|
Volume 270,
Number 8,
Issue of February 24, 1995 pp. 3894-3899
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
AFAP-120
A VARIANT FORM OF THE Src SH2/SH3-BINDING PARTNER AFAP-110 IS
DETECTED IN BRAIN AND CONTAINS A NOVEL INTERNAL SEQUENCE WHICH BINDS TO
A 67-kDa PROTEIN (*)
(Received for publication, October 26, 1994; and in revised form, December 2, 1994)
Daniel C.
Flynn (§),
,
Thomas C.
Koay
,
Caroline
G.
Humphries
,
Anne C.
Guappone
From the Mary Babb Randolph Cancer Center and the Department of Microbiology
and Immunology, West Virginia University, Morgantown, West Virginia
26506-9300
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS and DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
SH2 and SH3 domains have been characterized as functional
domains that mediate protein-protein interactions in signal
transduction. Recently, the cDNA sequence of a novel Src- and
Fyn-binding protein called AFAP-110, for Actin-Filament Associated
Protein-110 kDa, was reported. This protein was distinctive in that it
is both an SH2 and SH3 binding partner for the non-receptor tyrosine
kinases Src and Fyn. Here, we report the characterization of an
alternatively processed form of AFAP-110 that encodes an additional 258
base pair (bp) of open reading frame. Transient expression of this
full-length clone reveals a molecular mass of 120 kDa. Western blot
analysis indicate that a larger 120-kDa variant of AFAP-110 can be
detected in brain and is not detectable in any other tissues examined.
Northern blot analysis indicate that the novel 258-bp insert can be
detected in brain RNA but not chick embryo fibroblast RNA. We propose
the name AFAP-120, for Actin Filament-Associated Protein-120 kDa.
Expression of the 258-bp novel insert (NINS) as a glutathione S-transferase-encoded fusion protein permits adsorption of a
67-kDa protein from tissue lysates. Deletion analysis of the NINS
indicates that the interaction with p67 can be attributed to a
proline-rich motif that resembles an SH3-binding motif. We hypothesize
that AFAP-120 facilitates interactions in brain between SH2/SH3
signaling proteins and actin filaments and that a proline-rich motif in
the NINS may exist to facilitate additional interactions between
cellular proteins in brain and actin filaments.
INTRODUCTION
SH2 and SH3 domains are recognized as conserved functional
domains found in a variety of proteins known to play an important role
in signal transduction, including the src family of
nonreceptor tyrosine kinases, phospholipase C- , and
phosphatidylinositol 3-kinase(1) . The SH2 domain mediates
protein-protein interactions by recognizing and binding to peptide
motifs that contain a phosphotyrosine residue(1) . The function
of the SH3 domain is less clear(2) . This domain, unlike the
SH2 domain, is also found in proteins known to interact with the
cytoskeleton and cell membrane(3, 4) . Hence, the SH3
domain has been hypothesized to mediate protein-protein interactions
with these cellular structures(1) . Recent studies indicate
that the SH3 domain may also serve to link proteins to ras signaling
pathways(5, 6, 7, 8) . Evidence for
this association was originally pointed out in the cloning of the abl SH3-binding protein, 3BP-1(9). This polypeptide contains
sequences distinct from its SH3-binding motif which are homologous to
the family of GTPase activating proteins that act upon the rac/rho family of small G-proteins. Additionally, recent evidence
indicates that rac and rho control membrane ruffling
and stress fiber organization, respectively(10, 11) .
Thus, these data indicate a link between SH3-containing proteins, ras signaling pathways, and cytoskeletal associations. Recently, we described the predicted amino acid sequence of a novel
Src-binding protein, called AFAP-110(12) . This novel
cytoskeletal-associated protein was distinctive in that it could be
independently adsorbed with bacterial encoded fusion proteins
expressing either the SH2 or SH3 domains of pp60 or pp59 (12) . Furthermore, AFAP-110
encodes predicted SH2- and SH3-binding motifs(12) . These data
indicate that AFAP-110 is both an SH2- and SH3-binding partner for Src
and that it is capable of forming a stable interaction with more than
one member of the Src family of nonreceptor tyrosine kinases. It was
hypothesized that one possible function of AFAP-110 was to facilitate
interactions between SH2/SH3-containing proteins and the
cytoskeleton(12) . These stable complexes may be significant as
the binding of AFAP-110 to activated forms of Src correlate strongly
with transformation(13, 14) . Activated variants of
Src that contain deletions in the SH2 or SH3 domains are both defective
for transformation and unable to form a stable complex with
AFAP-110(13, 14) . These data indicate that one
criterion for transformation would require intact SH2 and SH3 domains
to facilitate interactions with SH2 and SH3 cellular binding partners.
Because AFAP-110 is associated with actin
structures(12, 13, 15) , and the concomitant
disruption of actin cables is a hallmark of transformation by
Src(16, 17) , then AFAP-110 could play an important
role in modulating the effects of Src on the cytoskeleton. In addition,
AFAP-110 may represent an important component in the pathway of signal
transduction through c-Src and c-Fyn. In this report, we describe
the isolation and characterization of a variant form of the Src
SH2/SH3-binding protein AFAP-110. This larger variant, called AFAP-120,
has a molecular mass of 120 kDa and encodes a novel domain containing
86 amino acids placed near the carboxyl terminus which do not disrupt
the downstream reading frame homologous to AFAP-110. Northern and
Western blot analysis demonstrate that this larger variant can be
detected in brain. AFAP-120 retains predicted SH2- and SH3-binding
motifs and can be efficiently adsorbed by GST -SH3 created
from c-Src. The novel 86-amino-acid insert encodes a unique sequence
that contain a proline-rich region resembling an SH3-binding motif.
Expression and immobilization of the NINS as a GST-encoded fusion
protein (GST-NINS) reveals that a 67-kDa protein from brain lysates
will associate with GST-NINS, but not to GST alone. This association
requires the integrity of a proline-rich motif in the NINS. We
hypothesize that AFAP-120 may be an important binding partner for c-Src
in brain and that the NINS may facilitate additional interactions
between cellular proteins and actin filaments.
MATERIALS AND METHODS
cDNA Construct Encoding AFAP-120A gt11
cDNA expression library (Clontech, Palo Alto, CA) created from the mRNA
of a 10-day-old chick embryo was screened as described
previously(12) . A single cDNA clone, p2.1, was isolated by
hybridization using an amino-terminal probe(12) . Phage from
this positive plaque was purified by four rounds of plaque
purification. The cDNA insert was isolated and subcloned into
pBluescript KS+ (Stratagene, San Diego, CA). DNA sequence
analysis was carried out using the dideoxy sequencing
strategy(24) . Sequence analysis of clone p2.1 uncovered a
sequencing error in the fibroblast homologue AFAP-110(12) . Two
codons were omitted that predict an Asn-Asn after Ser ,
rather than a single Ile at position 359, and an additional Lys residue
is predicted after Gly (12) . These amino acids
are conserved in clone p2.1 and have no effect on the SH2- or
SH3-binding motifs predicted for AFAP-120 or AFAP-110. The sequence for
AFAP-120 as well as the corrected sequence of AFAP-110 (accession
number L20303) have been communicated to GenBank. A full-length version
of AFAP-120 was constructed by substituting the BglII-BglII fragment of p2.1 into the cDNA encoding
AFAP-110. This clone is referred to as FLC2.1. DNA and amino acid
sequence were analyzed by using the sequence analysis software DNASIS
and PROSIS (Hitachi software, Brisbane, CA).The pCMV-1 vector was
obtained from the laboratory of Dr. E. H. Humphries and was used to
express cloned proteins in COS-1 cells via the CMV
promoter(25) . The cDNAs encoding AFAP-110 and the FLC2.1 were
excised from pBluescript ks+ with HincII and SmaI digestion and subcloned into pCMV-1 via the unique SmaI restriction site in the multiple cloning site.
Cell CulturePrimary cultures of chick embryo
fibroblast (CE) cells were prepared from day 9 embryos (Spafas,
Norwich, CT) and cultured as described previously(26) . COS-1
cells were also maintained in DMEM containing 5% fetal calf serum and
1% penicillin/streptomycin. Transfection of pCMV-1 plasmid constructs
into COS-1 cells was carried out according to the method of Chen and
Okayama (27) .
Protein Characterization and AnalysisThe
polyvalent antibody (Ab) F1 (12) and monoclonal antibody (mAb)
4C3 (28) were prepared as described previously. Cell lysates
were prepared using modified RIPA as described previously(26) .
Tissue lysates were obtained from either a day 16 chick embryo (chick
brain) or a 7-week-old adult chicken. Immune complexes were isolated by
adding either 1.2 µg of Ab F1 or 1 µl of mAb 4C3 ascites to 500
µg of RIPA cell lysate (1 µg/µl) containing protease
inhibitors (50 µg/ml leupeptin, 1 mM sodium vanadate, 0.5%
aprotinin, and 1 mM phenylmethylsulfonyl fluoride) for 2 h at
4 °C, followed by immobilization of the immune complex with 100
µl of protein A-sepharose (Pharmacia), 50% (w/v), for 2 h at 4
°C. The immobilized immune complexes were washed and resuspended in
boiling Laemmli sample buffer. Western transfer and Western blot
analysis with Ab F1 or mAb 4C3 were done as described
previously(26) . Bound primary antibody was quantitated using a
horseradish peroxidase-conjugated secondary antibody followed by
detection using chemiluminescence.The novel 258-bp insert is
surrounded by sequence that define Sau3AI sites. This Sau3AI fragment encodes Ser to Ser and does not include the three carboxyl-terminal amino acids of
the NINS that predict Val , Ser , or
Gln . This sequence was subcloned into the novel BamHI site in pGEX-2T and transfected into DH5- bacteria.
This GST-encoded fusion protein (GST-NINS for NINS) was
expressed as described previously (12) . The preparation of
bacterial lysates containing these fusion proteins, and immobilization
on glutathione-Sepharose beads, were done according to the method of
Smith and Johnson(29) . Immobilized GST fusion proteins were
incubated with 500 µg of chick embryo day 16 brain tissue lysate
for 1.5 h at 4 °C. The bound proteins were washed two times with
RIPA and two times with Tris-buffered saline, pH 7.5. Adsorbed brain
tissue proteins were removed by incubating the beads in boiling 2
Laemmli sample buffer for 2 min, centrifuging, and resolving
the supernatant by 8% SDS-PAGE. The resolved brain lysate proteins were
analyzed by ammoniacal silver staining according to the method of
Harlow and Lane(32) .
Northern Blot AnalysisTotal cellular or tissue
RNA was prepared by the method of Chomczynski and Sacchi(30) .
Twenty µg of RNA was mixed in a 20-µl volume of 20 mM MOPS (Sigma), pH 7.0, 5 mM sodium acetate, 1 mM EDTA, 50% formamide, and 2.2 M formaldehyde, were
resolved on a 1.5% agarose gel (SeaKem ME, FMC BioProducts),
transferred to Immobilon-N membrane (Millipore Corp., Bedford, MA), and
hybridized with a nick-translated DNA probe using
[ P]dCTP (ICN Biochemicals, Irvine, CA).
RESULTS and DISCUSSION
Isolation of a cDNA Clone Encoding a 258-bp Insert in
AFAP-110AFAP-110 cDNA clones were isolated from gt10 and
gt11 cDNA libraries generated from the mRNA of day 10 whole chick
embryos and from chick embryo fibroblast (CE) cells, as described
previously (12) . One of the 5` clones isolated from the gt11
whole chick embryo library (p2.1) encoded a 2068-bp cDNA clone that
contained a 258-bp novel insert (NINS) located between AFAP-110 coding
sequence encoding bp 1549 and 1550(12) . A 247-bp DNA fragment
corresponding to the NINS was isolated by Sau3AI digestion and
used to probe the same gt11 library. Two additional cDNA clones, p8.1
and p6.1, were isolated that correspond to the 3` coding and noncoding
sequence common to AFAP-110 (Fig. 1A). Clone p8.1
begins at bp 1444 that is predicted for AFAP-110 and encodes sequence
homologous to clone p2.1, including the NINS. The clone p8.1 terminates
at bp 2252, which is 59 bp downstream of the 3` termination codon
predicted for AFAP-110. Clone p6.1 begins further upstream at bp 1327,
predicted for AFAP-110, and encodes the NINS. Clone p6.1 terminates at
bp 2129 within the coding region common to AFAP-110 and clone p2.1. The
fact that the NINS was detected in three different cDNA clones and
exists between sequence that define AFAP-110 indicate that the NINS is
an authentic biological entity.
Figure 1:
Analysis of clone p2.1 and construction
of a full-length version of clone p2.1. A, clone p2.1 was
sequenced on both strands. The cDNA sequence of the NINS was isolated
by Sau3AI digestion and used to isolate two additional clones,
p8.1 and p6.1, which were sequenced completely on one strand. Clones
p8.1 and p6.1 encode the NINS, as well as sequence identical to
AFAP-110 and clone p2.1. A full-length version of clone p2.1 (FLC2.1)
was created by subcloning the BglII to BglII fragment
of clone p2.1, which encodes the novel 258-bp insert, into the cDNA
encoding AFAP-110. This BglII to BglII fragment
encodes Leu to Asp , predicted for clone
p2.1. B, the predicted amino acid sequence of AFAP-120 from bp
1453 (common to AFAP-110 and AFAP-120) to bp 1902 (bp 1644 for
AFAP-110). The cDNA sequence of the novel 258-bp insert is underlined, along with the predicted amino acid sequence.
Sequence information that is not underlined represents sequence common
to both AFAP-110 and clone p2.1. A proline-rich region is highlighted in the box defining Pro to
Pro .
The 258-bp insert encodes 86 amino
acids and retains the integrity of the serine residue encoded at amino
acid position 510 (Fig. 1B). In addition, the 258-bp
insert does not disrupt the downstream reading frame predicted from the
AFAP-110 encoded phenylalanine 511 (Fig. 1B).
Interestingly, a second variant cDNA has been isolated that diverges
from AFAP-110 cDNA sequence at exactly the same bp (bp 1549); however,
this variant encodes 19 novel amino acids after serine 510, followed by
an opal stop codon and 3`-noncoding sequence. ( )Because two
different variants of AFAP-110 have been isolated that diverge at
exactly the same site, we speculate that AFAP-120 may have arisen by
alternative splicing. The predicted amino acid sequence of the 258-bp
insert revealed a novel sequence that was not homologous with any
proteins in the GenBank data base. The 86-amino-acid sequence contains
a disproportionate number of serine residues (15 serine residues, or
17% of the insert) and a short proline-rich motif (boxed). To
characterize the NINS, a full-length version of this variant was
created by substituting the BglII to BglII fragment
of p2.1 (bp 1162-2056) into the same BglII to BglII restriction site of full-length AFAP-110 (Fig. 1A). This clone is referred to as full-length
clone p2.1 (FLC2.1) and encodes 723 amino acids with a predicted
molecular mass of 81,458 Da.
Chick Brain Expresses a 120-kDa Variant of
AFAP-110The 86 amino acids have a predicted molecular mass of
9534 Da. Therefore, it was hypothesized that the protein encoded by
FLC2.1 would have a molecular mass of 120 kDa. Because clone p2.1 was
isolated from a gt11 library created from the RNAs of a whole
chick embryo, it was further hypothesized that a variant form of
AFAP-110 of 120 kDa might be detected in a specific organ by Western
blot analysis. Tissues were extracted from a 7-week-old chicken, lysed
in RIPA, 25 µg of cellular proteins resolved by 8% SDS-PAGE, and
transferred to polyvinylidene fluoride by Western transfer. The
transfer was then probed with mAb 4C3 (28) . The data reveal
that all tissues contain a 110-kDa protein that is AFAP-110 (Fig. 2, lanes 1-11). Liver and kidney (lanes
7 and 8) contain very low levels of AFAP-110 that can be
detected by extended exposure to film. However, in tissue
lysates derived from brain, a 120-kDa isoform was also identified (Fig. 2, lane 2). These data indicate that a larger
120-kDa variant of AFAP-110 is represented in brain. Furthermore, the
steady-state levels of expression appear to be significantly higher in
brain than the other non-neural tissues. Treatment of the 120-kDa
protein from brain with potato acid phosphatase indicated that the
increased molecular mass could not be entirely accounted for by
increased phosphorylations. This larger variant form of the
AFAP-110 protein detected in brain lysates is referred to as AFAP-120,
for Actin Filament Associated Protein-120 kDa.
Figure 2:
Detection of a 120 kDa form of AFAP-110 in
chick brain. Twenty-five µg of tissue lysates were diluted with
RIPA to 1 µg/µl and resolved by 8% SDS-PAGE. The cellular
proteins were transferred to nitrocellulose by Western transfer and
probed for the presence of AFAP-110 using mAb 4C3. Tissues include CE
cells (lane 1), brain (lane 2), eye (lane
3), heart (lane 4), lung (lane 5), muscle (lane 6), kidney (lane 7), liver (lane 8),
intestine (lane 9), bladder (lane 10), spleen (lane 11). The data are representative of three independent
experiments.
Expression of FLC2.1 in COS-1 CellsThe effect of
the novel 258-bp insert was examined with respect to changes in the
molecular mass. The cDNAs encoding AFAP-110, or FLC2.1, were subcloned
from pBluescript KS into the expression vector pCMV-1
for transient expression in COS-1 cells. These new constructs,
pCMV-FLC2.1 and pCMV-AFAP-110, as well as pCMV-1, were transfected into
COS-1 cells and the cells lysed with RIPA lysis buffer 60 h
post-transfection. The transiently expressed proteins were
immunoprecipitated with mAb 4C3, which is avian specific (28) and would preferentially recognize these avian proteins
rather than the COS-1 (African green monkey) cellular form of AFAP-110 (Fig. 3, lane 5). For comparison, AFAP-120 and AFAP-110
were immunoprecipitated with mAb 4C3 from day 16 chick embryo brain and
CE, (Fig. 3, lanes 1 and 2, respectively). The
data demonstrate that the protein encoded by FLC2.1 has a molecular
mass of 120 kDa (Fig. 3, lane 3) and is equivalent in
size to AFAP-120 immunoprecipitated from chick brain (Fig. 3, lane 1). In addition, the transiently expressed AFAP-110 (Fig. 3, lane 4) has a molecular mass equivalent to the
110-kDa AFAP-110 immunoprecipitated from CE cells (Fig. 3, lane 2). These data indicate that the 86-amino-acid insert
encoded in FLC2.1 is sufficient to give rise to the 120-kDa brain form
of AFAP-110, referred to as AFAP-120.
Figure 3:
Expression of FLC2.1 and AFAP-110 in COS-1
cells. Twenty-five µg of day 16 chick embryo brain lysate (lane
1), CE lysate (lane 2) and COS-1/pFLC2.1 (lane
3), COS-1/pAFAP-110 (lane 4), or COS-1/pCMV-1 (lane
5) transfected COS-1 cell lysates were resolved by 8% SDS-PAGE,
Western transferred, and probed for the presence of AFAP-110 or
AFAP-120 with mAb 4C3. Reactive proteins were quantitated with sheep
anti-mouse antibodies conjugated to horseradish peroxidase and detected
by chemiluminescence. Lanes 1 and 2 represent a 2-min
exposure, while lanes 3-5 represent a 10-s exposure. The
data are representative of three independent
experiments.
Interestingly, an
immunoreactive polypeptide of 92 kDa is detected in
pCMV-FLC2.1-transfected COS-1 cells and an 82-kDa immunoreactive
polypeptide is detected in pCMV-AFAP-110-transfected COS-1 cells, (Fig. 3, lanes 3 and 4, respectively). It is
likely that these lower molecular weight forms are the products of
proteolytic degradation. Similarly sized polypeptides are detected in
cell and tissue lysates (see Fig. 2) and have been described
earlier and postulated to be proteolytic degradation
products(13) .
Northern Blot Analysis Demonstrates That the 258-bp
Insert Is Represented in BrainTotal RNA was isolated from the
brain of a day 2 chick hatchling, as well as from CE cells. Twenty
µg of total RNA was resolved on a formaldehyde gel, transferred to
Immobilon, and probed by Northern hybridization using a probe
representing the 5` 452 base pairs common to both AFAP-110 and
clone p2.1 (probe A), or a probe specific to the NINS
representing the 247 base pair within the NINS that are surrounded by Sau3A1 restriction sites (probe B). The data
demonstrate that probe A, common to both AFAP-110 and FLC2.1, detects
an RNA of 6.2 kilobases in both brain and CE (Fig. 4, lanes
1 and 2), as well as a smaller RNA of 3.4 kilobases in CE
cells (Fig. 4, lane 2). However, probe B only
recognized a 6.2-kilobases RNA in brain (Fig. 4, lane
3) and did not hybridize to any RNA isolated from CE cells (Fig. 4, lane 4). These data indicate that the NINS is
represented in brain but not in CE cells. Furthermore, the RNA detected
by probes A and B are the same size in brain, suggesting that they
likely hybridize to the same RNA. Taken together, these data indicate
that (a) a larger 120-kDa variant of AFAP-110 can be detected
in brain, (b) the novel 258-bp sequence is sufficient to
increase the molecular mass of AFAP-110 to 120 kDa, and (c)
the NINS can be detected in brain RNA, but not in CE cellular RNA.
Thus, the FLC2.1 construct does appear to be representative of
AFAP-120.
Figure 4:
Northern blot analysis. Twenty µg of
total RNA was isolated from chick brain and CE, resolved on a 1.5%
agarose gel, transferred to Immobilon, and probed with probe A for the presence of sequence common to AFAP-110 and AFAP-120 (lanes 1 and 2) or with probe B to detect
the novel 258-bp insert (lanes 3 and 4).
The NINS May Facilitate Binding to Cellular
ProteinsThe structure of the 86 amino acids encoded by the NINS
predict a very hydrophilic domain, based on the Kyte and
Doolittle hydropathy parameter set(31) . In addition, the NINS
contains a disproportionate number of serine residues (15/86 residues
or 17%). Although no sites for phosphorylation have been mapped, 7 of
these serine residues are adjacent to Arg or Lys residues, which could
predict a site for protein kinase C phosphorylation(33) . In
addition, the NINS encoded within FLC2.1 does not disrupt the predicted
SH2- or SH3-binding motifs(12) . The NINS exists in the
carboxyl terminus, while the predicted SH2-binding motifs are left
intact, and the predicted SH3-binding motif exists further upstream, in
the amino terminus between amino acids 61-85(12) . For
this reason, it was hypothesized that the SH3 binding properties of
AFAP-120 would be unaffected. These data were confirmed by the
adsorption of AFAP-120 and AFAP-110 with the c-Src SH3 domain, while
neither protein was capable of interacting with c-Src+ SH3
domain. These data indicate that AFAP-120 could represent
an important binding partner for c-Src within the brain. AFAP-120 may
contain sufficient information to be an important binding partner for
other cellular proteins, as well.Interestingly, it was noted that a
proline-rich region which resembles an SH3-binding motif is encoded in
the NINS between amino acids 541 and 551(23) . This
proline-rich motif exists in a region of the NINS that has a high
hydrophilicity prediction. It has already been established
that AFAP-110 has two potential SH3-binding motifs in the amino
terminus and that AFAP-110 is an SH3-binding partner for Src and
Fyn(12) . Because it has been hypothesized that the function of
AFAP-110 is to facilitate interactions between actin filaments and SH2-
and/or SH3-signaling proteins, it was predicted that the NINS might
facilitate interactions with additional cellular proteins. To test this
hypothesis, the NINS was subcloned into pGEX-2T by isolating a 247-bp
fragment that defines the 5` and 3` borders of the insert and
subcloning it into the novel BamH I site of pGEX-2T. GST-NINS
and GST were used to adsorb potential binding proteins from day 16
chick embryo brain lysates, and the molecular mass of these proteins
evaluated by silver stain. To evaluate specificity in binding, three
deletions were constructed in NINS (Fig. 5A). A StuI-SmaI deletion eliminates amino acids
536-593 predicted within the NINS. This binding protein is
referred to as GST-NINS and encodes the first 25
amino acids of the NINS (Ser to Leu ). In
addition, the sequences encoding Leu to
Ser , or Asp to Ser , were
subcloned into pGEX-2T and pGEX-1, respectively. These GST fusion
proteins, GST-NINS and
GST-NINS , encode the carboxyl-terminal 55 or 41
amino acids of the NINS, respectively. These data reveal that a 67-kDa
protein is adsorbed by GST-NINS (Fig. 5B, lane
1) and GST-NINS (Fig. 5B, lane 4), but not with GST or GST-NINS (Fig. 5B, lanes 2 and 5,
respectively). These data indicate that the amino acid sequence between
Tyr and Asp , which encodes the proline-rich
motif, is critical for binding p67. There appears to be a small amount
of a 67-kDa protein absorbed by GST-NINS (Fig. 5B, lane 4), indicating that
sequence interactions defined between Ser and Leu may also contribute to binding.
Figure 5:
Description of a potential cellular
binding partner for the NINS. A, GST-NINS encodes Ser to Ser . Three deletion variants of GST-NINS were
constructed. GST-NINS encodes the first 25 amino
acids of the NINS (Ser to Gly ).
GST-NINS encodes Leu to
Ser . GST-NINS encodes Asp to Ser . B, 250 µg of chick brain
lysate (from a day 9 embryo) were preincubated with GST immobilized on
Sepharose beads, precleared, and then incubated with GST-NINS (lane
1), GST (lane 2), GST-NINS (lane
3) GST-NINS (lane 4), or
GST-NINS (lane 5). Adsorbed brain lysate
proteins were eluted with boiling Laemmli sample buffer, resolved by 8%
SDS-PAGE, and analyzed by silver stain. The abundant protein bands
between 26 and 36 kDa represent the GST-encoded fusion proteins. These
data are representative of three independent
experiments.
GST-NINS and
GST-NINS were used to probe other avian tissue
lysates to determine whether there might be specificity in the
interaction between p67 and the NINS. The data indicate
that an equivalent amount of p67 can be adsorbed from brain, lung,
muscle, liver, and kidney. Theses data support a hypothesis that p67
may not be a specific binding partner for the NINS. However, the data
would indicate that the proline-rich region contained within the NINS
may be responsible for facilitating protein-protein interactions in the
brain. It is likely that p67 contains a structure that is favorable for
interacting with the NINS proline-rich motif. Taken together, these
data indicate that the function of the NINS might be to facilitate
protein-protein interactions in brain via an internal proline-rich
motif. Ren et al.(23) predicted that a consensus
SH3-binding motif would be approximately 10 amino acids long and
contain proline residues at peptide positions 2, 7, and 10 that would
be critical for binding. In addition, a proline residue at position 9
is frequently identified as a component of an SH3-binding motif, and an
alanine residue at position 1 appears to be important for binding.
Lastly, a hydrophobic amino acid at peptide position 8 may contribute
to stability in SH3 binding. The NINS contains a region of 11 amino
acids that are almost identical to the consensus SH3-binding motif
predicted by Ren et al.(23) . This sequence contains
proline residues at peptide positions -1, 2, 9, and 10, as well
as a hydrophobic tyrosine residue at position 8 and serine at position
1 (a conserved change). However, this stretch of amino acids contains
an arginine residue rather than a proline at peptide position 7. A
proline residue at peptide position 7 was identified as being very
important for stable SH3 binding(23) . This variation could be
required for some specific interaction with another cellular protein.
Because the proline-rich region in the NINS resembles an SH3-binding
motif, it is possible this structure could facilitate additional
protein-protein interactions. It is also possible that the function of
the NINS is not related to facilitating protein-protein binding.
However, given that the hypothesized function of AFAP-110 is as an
adaptor molecule that facilitates interactions between SH2- and/or
SH3-containing proteins with the cytoskeleton(12) , it would
not be unrealilistic to hypothesize that the NINS may contribute a
similar function to AFAP-120, thus enhancing its diverse interactions
between cellular proteins and the cytoskeleton. The function of
c-Src has not been discerned; however, it is likely that this
proto-oncogene has a specialized function within the brain. This
hypothesis is based on several observations which indicate that (a) the c-Src tyrosine kinase is activated in
brain(34, 35, 36, 37, 43) ; (b) the c-Src proto-oncogene product is developmentally
regulated in neurons, being expressed initially at the onset of
neuronal differentiation and then maintained at high levels in fully
differentiated neurons in the adult central nervous
system(21, 22, 37, 38, 39, 40, 41, 42) ; (c) this proto-oncogene product is alternatively spliced only
in neurons(20, 44) ; and (d) upon activation,
is capable of inducing neuronal differentiation in cultured neurons,
indicating a role in the signal transduction processes that modulate
neuronal differentiation(19) . Thus, signaling by c-Src in the
brain may be specific and significant. SH2/SH3 interactions between
AFAP-110 or AFAP-120 and c-Src may represent an important link in
signal transduction by Src. It is possible that pp60 may have a unique function in affecting the integrity of the
cytoskeleton(15, 16, 17, 45, 46, 47, 48) .
Localization studies in neurons indicate that pp60 is
enriched in growth cones, a structure that is also rich in actin
filaments(49, 50) . Further, pp60 isolated from these growth cones have a high tyrosine-specific
kinase activity(49) . Thus, pp60 may have a
specialized function in growth cone extension, which would not be
inconsistent with previous observations that demonstrate a role for
activated forms of Src in modulating cell-cell contacts or
cell-substratum contacts. One potential function for AFAP-120 would
be to facilitate interactions between SH2/SH3-containing proteins and
the cytoskeleton. AFAP-120 does retain an association with actin
structures, as detected by immunofluorescence with Ab F1 in COS-1 cells
expressing FLC2.1. The function of AFAP-120 in signal
transduction is not clear; however, given that nonreceptor tyrosine
kinases like pp60 and pp59 are
expressed at relatively high levels in brain(18) , it would
appear likely that AFAP-120 would be positioned to interact with, and
possibly mediate a signal transduction event through, these tyrosine
kinases. Lastly, the NINS may play a unique role in facilitating a
similar interaction with other cellular proteins. These stable
complexes may play a functionally important role in modulating the
integrity of actin filaments in response to specific cell signaling
events in the brain.
FOOTNOTES
- *
- This work was
supported by the West Virginia University Medical Corporation and
National Institutes of Health Biomedical Research Grant
2S07RR05433-31 (to D. C. F.), Faculty Senate Research Grant
R-93-021 of West Virginia University (to D. C. F.), and a grant
from the Katherine and L. Newton Memorial Fund of the Charleston Area
Medical Foundation (to D. C. F.). The costs of publication of this
article were defrayed in part by the payment of page charges. This
article must therefore by hereby marked
``advertisement'' in accordance with 18 U.S.C.
Section 1734 solely to indicate this fact.
This work is dedicated
to the late Dr. Eric H. Humphries, whose input and critiques were
instrumental toward the development of this project. The nucleotide
sequence(s) reported in this paper has been submitted to the
GenBank(TM)/EMBL Data Bank with accession number(s)
L20302[GenBank]. - §
- To
whom requests for reprints should be addressed. Tel.: 304-293-6966;
Fax: 304-293-7584.
- (
) - The abbreviations used are:
GST, glutathione S-transferase; CMV, cytomegalovirus; CE,
chick embryo; mAb, monoclonal antibody; bp, base pair(s); PAGE,
polyacrylamide gel electrophoresis; MOPS, morpholinepanesulfonic acid.
- (
) - D. C. Flynn, unpublished data.
ACKNOWLEDGEMENTS
We thank and acknowledge Dr. J. T. Parsons for
helpful advice and for fostering the early stages of this project. We
also acknowledge J. Strobl, G. Spirou, W. Wonderlin, V. Pathak, and
W.-S. Hu, for advice and many helpful discussions. We thank B. Mayer
and D. Baltimore for the kind gift of c-Src+ GST-SH3+; as
well as Dr. C. Dugan for also providing c-Src GST-SH3+; and Dr. J.
Biedler for the SH-SY5Y cells.
REFERENCES
- Pawson, T., and Gish, G. D. (1992) Cell 71, 359-362
[CrossRef][Medline]
[Order article via Infotrieve]
- Musacchio, A., Gibson, T., Lehto, V.-P., and Saraste, M. (1992) FEBS Lett. 307, 55-61
[CrossRef][Medline]
[Order article via Infotrieve]
- Rodaway, A. R. F., Sternberg, M. J. E., and Bentley, D. L. (1989) Nature 342, 624
[Medline]
[Order article via Infotrieve]
- Drubin, D. G., Mulholland, J., Zhu, Z., and Botstein, D. (1990) Nature 343, 288-290
[CrossRef][Medline]
[Order article via Infotrieve]
- Lowenstein, E. J., Daly, R. J., Batzer, A. G., Li, W., Margolis, B., Lammers, R., Ullrich, A., Skolnik, E. Y., Bar-Sagi, D., and Schlessinger, J. (1992) Cell 70, 431-442
[CrossRef][Medline]
[Order article via Infotrieve]
- McGlade, C. J., Ellis, C., Reedijk, M., Anderson, D., Mbamalu, G., Reith, A. D., Panayotou, G., End, P., Bernstein, A., Kazlauskas, A., Waterfield, M. D., and Pawson, T. (1992) Mol. Cell Biol. 12, 991-997
[Abstract/Free Full Text]
- Olivier, J. P., Raabe, T., Henkemeyer, M., Dickson, B., Mbamalu, G., Margolis, B., Schlessinger, J., Hafen, E., and Pawson, T. (1993) Cell 73, 179-192
[CrossRef][Medline]
[Order article via Infotrieve]
- Simon, M. A., Dodson, G. S., and Rubin, G. M. (1993) Cell 73, 169-178
[CrossRef][Medline]
[Order article via Infotrieve]
- Cicchetti, P., Mayer, B. J., Thiel, G., and Baltimore, D. (1992) Science 257, 803-806
[Abstract/Free Full Text]
- Ridley, A. J., and Hall, A. (1992) Cell 70, 389-400
[CrossRef][Medline]
[Order article via Infotrieve]
- Ridley, A. J., Paterson, H. F., Johnston, C. L., Diekmann, D., and Hall, A. (1992) Cell 70, 401-410
[CrossRef][Medline]
[Order article via Infotrieve]
- Flynn, D. C., Leu, T.-H., Reynolds, A. B., and Parsons, J. T. (1993) Mol. Cell Biol. 13, 7892-7900
[Abstract/Free Full Text]
- Kanner, S. B., Reynolds, A. B., Wang, H.-C. R., Vines, R. R., and Parsons, J. T. (1991) EMBO J. 10, 1689-1698
[Medline]
[Order article via Infotrieve]
- Reynolds, A. B., Kanner, S. B., Wang, H.-C., and Parsons, J. T. (1989) Mol. Cell. Biol. 9, 3951-3958
[Abstract/Free Full Text]
- Schaller, M. D., Bouton, A. B., Flynn, D. C., and Parsons, J. T. (1993) Prog. Nucleic Acid Res. Mol. Biol. 44, 205-227
[Medline]
[Order article via Infotrieve]
- Felice, G. R., Eason, P., Nermut, M. V., and Kellie, S. (1990) Eur. J. Cell Biol. 52, 47-59
[Medline]
[Order article via Infotrieve]
- Reynolds, A. B., Roesel, D. J., Kanner, S. B., and Parsons, J. T. (1989b) Mol. Cell. Biol. 9, 629-638
[Abstract/Free Full Text]
- Cooper, J. A. (1990) in Peptides and Protein Phosphorylation (Kemp, B. E., ed) pp. 85-113 CRC Press, Boca Raton, FL
- Alema, S., Casalbore, P., Agostini, E., and Tato, F. (1985) Nature 316, 557-559
[CrossRef][Medline]
[Order article via Infotrieve]
- Brugge, J. S., Cotton,, P. C., Queral, A. E., Barrett, J. N., Nonner, D., and Keane, R. W. (1985) Nature 316, 554-557
[CrossRef][Medline]
[Order article via Infotrieve]
- LeBeau, J. M., Wiestler, O. D., and Walter, G. (1987) Mol. Cell Biol. 7, 4115- 4117
[Abstract/Free Full Text]
- Weistler, O. D., and Walter, G. (1988) Mol. Cell. Biol. 8, 502-504
[Abstract/Free Full Text]
- Ren, R., Mayer, B. J., Cicchetti, P., and Baltimore, D. (1993) Science 259, 1157-1161
[Abstract/Free Full Text]
- Sanger, F., Nicklen, S., and Coulson, A. R. (1977) Proc. Natl. Acad. Aci. U. S. A. 74, 5463-5467
[Abstract/Free Full Text]
- Okayama, H., and Berg, P. (1983) Mol. Cell Biol. 3, 280-289
[Abstract/Free Full Text]
- Flynn, D. C., Schaller, M. D., and Parsons, J. T. (1992) Oncogene 7, 579-583
[Medline]
[Order article via Infotrieve]
- Chen, C., and Okayama, H. (1987) Mol. Cell Biol. 7, 2745-2752
[Abstract/Free Full Text]
- Kanner, S. B., Reynolds, A. B., Vines, R. R., and Parsons, J. T. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 3328-3332
[Abstract/Free Full Text]
- Smith, D. B., and Johnson, K. S. (1988) Gene (Amst.) 67, 31-40
[CrossRef][Medline]
[Order article via Infotrieve]
- Chomczynski, P., and Sacchi, N. (1987) Anal. Biochem. 162, 156-159
- Kyte, J., and Doolittle, R. F. (1982) J. Mol. Biol. 157, 105-132
[CrossRef][Medline]
[Order article via Infotrieve]
- Harlow, E., and Lane, D. (1988) Antibodies: A Laboratory Manual , Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
- Kemp, B. E., and Pearson, R. B. (1990) Trends Biochem. Sci. 17, 342-346
- Cotton, P. C., and Brugge, J. S. (1983) Mol. Cell. Biol. 3, 1157-1162
[Abstract/Free Full Text]
- Levy, B. T., Sorge, L. K., Meymandi, A., and Maness, P. F. (1984) Dev. Biol. 104, 9-17
[CrossRef][Medline]
[Order article via Infotrieve]
- Shores, C. G., Cox, M. E., and Maness, P. F. (1987) J. Biol. Chem. 262, 9477-9485
[Abstract/Free Full Text]
- Cartwright, C. A., Simantov, R., Cowan, W. M., Hunter, T., and Eckhart, W. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 3348-3352
[Abstract/Free Full Text]
- Schartl, M., and Barnekow, A. (1984) Dev. Biol. 105, 415-422
[CrossRef][Medline]
[Order article via Infotrieve]
- Sorge, L. K., Levy, B. T., and Maness, P. F. (1984) Cell 36, 249-257
[CrossRef][Medline]
[Order article via Infotrieve]
- Simon, M. S., Drees, B., Kornberg, T., and Bishop, J. M. (1985) Cell 42, 831-840
[CrossRef][Medline]
[Order article via Infotrieve]
- Lynch, S. A., Brugge, J. S., and Levine, J. M. (1986) J. Neurosci. Res. 16, 127-139
[CrossRef][Medline]
[Order article via Infotrieve]
- Cartwright, C. A., Simantov, R., Kaplan, P. L., Hunter, T., and Eckhart, W. (1987) Mol. Cell. Biol. 7, 1830-1840
[Abstract/Free Full Text]
- Rosen, N., Bolen, J. B., Schwartz, A. M., Cohen, P., DeSeau, V., and Isreal, M. A. (1986) J. Biol. Chem. 261, 13754-13759
[Abstract/Free Full Text]
- Sugrue, M. M., Brugge, J. S., Marshak, D. R., Greengard, P., and Gustafson, E. L. (1990) J. Neurosci. 10, 2513-2527
[Abstract]
- Warren, S. L., Handel, L. M., and Nelson, W. J. (1988) Mol. Cell. Biol. 8, 632-646
[Abstract/Free Full Text]
- Rohrschneider, L. R. (1980) Proc. Natl. Acad. Sci. U. S. A. 77, 3514-3518
[Abstract/Free Full Text]
- Warren, S. L., and Nelson, W. J. (1987) Mol. Cell. Biol. 7, 1326-1337
[Abstract/Free Full Text]
- Azarnia, R., Reddy, S., Kmiecik, T. E., Shalloway, D., and Lowenstein, W. R. (1988) Science 239, 398-401
[Abstract/Free Full Text]
- Maness, P. F., Aubry, M., Shores, C. G., Frame, L., and Pfenninger, K. H. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 5001-5005
[Abstract/Free Full Text]
- Sobue, K., and Kanda, K. (1988) Biochem. Biophys. Res. Commun. 157, 1383-1389
[CrossRef][Medline]
[Order article via Infotrieve]
©1995 by The American Society for Biochemistry and Molecular Biology, Inc.

CiteULike Complore Connotea Del.icio.us Digg Reddit Technorati What's this?
This article has been cited by other articles:

|
 |

|
 |
 
M. Lodyga, X.-H. Bai, E. Mourgeon, B. Han, S. Keshavjee, and M. Liu
Molecular cloning of actin filament-associated protein: a putative adaptor in stretch-induced Src activation
Am J Physiol Lung Cell Mol Physiol,
August 1, 2002;
283(2):
L265 - L274.
[Abstract]
[Full Text]
[PDF]
|
 |
|
Copyright © 1995 by the American Society for Biochemistry and Molecular Biology.
|
Advertisement
Advertisement
|