophan hydroxylase (TPH) ( The pineal gland also contains large amounts of
TPH. Serotonin is the metabolic precursor of melatonin(1) ,
which is the main neurohormone produced and secreted in a circadian
manner by the pineal gland(7, 8, 9) . This
daily fluctuation depends upon the activity of the suprachiasmatic
nucleus, from which regulatory signals are transmitted to the pineal
gland by the sympathetic fibers of the cervical superior
ganglion(10) . Released noradrenaline activates
There is as yet no
direct evidence to show that cAMP or other compounds modulate
transcription of the TPH gene. To study in more detail the factors
affecting serotonin biosynthesis in the brain, we used a molecular
approach to assess the regulation of human TPH. We have studied the
genomic organization of the hTPH gene and shown that a single
transcriptional initiation site produces a large diversity of TPH
mRNAs. This diversity is restricted to the 5`-leader sequence and
results from a complex combination of exon and intron splicing in this
region (Boularand et al., preceding article; (50) ).
These different 5`-ends of the human TPH mRNA might be differentially
degraded and translated and thereby involved in the regulation of TPH
expression. In the present study, we show that the 2-kb region
upstream of the single human TPH mRNA cap site exhibits the
characteristic features of a promoter and is able to drive the
expression of a luciferase reporter gene in primary cultures of rat
pinealocytes and in PC12 cells. We then demonstrate that the
transcriptional activity of the hTPH promoter is modulated by cAMP
treatment in the two cell types, and we identify by site-directed
mutagenesis a cAMP regulatory motif very similar to an inverted CCAAT
box and which confers cAMP responsiveness to a heterologous promoter.
The plasmid
Figure 1:
Nucleotide sequence of the 5`-flanking
region of the human tryptophan hydroxylase gene. The nucleotide
sequence from position -2117 to +32 is numbered relative to
the transcription initiation site labeled +1. Putative
cis-regulatory elements (TATA box, inverted CCAAT box, CCACC box, GC
rich boxes, C/EBP, AP-4 and AP-2 binding sites, and two 9-bp imperfect
direct repeats) are underlined.
We first verified that the SalI/AvaI fragment
carrying the 2,117 nucleotides upstream of the hTPH RNA initiation site
had a promoter activity. Since no mammalian serotonergic neuronal cell
line or immortalized pineal gland cell line expressing the TPH gene was
available, the hybrid construct (PL
Figure 2:
Deletional analysis of cis-active DNA
elements in the human TPH gene 5`-flanking region. Top, a
series of constructions containing various lengths of the 5`-region of
the hTPH promoter plus 29 bp of exon 1 were fused to the structural
gene for firefly luciferase. The hTPH promoter-luciferase constructs
were introduced into primary cultures of rat pinealocytes and PC12
cells for transient expression assays. Luciferase activity is expressed
as relative light units (RLU) normalized to CAT activity in
the same cell extract (RSV-CAT) expressed in milliunits. The deletion
constructs of the hTPH promoter are indicated on the abscissa.
PL
To
determine whether the hTPH promoter sequence contained the elements
necessary for tissue-specific expression of hTPH gene, the TPH
promoter-luciferase fusion constructs were also used to transfect the
rat pheochromocytoma cell line (PC12) and human HeLa cells, which do
not exhibit TPH activity. Transfected PC12 cells (Fig. 2) and
HeLa cells (data not shown) each expressed high levels of luciferase
activity. Thus, the transfected sequences did not contain information
sufficient for cell type-specific expression. However, PC12 cells
transfected with the construct PL
Figure 3:
Luciferase activity of human TPH
promoter-luciferase fusion genes in pinealocyte cultures. A and B, pinealocytes were transfected with the hTPH
promoter-luciferase plasmids defined in Fig. 2and Fig. 4exposed or not exposed to 1 mM 8-Br-cAMP.
Luciferase activity is expressed as relative light units (RLU)
normalized to CAT activity in the same cell extract (RSV-CAT) expressed
in milliunits. The abscissa indicates the names of the
deletion constructs of the hTPH promoter. Data are mean ± S.E. (bars) values from at least three independent experiments done
in triplicate. Bottom, the two tables give the values
of the basal level of the reporter genes expression (RLU/mUCAT) and the
-fold induction of the reporter genes activity after 8-Br-cAMP
treatment (*, p < 10
Figure 4:
Nucleotide sequence of the human TPH
deletion constructs and position of the three site-directed mutations
in the hTPH promoter sequence. The name of each deletion construct is
indicated on the left of the corresponding nucleotide
sequence. Open boxes indicate the AP-4 binding site. Shaded boxes indicate the inverted CCAAT box and the TATA box.
The two arrows indicate the two 9-bp imperfect direct repeats
(RE2 and RE1). The transcriptional start site is indicated by the bent arrow. Black boxes indicate the positions of
site-directed mutations in the PL
Two additional plasmids
corresponding to 5`- and 3`-deletions of the hTPH promoter were
generated by PCR amplification (PL The
above observations were extended by transfection of PC12 cells with the
same TPH promoter-luciferase fusion constructs. The results were
entirely consistent with those described above except that the
8-Br-cAMP induction of the hTPH promoter was smaller (a
2-2.5-fold increase; data not shown).
Figure 5:
Mutational analysis of cAMP inducibility
of the human TPH promoter in pinealocyte and PC12 cells. Pinealocytes
and PC12 cells were transfected with mutated and control hTPH promoter
constructs defined in Fig. 4. The relative luciferase activity
is an arbitrary unit defined as RLU/mUCAT, set as 100 for the hTPH
promoter construct PL
Figure 6:
Electrophoretic mobility shift assay
(EMSA) with the TPH-CCAAT oligonucleotide in the presence of pineal
cell nuclear extracts. Nuclear extracts were prepared from
pinealocytes, which were treated or not treated with 8-Br-cAMP. The
labeled double-stranded TPH-CCAAT oligonucleotide (Wt) was incubated
with pinealocyte nuclear extracts in the presence or absence of a
250-fold excess of unlabeled oligonucleotide competitor. The
competitors used were the wild-type (Wt) or mutated TPH-CCAAT
oligonucleotide (M) or the consensus CRE-TH of the rat tyrosine
hydroxylase gene as indicated above each lane. The arrow denotes the complex (1) obtained with the TPH-CCAAT
oligonucleotide (lane 2).
Figure 7:
EMSA with the TPH-CCAAT oligonucleotide in
the presence of PC12 cell nuclear extracts treated with 8-Br-cAMP.
EMSAs were performed with a nuclear extract from PC12 cells and a
labeled, double-stranded TPH-CCAAT oligonucleotide (Wt) in the presence
or absence of a 250-fold excess of unlabeled oligonucleotide
competitor. The competitors used were the wild type (Wt) or mutated
TPH-CCAAT oligonucleotide (M), the consensus CRE-TH of the rat tyrosine
hydroxylase gene, and POU IgH of the immunoglobulin heavy chain as
indicated above each lane. The arrows denote the three
complexes (1, 2, and 3) obtained with the
TPH-CCAAT oligonucleotide (lane
2).
Figure 8:
Effect of 8-Br-cAMP on activity of the
TK-Luc fusion genes. Pinealocytes were exposed or not exposed to 1
mM 8-Br-cAMP after transfection with the plasmids Wtx3 or M3.
Wtx3 and M3 were derived from the plasmid
We report the identification, sequence, and characterization
of the promoter region of the human tryptophan hydroxylase gene. The
2,117-bp genomic region upstream of the hTPH mRNA cap site efficiently
promoted the transcription of a luciferase reporter gene in cell
cultures. This promoter belongs to the category of genes that possess a
TATA box(23) . Analysis of the basal transcription by
progressive deletions delineated a region of about 150 nucleotides from
-204 to -51, which appears critical for optimal promoter
activity in pinealocytes and PC12 cells. The shortening of the hTPH
promoter from 2,117 to 204 nucleotides did not significantly modify the
transcriptional activity of the corresponding constructs. In contrast,
further deletions of the hTPH promoter up to the nucleotide -73
strongly reduced transcription efficiency. Several putative regulatory
elements were found between positions -204 and -73: two G/C
rich regions, which could be DNA binding sites for the Sp1 protein; a
CCACCC element; an AP-2 binding site; and a C/EBP binding site. All of
these sequences are involved in the regulation of transcription of
numerous viral and eukaryotic genes (28, 29, 30, 31) . In the case of
the hTPH gene, the severance of the CCACCC sequence from the inverted
CCAAT box in the construct PL The isolated regulatory
region of the hTPH gene does not contain sufficient information to
mediate cell-type-specific expression in our experimental conditions,
with the exception of a weak tissue-specific repressor located between
-724 and -252 bp. The promoter was active both in primary
cultures of rat pinealocytes, cells that synthesize large amounts of
TPH enzyme, and also in PC12 and HeLa cells, which do not contain
detectable levels of TPH mRNA. The regulatory sequences conferring
tissue-specific expression could be either nonfunctional in these
cultured cells or localized elsewhere on the gene. The murine TPH
promoter has been isolated by Stoll and Goldman (35) and
provided us the opportunity to compare its organization with that of
the hTPH promoter. No significant identity was found in the two
proximal regions of the TPH promoters although they both contain a TATA
box, several identical upstream promoter elements including the
inverted CCAAT box sequence, the CCACCC motif, and GC boxes.
Surprisingly, 70% identity was found in a 450-nucleotide region
located, respectively, 1,550 and 520 bases upstream of the
transcription initiation site of human and mouse TPH promoters.
However, there is no evidence that this conserved region is important
either for the control of basal transcription or for the
tissue-specific expression of the hTPH mRNA (see below). cAMP-dependent intracellular signaling plays a major role in the
regulation of TPH activity. Indeed, tryptophan hydroxylase activity as
well as that of the arylalkylamine N-acetyl transferase, the
limiting enzyme in the biosynthesis of melatonin, are modulated by cAMP
during the circadian rhythm in the rat pineal
gland(13, 15) . Additionally, Foguet et al.(6) have found that TPH mRNA levels are increased by cAMP
in rat serotonergic neuronal cultures from raphe nuclei. Therefore,
cAMP may act at various different steps of the regulation of TPH
expression, both to activate the TPH enzyme via phosphorylation by a
cAMP-dependent protein kinase (36, 37) and to induce
the transcription of the TPH gene. We demonstrate that an increase
of intracellular cAMP levels stimulated human TPH gene transcription.
Transient transfection experiments showed that incubation with a cAMP
analog (1 mM 8-Br-cAMP) increased the transcriptional activity
of the hTPH promoter in pinealocytes (6-fold) and in PC12 cells
(2-fold). Three main cis-acting elements have been identified in a
large number of genes that are transcriptionally regulated by cAMP: the
consensus CRE sequence 5`-TGACGTCA-3`, which is found in the majority
of cAMP-responsive genes (38) , the AP-2 binding site
5`-(C/G)CCCAGGC-3`(39) , and the AP-1 binding sequence
5`-TGAGTCA-3`(40) . None of these elements are implicated in
the cAMP-dependent regulation of hTHP gene transcription. Unexpectedly,
we found that the inverted CCAAT box was involved in the cAMP induction
of the hTPH gene. These arguments are based on the following criteria.
First, progressive deletions of the hTPH promoter sequence showed that
a 22-bp region between positions -73 and -51 and containing
an inverted CCAAT box, an AP-4 site, and an imperfect direct repeat
(called RE2), was required to mediate the response of the hTPH promoter
to increased cAMP concentrations. Second, site-directed mutagenesis of
the inverted CCAAT box completely suppressed the induction of hTPH
promoter by cAMP when mutations in the AP-4 and in the imperfect direct
repeat RE2 had no effect. Third, the 22-bp region is able to confer
cAMP responsiveness to a heterologous (thymidine kinase minimal
promoter-luciferase) promoter that is not otherwise regulated by cAMP.
These results also excluded a role for the AP-2 binding site (at
position -100) as a putative cAMP-responsive site. The mouse TPH
promoter also contains an inverted CCAAT box, 55 nucleotides upstream
of the transcriptional initiation site. It would be interesting to
determine whether or not the cAMP responsiveness of the inverted CCAAT
box of the TPH gene is peculiar to the human species. The mouse TPH
gene promoter exhibits two additional CRE-like elements (-19 and
-157 nucleotides), differing from the canonical CRE by two
substitutions. Determination of the role of these sites awaits
experimental testing. A small number of cAMP-inducible genes,
including the mouse renin gene (ren1 All of these genes exhibiting unconventional
cAMP-responsive sites share a common characteristic in that they are
belatedly up-regulated after an increase in the intracellular cAMP
concentration. Indeed, the cAMP-regulated genes fall into two
categories. The major group consists of genes that are rapidly
regulated by cAMP and are cycloheximide-insensitive. For example, the
cAMP induction of somatostatin and acetyl-CoA carboxylase gene
transcription mediated by CRE or AP-2 elements, respectively, occurs
within minutes(38, 48) . The corresponding AP-2 and
CREB/ATF family of DNA binding proteins are constitutively synthesized
and are phosphorylated to transcriptionally active forms. In contrast,
the other group of genes is characterized by a delayed transcriptional
response to cAMP, which is inhibited by cycloheximide treatment. The
increase of gene transcription begins only after a delay of several
hours, suggesting that this class of cAMP-regulated genes requires
protein synthesis. The kinetic response of human TPH gene transcription
to cAMP treatment has not been determined, because no human cell lines
expressing the TPH gene are available. However, electrophoretic
mobility shift assays showed that the oligonucleotide containing the
inverted CCAAT box forms a specific DNA-protein complex giving bands of
similar intensity with nuclear extracts from untreated and cAMP-treated
rat pinealocytes. Thus, the inverted CCAAT box binding activity is
constitutive and does not appear affected by cAMP stimulation. This
suggests that the inverted CCAAT box-binding protein is permanently
present in the cells. It remains to be determined whether the factor
that binds to the inverted CCAAT box needs to be phosphorylated, like
the members of the AP-2 and CREB/ATF binding factor family. The
consensus CRE sequence does not inhibit the formation of the
DNA-protein complex between the wild-type TPH-CCAAT oligonucleotide
(Wt) and nuclear extracts from pinealocytes. The transcription factors
implicated in the regulation of the TPH gene by cAMP are, therefore,
likely to be different from those interacting with the CRE sequence.
cAMP induction of the G-protein Finally, Stehle et al.(49) have recently reported
that the pineal gland does not contain the CRE binding protein (CREB)
but does contain large amounts of ICER, a transcription repressor
factor belonging to the cAMP-responsive element modulator family
(CREM). ICER levels in the pineal gland exhibit a large circadian
fluctuation. It will therefore be of great interest to study whether
this factor and others, which remain to be isolated, contribute to the
stringent regulation of the TPH gene expression in the pineal gland.
The nucleotide
sequence(s) reported in this paper has been submitted to the
GenBank(TM)/EMBL Data Bank with accession number(s)
X83212[GenBank].
Volume 270,
Number 8,
Issue of February 24, 1995 pp. 3757-3764
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
TRANSCRIPTIONAL REGULATION BY cAMP REQUIRES A NEW MOTIF DISTINCT
FROM THE cAMP-RESPONSIVE ELEMENT (*)
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
)is the key enzyme in
the biosynthetic pathway of the neurotransmitter serotonin. In the
central nervous system, TPH is mainly expressed in the brainstem raphe
nuclei, where the corresponding neurons project onto almost every
region of the brain in a highly divergent manner(1) . Serotonin
has been shown to modulate numerous basal brain functions including
sleep, thirst, hunger, reproduction, arousal, and awakeness (2, 3) . The synthesis and activity of the TPH enzyme,
therefore, has to be tuned to very different physiological situations.
It has been shown that glucocorticoids and
Ca
/calmodulin kinase are able to increase TPH
activity (4, 5) and that cAMP treatment increases TPH
mRNA levels in primary cultures of raphe neurons(6) , but
little is known about the regulation of TPH expression in the central
nervous system.
-adrenergic receptors, which stimulate adenylate
cyclase(11) , thereby activating cAMP-dependent gene
transcription. Although TPH is not believed to be the rate-limiting
component of melatonin synthesis in the pineal gland, its activity and
mRNA level are also subject to a circadian rhythm (12, 13, 14) . Elevated concentrations of
intracellular cAMP have also been reported to increase TPH synthesis in
the pineal gland(13, 15) . Therefore, cAMP-dependent
signaling pathways appear to be a major intracellular relay for
environmental stimuli, able to modulate TPH expression at
transcriptional or post-transcriptional levels.
Plasmid Constructions
KSLuc, a promoterless luciferase vector with a transcription
terminator upstream of the single cloning site (HindIII) was
constructed by Faust and Catherin (
)and was used to test the
various sequences of the hTPH gene for promoter activity. The SalI-AvaI fragment of the hTPH promoter was isolated
from the hTPH genomic clone
12 (preceding article, (50) ).
This fragment contained the sequence from position -2117 to
+29 relative to the RNA initiation site. Four restriction
fragments of the promoter were subcloned into KSLuc upstream of the
luciferase reporter gene as follows. PL
was obtained by
ligating the blunt-ended SalI(-2117)-AvaI(+29) fragment into
the HindIII site (made blunt-ended) of KSLuc. Three additional
contructions (PL
, PL
, and
PL
), truncated at the 5`-end of the hTPH promoter
fragment, were produced using ScaI, SspI, and PvuII restriction sites, respectively. ScaI(-1402)-AvaI(+29), SspI(-724)-AvaI(+29), and PvuII(-51)-AvaI(+29) fragments were
each subcloned into KSLuc. The constructs PL
,
PL
, PL
, and PL
3`
corresponding to deletions at the 5`- or 3`-end of the 2146-bp hTPH
promoter fragment were obtained by PCR amplification using pairs of
hTPH-specific primers. PL
3` differs from PL
by the elimination of 29 nucleotides downstream of the TPH
promoter cap site. The PCR products were isolated from low melting
point agarose gels (1.5-3%) and inserted into KSLuc. The
sequences of the upstream oligonucleotides in constructs
PL
, PL
, PL
, and
PL
3` were, respectively, O
(5`-TTGGTTTGGAGAGAATGTCCA-3`), O
(5`-TTGTGTGGTTAAGGACGGCC-3`), and O
(5`-CTTCTCATTGGCCGCTGC-3`), and the sequence of the downstream
primer was either O
(5`-CGGGCGCCAGTAGGTGC-3`) (for
PL
, PL
and PL
) or
O
: 5`-GGCCGGCGGCCCCGCG-3` (for
PL
3`).
TK-Luc (a gift from Dr
Hughes de Thé; (16) ) contains a
thymidine kinase promoter fragment (-109 to +51) fused to
the firefly luciferase reporter gene and was used to subclone wild type
or mutated inverted CCAAT box oligonucleotides (Wt and M). The plasmids
Wtx3 and Mx3 contain, respectively, three direct tandemly repeated wild
type or mutated inverted CCAAT box oligonucleotides. The
oligonucleotide sequences used were as follows: Wt,
5`-CTTCTCATTGGCCGCTGCCCAG-3`; M, 5`-CTTCTCTTTAGCCGCTGCCCAG-3`.Site-directed Mutagenesis
Mutations were introduced into
hTPH promoter fragments by site-directed mutagenesis using PCR as
described by Higuchi(17) , with the upstream
(O
) and downstream (O
) primers
described above as the outside primers and appropriate nested
oligonucleotides carrying the desired mutation. The AP-4 binding site
(CAGCTG) of PL
was mutated to 5`-CTACTT-3` with the
oligonucleotide 5`-GGCCGCTGCCCTACTTCTCCGACGC-3` and its reverse
complement to give PL
. The same procedure was used to
produce mutations in the CCAAT box and the RE2 element separately and
together. Sequences were as follows: PL
(mutated CCAAT
box), 5`-CTTCTCTTTAGCCGCTGCCCAGCTG-3`; PL
(mutated RE2),
5`-CTTCTCATTGGCCTTTACCCAGCTG-3`; PL
(mutated RE2 and
CCAAT box), 5`-CTTCTCTTTAGCCTTTACCCAGCTG-3`. All mutations were
confirmed by sequencing with the Sequenase kit (U. S. Biochemical
Corp).Cell Culture and DNA Transfection
Pinealocyte Culture
Pineal cells were obtained
by the method of Buda and Klein(18) . Briefly, pineal glands
from newborn Wistar rats (2 days old), were removed, placed immediately
in Joklick medium, and then incubated for 30 min at 37 °C in the
same medium containing 0.25% trypsin. The pinealocytes were rinsed with
RPMI supplemented with 20% fetal calf serum, dissociated with a Pasteur
pipette, and collected by centrifugation. Then, the pinealocytes were
resuspended in Dulbecco's modified Eagle's medium
containing 10% fetal calf serum and were plated at a density of 0.25
10
in polyornithine-coated dishes (diameter, 1.6
cm). After 20 h of culture, pineal cells were transfected with the
DNA-lipopolyamine complex according to the method of Loeffler et
al.(19) . Briefly, a DNA/lipopolyamine transfection
solution containing 0.5 µg of DNA (0.375 µg of the DNA of the
plasmid to be tested and 0.125 µg of RSV-CAT) and 5 µg of
lipopolyamine (Transfectam) was added to the cells in serum-free
Dulbecco's modified Eagle's medium. The cells were
incubated for 2 h and then washed and cultured in the maintenance
medium.PC12 Cell Culture
PC12 cells were grown in RPMI
1640 supplemented with 10% horse serum and 5% fetal calf serum. For
transient assay experiments, 1 10
PC12 cells were
resuspended in 0.15 ml of serum-free RPMI 1640 and transfected by
electroporation using a Bio-Rad gene pulser with 5 µg of each DNA
of plasmid to be tested, 3 µg of carrier DNA, and 2 µg of
RSV-CAT plasmid to assess transfection efficiency. The cells received a
single electrical pulse at 200 V delivered from a total capacitance of
960 microfarads and were placed in serum-containing medium.Treatment with 8-Bromo-cyclic AMP (8-Br-cAMP)
To
study the effect of an increased intracellular cAMP level on hTPH
promoter activity, pinealocytes and PC12 cells were treated with 1
mM 8-Br-cAMP 24 h after transfection with hTPH
promoter-luciferase fusion constructs and were harvested 20 h later for
the luciferase assay.Luciferase and Chloramphenicol Acetyltransferase
Assays
Pinealocytes and PC12 cells were harvested in 1 and 5 ml of
phosphate-buffered saline, respectively, centrifuged, and resuspended
in 200 µl of lysate buffer (25 mM Tris-phosphate, pH 7.8,
8 mM MgCl
, 1 mM dithiothreitol, 1 mM EDTA, 1% Triton, 15% glycerol, 1% bovine serum albumin). Cell
debris was removed by centrifugation. Luciferase assays were carried
out using a Lumat LB9501 (Berthold) luminometer in 150 µl of
reaction mixture (0.08 mM luciferin, 0.1 mM ATP, 25
mM Tris-phosphate, pH 7.8, 8 mM MgCl
, 1
mM dithiothreitol, 1 mM EDTA, 1% Triton, 15%
glycerol). Preliminary studies indicated that the luciferase activity
in the cell lysate of one transfection was in the linear range of the
assay. The luciferase activity resulting from each hTPH promoter
construct was normalized to the CAT activity resulting from the
co-transfected RSV-CAT vector. CAT assays were performed using the
liquid scintillation counting method. The amount of the cell lysate
used was always in the linear range of the CAT assay, as assessed using
a reference CAT preparation.Preparation of Nuclear Extracts and Electrophoretic
Mobility Shift Assay
Nuclear extracts from pinealocytes and PC12 cells were
prepared according to the method of Schreiber et
al.(20) . The concentration of protein was determined by
the Bradford method and was between 1 and 3 mg/ml in nuclear extract
preparations. The double-stranded TPH-CCAAT oligonucleotide (Wt) was
labeled at the 5`-end by incubation with
[
-
P]ATP and T4 polynucleotide kinase. The
binding reactions was performed at 4 °C for 20 min with 0.2 ng of
labeled TPH-CCAAT probe, 0.2 µg of poly(dI-dC), and 1 µg of
nuclear extract, in the following buffer: 14 mM Hepes, pH 7.8,
80 mM KCl, 0.2 mM EDTA, 0.2 mM EGTA, 35
µg/ml bovine serum albumin, 10% glycerol. Unlabeled double-stranded
oligonucleotides (TPH-CCAAT (Wt), mutated TPH-CCAAT (M), CRE-TH, and
POU-IgH) at 250-fold molar excess were used for competition
experiments. DNA-protein complexes were separated by electrophoresis on
a 5% polyacrylamide gel in 0.25 Tris borate/EDTA at 10 V/cm.
The oligonucleotide sequences used were as follows: Wt,
5`-CTTCTCATTGGCCGCTGCCCAG-3`; M, 5`-CTTCTCTTTAGCCGCTGCCCAG-3`; CRE-TH,
5`-GAGGGGCTTTGACGTCAGCCTGGCCT-3`; POU-IgH,
5`-CTGGGTAATTTGCATTTCTAAA-3`.
Functional Characterization of the Human Tryptophan
Hydroxylase Promoter in Cell Cultures
A hTPH genomic DNA clone
(
12), containing the entire 5`-noncoding region and a 2-kb
fragment upstream of the TPH RNA start site was isolated by screening a
human genomic library (preceding article, (50) ). The
nucleotide sequence of the 5`-flanking region of the hTPH gene was
determined (Fig. 1) and revealed the presence of several
canonical cis-regulatory elements including a ``TATA
box''(21, 22) , a ``CCAAT box'' in an
inverted orientation (ATTGGCC; (22) ) and a CCACCC
element(23) , which are located at -29 nucleotides,
-62 nucleotides and -100 nucleotides, respectively,
relative to the transcription start site. Upstream and close to the
hTPH promoter cap site, there are other putative binding sites for
transcription factors, some of which are required to promote
constitutive or induced transcription from many viral or cellular
eukaryotic promoters (three potential GC boxes, C/EBP, AP2 and AP4
binding sites, and two 9-bp imperfect direct repeats, RE1 and RE2).
) was used to
transfect primary cultures of newborn rat pinealocytes. The
promoterless luciferase vector (KSLuc) was similarly introduced into
these cells as negative control of transfection. The resulting
luciferase activity was normalized with respect to the CAT activity
expressed from a co-transfected plasmid carrying an RSV promoter-CAT
gene fusion (RSV-CAT; (24) ). The 2,117-bp TPH
promoter-luciferase construct, in the sense orientation
(PL
), efficiently directed luciferase expression,
whereas the same fragment, in the reverse orientation
(PL
), did not (Fig. 2). Thus, the 2,117-bp
genomic fragment functioned as a promoter in an in vitro assay. To further characterize the regulatory domains of the hTPH
promoter that are involved in the basal transcriptional activity of
this gene, several deletions were generated, either by enzymatic
restriction (PL
and PL
) or by PCR
amplification (PL
, PL
, and PL
)
and inserted upstream of the luciferase reporter gene. The luciferase
activity expressed by constructions PL
, PL
PL
, PL
and PL
, which
contained 1,402, 724, 252, 204, and 73 bp of the hTPH 5`-flanking
region, respectively, showed that deletions of fragments in the region
between positions -2,117 bp (PL
) and -252 bp
(PL
) had no significant effect on hTPH promoter activity (Fig. 2). Longer deletions led to a large decrease of the
transcriptional activity. Thus, the proximal 252-bp region upstream of
the hTPH mRNA initiation site contains information required for
promoter function. The transcriptional activity of the shortest
construct containing the -73 to +29 bp fragment
(PL
) was 85% lower than that of PL
but
5-8-fold higher than the background level obtained with the
promoterless vector (KSLuc) or the construct PL
.
corresponds to the hTPH promoter fragment of 2,117
bp inserted into the promoterless luciferase vector (KSLuc) in the
reverse orientation. Data are mean ± S.E. (bars) values
from at least three independent experiments done in triplicate. Bottom, schematic representations of the fragments of the hTPH
promoter.
containing the hTPH
promoter fragment of 252 bp expressed twice the luciferase activity of
constructs possessing longer hTPH promoter fragments (PL
and PL
). This suggests the presence of a weak
tissue-specific repressor between positions -724 and -252
on the hTPH gene promoter (Fig. 2).Transcriptional Activity of the Human TPH Gene Is
Regulated by Cyclic AMP
Intracellular cAMP is a major second
messenger in pineal gland and is thought to be a key regulator of TPH
gene activity. We therefore investigated whether the hTPH promoter can
be regulated by a cAMP-dependent mechanism. Pinealocytes were
transfected either with the PL
plasmid or control
plasmid (KSLuc) and treated with 1 mM 8-Br-cAMP for 20 h. The
luciferase activity of each construct in the presence and absence of
8-Br-cAMP was compared. Plasmid PL
showed a 5-fold
increase in luciferase activity after 8-Br-cAMP treatment, whereas no
modification of luciferase activity was obtained with the control
plasmid (Fig. 3A). Usually, cAMP-regulated genes
contain a consensus cis-acting element close upstream of the RNA start
site, which mediates the induction of transcriptional activity by cAMP.
The hTPH promoter does not contain the canonical CRE (5`-TGACGTCA-3`),
but a putative AP-2 binding site (5`-GCCCAGCC-3`) was found at position
-100, differing from the consensus sequence, (5`-CCCCAGGC-3`) by
two mismatches. To delineate the 5`-end of the TPH cAMP-regulatory
region and to determine whether the AP-2 binding site is involved in
this response, several 5`-deletions of the hTPH promoter
(PL
, PL
, PL
,
PL
, and PL
) were analyzed. The hTPH promoter
deletion that removes the AP-2 binding site corresponds to the
construct PL
. Pineal cells were transfected with each of
these constructs and were treated or not treated with 8-Br-cAMP. For
all constructions tested, including PL
(-73 to
+29), 8-Br-cAMP caused a reproducible 4-7-fold induction of
luciferase activity as compared with the corresponding untreated
transfected cells (Fig. 3A). Thus the AP-2 element is
not involved in the hTPH 8-Br-cAMP responsiveness, and the motif
confering this inducibility is presumably located either within the 73
bases upstream of the hTPH RNA start site or in the first 29 bases of
the 5`-noncoding region of the hTPH.
; t test).
, PL
, and
PL
constructs (corresponding to the AP-4 binding site,
RE2 element and CCAAT box, respectively). PL73BC contains mutations in
two elements: the CCAAT box and RE2.

![]()
and
PL
; Fig. 4). PL
![]()
differed from PL
by the elimination of the +2
to +29 bp region. PL
plasmid contained only 51 bases
upstream of the cap site and lacked both the inverted CCAAT box and the
AP-4 binding site. Transfection experiments in pinealocytes with
PL
![]()
gave the same basal luciferase
activity and the same induction by 8-Br-cAMP as did PL
,
indicating that there were no cis-elements in the DNA sequence between
+2 and +29 bp required for hTPH promoter activity or cAMP
regulation (Fig. 3B). However, there was no increase of
the luciferase activity after 8-Br-cAMP treatment and a decrease of the
basal level of luciferase activity in pinealocytes transfected with
PL
, although the transcriptional activity was
2-3-fold higher than the KSLuc background. Therefore, these
results suggested that the cAMP-regulatory motif is located between
-73 and -51 of the human TPH 5`-flanking region.An Inverted CCAAT Box Identified by Site-directed
Mutagenesis Is Required for the 8-Br-cAMP Responsiveness of the Human
TPH Gene
Three putative motifs entirely cover the 22 nucleotides
(between nucleotides -73 and -51) required for the cAMP
responsiveness: an inverted CCAAT box, an AP-4 binding site, and a
9-base imperfect direct repeat (RE2). We investigated the role of each
of these three elements on the induction of hTPH gene expression by
8-Br-cAMP in pinealocytes and PC12 cells by site-directed mutagenesis (Fig. 4). Synergy between the AP-4 and AP-1 binding sites has
been reported to contribute to the cAMP responsiveness of the human
proenkephalin promoter(25) . To assess whether the AP-4 binding
site is involved in the transcriptional regulation of the hTPH promoter
by cAMP, the 5`-CAGCTG-3` AP-4 binding site sequence was mutated to
5`-CTACTT-3`. The resulting construct (PL
) was used to
transfect pinealocytes. The luciferase activity of PL
was
almost identical to that of PL
in control conditions and
after 8-Br-cAMP treatment (Fig. 5A). Thus, the AP-4
binding site did not appear to have any role in the induction of the
hTPH promoter activity by cAMP. Mutations of the 9-base imperfect
direct element (RE2; 5`-CCGCTGCCC-3`) to 5`-CCTTTACCC-3` and of the
inverted CCAAT box (5`-ATTGG-3`) to 5`-TTTAG-3` were similarly tested
both independently and together. The mutated construct affecting both
the inverted CCAAT box and the RE2 motif in the hTPH promoter sequence
(mutant PL
) completely inhibited the induction of
luciferase activity after 8-Br-cAMP treatment, showing that one or both
of the two elements are involved in this response (Fig. 5A). The luciferase activity of mutant PL
where only the RE2 element is modified was similar to that of
PL
, suggesting that the RE2 motif is not involved in the
response to cAMP. In contrast, the mutation disrupting the inverted
CCAAT box (mutant PL
) completely abolished the cAMP
responsiveness. Analogous experiments with the four mutated constructs
were performed in PC12 cells and confirmed these findings (Fig. 5B). Thus, these results identified the inverted
CCAAT box as being involved in the cAMP inducibility of the hTPH
promoter.
in the absence of 8-Br-cAMP. Data
are mean ± S.E. (bars) values from at least three
independent experiments done in triplicate. A, TPH
promoter-luciferase fusion plasmids were introduced into rat
pinealocyte cultures and exposed or not exposed to 1 mM 8-Br-cAMP. B, TPH promoter-luciferase fusion plasmids
were introduced into 8-Br-cAMP treated and untreated PC12 cells. Bottom, the tables give the values of the relative
luciferase activity in the absence of 8-Br-cAMP and the -fold induction
of the luciferase activity after 8-Br-cAMP treatment (*, p < 10
; t test).
The Inverted CCAAT Box Interacts with DNA-binding
Proteins
To further analyze the interaction of the inverted
CCAAT box of the hTPH gene with cAMP-dependent factors, we performed
electrophoretic mobility shift assays (EMSAs) using nuclear extracts
prepared from PC12 cells and pinealocyte primary cultures. The
double-stranded
P-labeled TPH-CCAAT oligonucleotide (Wt)
was incubated with nuclear extracts from 8-Br-cAMP-treated or untreated
pineal cells, and the resulting protein-DNA complexes were analyzed by
nondenaturing polyacrylamide gel electrophoresis and visualized by
autoradiography (Fig. 6). EMSA demonstrated that 1 µg of
protein extract from pinealocyte nuclei contained a factor able to bind
to probe Wt, producing a single retarded band (named complex 1; Fig. 6, lane 2). The same DNA shift pattern was
obtained with nuclear extracts from 8-Br-cAMP-treated pineal cells (lane 3), suggesting that the transcription factor(s) bind to
this DNA sequence with or without cell stimulation by cAMP. The
specificity of this complex was tested by adding a 250-fold molar
excess of either unlabeled TPH-CCAAT oligonucleotide (Wt) or mutated
TPH-CCAAT oligonucleotide (M) to the binding reaction (Fig. 6, lanes 4 and 5). The competitive displacement of the
retarded probe was observed only with the Wt unlabeled TPH-CCAAT
oligonucleotide. Then, these results indicated that complex 1 is formed
by sequence-specific binding and that the mutated bases within the
inverted CCAAT box are necessary for protein-DNA interaction. Finally,
we tested whether the nuclear factors composing this complex could also
bind a functional CRE sequence; we added an excess of unlabeled
oligonucleotide containing the CRE consensus sequence of the rat
tyrosine hydroxylase gene(26) , to compete for the binding of
pinealocyte nuclear proteins to the labeled TPH-CCAAT probe (Wt). The
addition of a 250-fold molar excess of unlabeled CRE-TH did not
displace the binding of factors from the probe, demonstrating that
transcriptional factors that interacted with the inverted CCAAT box did
not belong to the CRE binding protein family (Fig. 6, lane
6). Gel retardation assays using nuclear extracts prepared from
PC12 cells gave a pattern of specific bands similar to that obtained
with the pinealocytes. EMSA with untreated (data not shown) and
8-Br-cAMP-treated PC12 nuclear extracts showed one major shifted band
(named 1) and two minor bands (2 and 3) (Fig. 7, lane
2). A 250-fold molar excess of unlabeled TPH-CCAAT oligonucleotide
(Wt), mutated TPH-CCAAT oligonucleotide (M) or an unrelated
oligonucleotide (the consensus POU IgH sequence; (27) )
completely displaced complexes 2 and 3 (Fig. 7, lanes
3, 4, and 6), suggesting that the formation of
these two complexes was not caused by a sequence-specific binding. In
contrast, the lowest mobility complex (complex 1) was displaced only in
the presence of 250-fold molar excess of the unlabeled TPH-CCAAT
oligonucleotide Wt (Fig. 7, lane 3), indicating that
only complex 1 is caused by sequence-specific binding. In addition, as
seen with the pinealocyte extracts, no competition with the factor(s)
binding the probe Wt was observed by adding of a molar excess of the
CRE-TH oligonucleotide. Thus, the effects of 8-Br-cAMP on TPH gene
transcription do not appear to be mediated by increasing the amount of
cellular factors that bind to this regulatory sequence.
The Inverted CCAAT Box Motif of the TPH Gene Regulates a
Heterologous Promoter in cAMP-treated Pinealocytes
To test
whether the inverted CCAAT box module can confer cAMP responsiveness to
a heterologous promoter, a 3-fold tandem repeat TPH-CCAAT
oligonucleotide containing the wild type inverted CCAAT box motif (Wt)
was inserted upstream of the minimal thymidine kinase promoter fused to
the luciferase gene (
TK-LUC). The resulting construct was called
Wtx3. In addition, we also inserted three copies of the mutated
TPH-CCAAT oligonucleotide (M) in the inverted CCAAT box sequence as a
putative negative control (Mx3). The sequence of the two
oligonucleotides was identical to those of oligonucleotides used for
the EMSA (see above). Pinealocytes were transiently transfected with
plasmids Wtx3 and Mx3 and treated or not treated with 8-Br-cAMP. The
basal activity of these two plasmids was about 3-fold higher than the
parental plasmid
TK-Luc (data not shown). After treatment with
8-Br-cAMP, the level of luciferase activity was 2-fold higher in
pinealocytes transfected with the wild type (Wtx3) than with the
mutated (Mx3) (Fig. 8). Thus, the 22-base sequence located
between nucleotides -73 and -51 of the TPH promoter can
function in a heterologous context. The cAMP induction of luciferase
activity in pineal cells transfected with the construct Wtx3 was weaker
than that of a construct that contained the TPH promoter fused to the
luciferase gene. This suggests that the activity of the inverted CCAAT
box may be affected by the flanking sequences.
TK-Luc (see
``Materials and Methods'') where, respectively, three tandem
repeat sequences of the wild type inverted TPH-CCAAT box
oligonucleotide (Wt) and the mutated inverted TPH-CCAAT box
oligonucleotide (M) had been inserted upstream of an enhancerless
thymidine kinase promoter fused to the luciferase gene. Luciferase
activity is expressed as relative light units (RLU) normalized
to CAT activity in the same cell extract (RSV-CAT) expressed in
milliunits. Bottom, the table gives the values of the
basal level of the reporter genes expression (RLU/mUCAT) and the -fold
induction of the reporter genes activity after 8-Br-cAMP
treatment.
could account for the
reduction of TPH promoter activity. Indeed, the CCACCC element of the
porphobilinogen deaminase gene interacts with the CCAAT box to modulate
basal transcription(32) . A CCACCC element is also required for
the basal transcription of the tryptophan oxidase gene (33) and
of the
-globin gene, in combination with the GATA binding site in
the latter case(34) . The other cis-regulatory elements of the
hTPH gene were not further characterized.
, ren2
), the human myelin basic protein gene, and
some of the steroid hydroxylase genes, bear cAMP-inducible sequences
dissimilar to the CRE, AP-2, and AP-1 binding
sites(41, 42, 43, 44) . For example,
a GA box element, which binds SP1-like proteins, confers cAMP
responsiveness to the bovine P-450
gene(45) . A
consensus GC box is also present in the region required for the
transcriptional induction of the human steroid 21-hydroxylase gene
(P-450
) by cAMP, but this motif has not been definitively
shown to be the cAMP-responsive element (43) . The diversity of
cAMP-responsive sites has also been extended by the identification in
the human myelin basic protein gene promoter of a sequence
(5`-CACTTGATC-3`) sharing no identity with any known cis-acting
element(42) . Finally, the CCAAT box motif has been implicated,
either directly or indirectly, in the cAMP inducibility of several
genes. Muro et al.(46) reported that the cAMP
responsiveness of the human fibronectin gene required cooperative
interaction between a CRE and a CCAAT box. In addition, it has been
demonstrated that the CCAAT box sequence alone mediates the regulation
of G-protein ![]()
subunit gene transcription by cAMP (47) . Indeed, this motif inserted upstream of a heterologous
promoter is able to confer cAMP inducibility. Therefore, cis-acting
elements, which were initially believed to contribute only to basal
transcription (CCAAT box, AP-2 binding site, GC box), have now been
implicated in the modulation of gene transcription by intracellular
signals.![]()
subunit gene
(G![]()
) also required a CCAAT box motif but in the sense
orientation(47) . It has been demonstrated that the
transcription of the G![]()
gene is induced only after
several hours of cAMP treatment (6 h) and that the CCAAT box binding
activity was both constitutive and increased by cAMP treatment, in
contrast to what was found for the inverted CCAAT box of the hTPH gene.
Therefore, the mechanisms by which cAMP regulates TPH and the
G![]()
gene transcription seem to be different. The
purification and identification of the trans-acting factor(s) that bind
to this regulatory element would give further insight into the
cAMP-dependent mechanisms regulating hTPH gene transcription.
)
)
We thank E. Jean-Gilles, I. Brunet, and D. Samolyk for
technical assistance and A. Lamouroux and N. Faucon Biguet for critical
comments. A special thanks to P. Vernier for many helpful suggestions
and critical reading of this manuscript.
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
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