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Volume 271,
Number 10,
Issue of March 8, 1996 pp. 5859-5865
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
Cloning
and Characterization of the Promoter for a Potassium Channel Expressed
in High Frequency Firing Neurons (*)
(Received for publication, August 17,
1995; and in revised form, December 19, 1995)
Li
Gan
(1),
Teresa
M.
Perney
(2), (§),
Leonard
K.
Kaczmarek
(1) (2)(¶)From the
(1)Department of Cellular and Molecular
Physiology and
(2)Department of Pharmacology, Yale University
School of Medicine, New Haven, Connecticut 06510
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
The Kv3.1 potassium channel is expressed in neurons that
generate trains of high frequency action potentials in response to
synaptic inputs. To understand the mechanisms underlying the regulation
and restricted expression pattern of the Kv3.1 gene, we have cloned and
characterized its promoter. We first isolated a 5.3-kilobase pair
fragment of the Kv3.1 5`-flanking region. When linked to the
chloramphenicol acetyltransferase reporter gene, this fragment was
found to be active in the undifferentiated PC12 cell line, a
neuron-like cell line, but not in a fibroblast cell line. By carrying
out a series of deletion analyses in undifferentiated PC12 cells, we
have localized the essential promoter region to a highly GC-rich region
containing four Sp-1 binding sites. Similar deletion analysis in NIH3T3
cells suggests that multiple silencing elements and enhancing
element(s) are involved in the cell type-specific expression of this
gene. Further regulatory elements, including one cyclic AMP/calcium
response element (CRE) and one Ap-1 element were found in the upstream
region of the promoter. Using a stable undifferentiated PC12 cell line
transfected with the Kv3.1 5`-flanking region, we determined that
promoter activity is enhanced by a cAMP analog and a calcium ionophore.
Deletion of the CRE-like element at position -252 eliminated the
enhancement of promoter activity by cAMP, and mobility shift assays
confirmed that the Kv3.1 CRE sequence binds both a nuclear factor in
undifferentiated PC12 cells and recombinant CRE binding protein. Our
results suggest that the transcription of the Kv3.1 channel may be
regulated by neurotransmitters that elevate cAMP levels in neurons.
INTRODUCTION
The Kv3.1 gene encodes a mammalian voltage-dependent potassium
channel that is related to the Drosophila Shaw gene(1, 2) . In contrast to many other potassium
channels that are expressed in a variety of tissues, the Kv3.1 channel
appears to be expressed only in brain and in a subpopulation of T
lymphocytes(1, 3, 4) . In situ hybridization and immunocytochemistry have shown that within the
nervous system, the Kv3.1 K channel is found only in a
subset of
neurons(4, 5, 6, 7, 8) . In
particular, it is expressed at particularly high levels in neurons that
are capable of firing action potentials at high frequencies with little
or no adaptation during maintained trains of synaptic
inputs(5) . Examples of such cells include neurons in auditory
brainstem that phase-lock their action potentials to stimulus
frequencies of up to several kHz (see (9, 10, 11) ) and hippocampal and cortical
interneurons, which are capable of generating trains of action
potentials at several hundred Hz (see (12) and (13) ). The biophysical characteristics of the Kv3.1 channel also differ
from those of many other voltage-dependent potassium channels. For
example, when the Kv3.1 channel is expressed in a heterologous
expression system such as Xenopus oocytes or a mammalian cell
line, it activates at relatively positive potentials and has very rapid
deactivation kinetics when compared with other members of the Shaker superfamily of
channels(1, 14, 15, 16) . Computer
simulation studies suggest that a channel with these characteristics
minimizes the relative refractory period that follows individual action
potentials, and that changes in the amplitude of such a current alter
the ability of a neuron to follow high frequency synaptic
inputs(17) . The precise factors that determine the level of
expression of Kv3.1 channels in neurons are not known. However, it has
been shown that the levels of the Kv3.1 message are developmentally
regulated(4, 5) . Furthermore, experiments in cell
lines indicate that Kv3.1 transcription may be regulated by
Ca , cAMP, and growth factors(18) . In the
present study, we have identified and characterized the promoter region
for the Kv3.1 gene to investigate the mechanisms that regulate
transcription of the Kv3.1 channel.
EXPERIMENTAL PROCEDURES
Library ScreeningThe 732 bp ( )HindIII-EcoRI fragment derived from the
published 5` noncoding region of the rat cDNA clone D273 (1) was random prime-labeled to a specificity of >10 cpm/µg (19) and used to screen a rat genomic library
(Strategene). We identified five positive clones and determined that
they all contained a 6-kb HindIII fragment. This 6-kb fragment
was subcloned into pBluescript KS (Strategene) to generate pKS 6000. A
1-kb SmaI-HindIII fragment was identified as
containing the probe sequence and was also subcloned into pBluescript
KS to create the plasmid pKS 1000. Sequencing analysis was conducted
using sequenase 2.0 (U. S. Biochemical Corp.) in both strands.
Plasmid ConstructionStandard molecular cloning
techniques were used in all plasmid construction(20) , and the
orientation and junction sequence were in all cases verified by
sequencing the plasmid. Two series of constructs were made, based on
the Promega CAT expression vectors pCATenhancer, which contains the
SV40 enhancer, and pCAT-basic, which lacks the SV40 enhancer. pCATE5300
and pCATE5300R were constructed by subcloning the 6-kb HindIII
fragment from pKS 6000 into the HindIII site in the
pCATenhancer. This fragment contains about 5.3 kb of the 5`-flanking
region and 0.7 kb of the noncoding region of the Kv3.1 gene. For
pCATE5300, the HindIII fragment was inserted in the 5` to 3`
orientation. For pCATE5300R, the orientation of the insert was
reversed. pCAT5300 was constructed in a similar way using the
pCAT-basic vector.Constructs pCATE1213 and pCAT1213, which were
used for stable transfections, were generated using Exonuclease III
(Promega) to delete sequence from the 5`-end of pKS 6000. A plasmid
with a deletion of approximately 4 kb at its 5`-end was designated as
pKS 2000. Its insert was then subcloned into both the pCATE vector to
generate pCATE1213 and the pCAT-basic vector to generate pCAT1213.
Similarly, pCAT+22 was constructed by deleting pKS 2000 at its
5`-end using Exonuclease III. Other clones were constructed by using
convenient restriction enzyme sites. pCAT528 and pCAT266 were
constructed from pCAT1213. PCAT528 was constructed from a PstI
and XhoI fragment of pCAT1213, which was blunt end-treated
with Klenow enzyme before ligation. PCAT266 was constructed from the PstI(blunt-ended)-SmaI fragment of pCAT1213. pCAT226
and pCAT71 were generated from pKS 1000. For pCAT226, the SpeI(blunt-ended)-SalI fragment was inserted into the
pCAT-basic vector cut with PstI (blunt-ended) and SalI. Likewise, the NarI(blunt-ended)-SalI
fragment was inserted into the pCAT-basic vector cut with PstI
(blunt-ended) and SalI to create pCAT71. PCATE71 was generated
by inserting the NarI(blunt-ended)-SalI fragment into
the pCATE vector.
Cell Culture, DNA Transfection, and CAT
AssaysCells were grown at 37 °C in humidified air with 5%
CO . All PC12 cells used in experiments were
undifferentiated PC12 cells, which were grown in Dulbecco's
modified Eagle's medium supplemented with 10% horse serum, 5%
fetal bovine serum and 2 mM glutamine. NIH3T3 cells were grown
in Dulbecco's modified Eagle's medium supplemented with 10%
fetal bovine serum and 2 mM glutamine. Medium and serum were
purchased from Life Technologies, Inc.Plasmid DNAs purified by CsCl
banding were transfected using LipofectAmine (Life Technologies, Inc.).
5 µg of the CAT constructs and 5 µg of the pREP-lacZ
(Invitrogen), a plasmid containing the -galactosidase gene driven
by the Rous sarcoma virus promoter, were cotransfected into the cells.
2 days after the transfection, the cells were harvested for analysis.
The cell lysates were obtained by three cycles of freeze-thawing. The
efficiencies of transfections were normalized using the activity of
-galactosidase in cell lysates as described by Sambrook et
al.(20) . CAT assays were performed as described by Gorman et al.(21) . The conversion rates from chloramphenicol
to acetylated forms were quantified using a liquid scintillation
counter. The regulation of the Kv3.1 promoter by different factors
was studied in stable cell lines transfected with pCATE1213 and
pCAT1213. In some experiments, transfected cells were incubated for 24
h with 1 mM dibutyryl cAMP and/or 5 µM ionomycin
before harvesting and preparation of cell lysates. The amount of
protein used in each assay was determined (22) and used for
normalization of results. The response to cAMP was also tested in
transiently transfected cells. In these experiments, cells grown in a
60-mm dish were transfected and split 24 h later into four 35-mm
dishes. The cells were allowed to attach for several hours and then
treated with 1 mM dibutyryl cAMP for 24 h before harvesting
and determination of CAT activity.
Primer Extension Analysis and RNase Protection
AssayRNA was isolated by the method of Chowzynski and
Sacchi(23) . In primer extension analysis(20) , an
oligonucleotide corresponding to the bases -1123 through
-1103 from the Kv3.1 sequence described by Luneau et
al.(1) , ACCGCCGCCGCTGCTGCCTC, was used as a primer. After
being end-labeled with T4 polynucleotide kinase and
[ - P]ATP (6000 mCi/mM), the primer
was annealed with RNA from rat cerebellum and extended using reverse
transcriptase. The extension products were visualized by
autoradiography on 5% DNA sequencing gels. The size of the cDNA
reflects the distance from the primer to the 5`-end of the RNA.In
the RNase protection assay to determine transcription start sites, a
[ P]CTP-labeled antisense RNA probe was
transcribed using T7 polymerase from pKS 1000 linearized with BamHI. The resulting probe is complementary to the 158 bp of
the published 5` region and extends 286 bp upstream in the genomic
clone. Subsequent procedure was similar to that described by Chamberlin
and Ryan(24) . Briefly, an excess of the P-labeled
probe was hybridized with 10 µg of total RNA from rat cerebellum or
tRNA in 80% formamide at 46 °C. The single-stranded RNAs were then
digested with 0.5 µg/ml RNase A and 6.5 µg/ml RNase T1. The
protected fragments were run on denaturing polyacrylamide gels and
autoradiographed. RNase protection assays were also conducted to
analyze the regulation of Kv3.1 mRNA by 1 mM 8-bromo-cAMP.
Total RNA from PC12 cells treated for 24-48 h by 1 mM 8-bromo-cAMP and control cells were hybridized with Kv3.1-specific
riboprobe as described previously(5) . Antisense probe from the
glyceraldhyde-3-phosphate dehydrogenase gene (Ambion, TX) was used as
an internal standard to normalize the amount of total RNA used.
Protected bands shown on autoradiography were quantified using an
IS-1000 Digital Imaging system (Alpha Innotech Corporation, CA).
Nuclear Extract and Gel Mobility Shift
AnalysisNuclear extract from PC12 cells was prepared using a
microscale nuclear extracting method(25) . The extract was
centrifuged, and the supernatant containing nuclear proteins was
collected and stored at -70 °C until use. Recombinant CREB-1
bzip protein was purchased from Santa Cruz Biotechnology, CA.For
mobility shift assays, a double-stranded oligonucleotide probe
(end-labeled with [ - P]ATP) was made
corresponding to the region surrounding the putative CRE site
(GCGAGCCCAGACGTCGCTGGGAGC). An oligonucleotide in which the CRE-like
sites were mutated, CRM, was also used in the assay as noncompetitor
(GCGAGCCCAGTTGTCGCTGGGAGC). In addition, an oligonucleotide probe with
the somatostatin CRE core region(26) ,
AGAGATTGCCTGACGTCAGAGAGCTAG, was used as a positive control. The
oligonucleotide probes (0.5 ng) were incubated with 2 µg of the
extract or 1-2 µg of the recombinant CREB-1 protein and 0.5
µg of poly(dI-dC) in a total volume of 10 µl containing 4%
glycerol, 1 mM MgCl , 0.5 mM EDTA, 0.5
mM dithiothreitol, 50 mM NaCl, 10 mM Tris-HCl, pH 7.5, as described in Ausubel et
al.(27) . The reaction mixtures were incubated at room
temperature for 20 min. Cold double-stranded oligonucleotides in 10-
and 100-fold excess were added in the preincubation step (before adding
the probe) and used as competitors to show the specificity of the
binding. The reaction mixtures were then run on a 4% nondenaturing
acrylamide gel at 150 V for more than 3 h, and the products were
detected by autoradiography.
RESULTS
Cloning of the 5`-Flanking Region of the Kv3.1
GeneThe Kv3.1 gene has two splice variants, Kv3.1a and
Kv3.1b(1, 2) . The two transcripts diverge at the C
terminus, such that the last 10 amino acids in Kv3.1a are replaced in
Kv3.1b by 84 amino acids that are encoded by two other exons. It has
been shown that Kv3.1a and Kv3.1b are colocalized in the same
neurons(5) . In our studies, the probe used to screen the
genomic library was derived from the EcoRI-StuI
fragment (732 bp) of the 5`-noncoding region of Kv3.1b. However, the
5`-flanking region of the Kv3.1b gene will be referred to as that of
the Kv3.1 gene for simplicity. About 10 plaques from a rat
genomic library were screened, and five positive clones were
identified. Using restriction enzyme mapping and Southern blotting, we
determined that these overlapping clones span about 25 kb. Three of the
overlapping phage clones are shown in Fig. 1. Southern blotting
and sequencing analysis demonstrated that a 6-kb HindIII
fragment contains approximately 5.3 kb that are upstream of the
published 5`-noncoding region (Fig. 1).
Figure 1:
Rat Kv3.1 genomic DNA containing the 5`
noncoding region and 5`-flanking region. A schematic diagram of the
Kv3.1 genomic clone, containing approximately 15 kb of the 5`-flanking
region. The indicated restriction sites are as follows: S, SalI; X, XhoI; H, HindIII; N, NotI; B, BamHI. The thick
black bar within the boxed region represents 5`-noncoding
region that overlaps with the probe derived from the Kv3.1 cDNA clone
(Luneau et al.(1) ). The stippled area corresponds to the sequence shown in Fig. 3. 09, 04, and 16 represent
overlapping phage clones isolated from a rat genomic
library.
Figure 3:
Nucleotide sequence of the rat Kv3.1
promoter region. Numbers represent nucleotide position relative to the
most 3` of the major start sites (+1). The other major
transcription start site is also labeled with an asterisk. One
CRE-like, one Ap-1 consensus element, and five consensus Sp-1 sites are underlined. The junctions of the deletion constructs shown in Fig. 4are also labeled and
underlined.
Figure 4:
Functional analysis of Kv3.1 promoter
activity in undifferentiated PC12 cells and in NIH3T3 cells. Left, the extent of the 5` deletions of the promoter region in
different constructs are represented qualitatively by the lengths of
the thin lines, which are coupled to the CAT reporter gene at
the right end of each construct. The approximate positions of Ap-1,
CRE, and Sp-1 sites are indicated in the constructs. Right,
CAT activities of the different deletion constructs are expressed
relative to the vector pCATSV40, which contains the SV40 promoter. All
of the values are normalized to the activities of -galactosidase
gene, which was cotransfected with CAT constructs. pCAT+22 was
only transfected into undifferentiatd PC12 cells, not into NIH3T3
cells. Results represent the mean relative activities ± S.E.
from three to seven independent experiments with two different plasmid
preparations.
Mapping of the Transcriptional Initiation Sites of the
Kv3.1 GeneTo characterize the promoter region of the Kv3.1
gene, we first identified the transcriptional start sites using primer
extension analysis and an RNase protection assay (Fig. 2). For
primer extension analysis, we designed an antisense oligonucleotide
(see ``Experimental Procedures'') corresponding to the
sequence from 38 to 57 bp downstream of the published
5`-end(1) . Extension of this primer yielded two major
fragments, 65 and 74 bp in length, and three to four minor bands of
larger size (Fig. 2A). This result suggests that the
Kv3.1 K channel gene has two major transcription start
sites and several minor ones further upstream.
Figure 2:
Identification of the transcription start
sites of the Kv3.1 gene. A, a primer extension assay. In the
right lane (CB), 10 µg of cerebellar total RNA was used as
a template in the assay. The primer is located at a position
38-57 bp downstream of the published 5`-end(1) . B, RNase protection assay. A labeled riboprobe corresponding
to the region spanning the putative transcription start sites was
hybridized with 10 µg of total RNA isolated from rat cerebellum (CB) or tRNA and then digested with RNase A and RNase T1 for
30 min (CB lane, left) or 60 min (CB lane, right). No bands were seen with tRNA. A sequence ladder of
known sequence was used as a size marker (left four
lanes).
To verify the
heterogeneous 5`-end of the Kv3.1 mRNA molecule, we also analyzed rat
cerebellar RNA by RNase protection assays (Fig. 2B). A
458-base RNA probe, designed to be complementary to a genomic fragment
spanning the putative transcription start sites, was hybridized with
total RNA isolated from rat cerebellum or with tRNA. As shown in Fig. 2B, protected bands were only observed with RNA
isolated from the cerebellum, which normally expresses the Kv3.1
channel. The length of the protected bands in the RNase assay indicates
the distance from the start of the mRNA to the 3`-end of the probe.
Because the antisense RNA probe extends 101 bp to the 3`-end of the
sequence used in the primer extension analysis, the sizes of the two
major bands (166 and 175 bp) were in perfect agreement with the sizes
of the bands detected by primer extension (65 and 74 bp). As in the
primer extension experiments, there were also several minor sites lying
in the upstream region of the two major cap sites. We found it
difficult to determine the exact positions of these minor sites, which
did not appear to agree exactly with those detected by primer extension
analysis. It is therefore not clear whether these minor sites represent
real, alternate transcription start sites. Together, these results
demonstrate the existence of two principal transcriptional initiation
sites in the Kv3.1 gene, appearing 8 and 17 bp from the 5`-end of the
cDNA clone. Both are labeled with asterisks in Fig. 3,
which shows the sequence of the upstream region of the Kv3.1 gene. The
position of the more 3` of the two start sites is assigned as +1.
Sequence Analysis of the 5`-Flanking Region of the Kv3.1
GeneAnalysis of the 1.5 kb of the sequence 5` to the
transcription start sites of the Kv3.1 gene reveals that there is no
TATA box or CAAT box around the start sites. The region proximal to the
start sites, however, contains five putative Sp-1 sites beginning at
positions -135, -165, -197, -209, and
-234 (Fig. 3), which have previously been demonstrated to
be important for the activational activity of other TATA-less
promoters(28, 29) . Further inspection reveals that
this region contains a number of putative binding sites for other
transcriptional factors. One consensus Ap-1 binding site beginning at
position -508 and one CRE-like site beginning at position
-252 were identified. These elements may be involved in the
transcriptional regulation of the Kv3.1 gene.
Promoter Activity of the Kv3.1 Gene 5`-Flanking Region in
Different Cell LinesTo determine whether the 5.3 kb of the
5`-flanking region of the Kv3.1 gene contains promoter activity, we
ligated this fragment to the CAT reporter gene. The SV40 enhancer was
also included in some of the constructs (see ``Experimental
Procedures''). The activity of this fragment was monitored by
transiently transfecting the constructs into undifferentiated PC12
cells, which express the Kv3.1 channel, ( )and into NIH3T3
cells, which do not express the Kv3.1 gene. In each case, CAT activity
driven by the Kv3.1 promoter was compared with that driven by the SV40
promoter, which is believed to give nonselective activity in most
mammalian cell lines.In PC12 cells, in the absence of the SV40
enhancer, CAT expression driven by the 5.3-kb fragment was 2-3
times higher than that produced by the SV40 promoter (Table 1).
In contrast, this fragment exhibited little if any activity compared
with the SV40 promoter in NIH3T3 fibroblasts, suggesting that the
tissue-specific expression of the Kv3.1 gene may, at least in part, be
dependent on the upstream regulatory region of the Kv3.1 gene. In
control experiments, constructs that comprised the vector without the
5.3-kb fragment or that contained the 5.3-kb fragment in 3` to 5`
orientation, generated little to no CAT activity (Table 1).
Interestingly, in the presence of SV40 enhancer, a nonspecific
enhancer, the activity of the 5.3-kb 5`-fragment in NIH3T3 cells was
increased and the cell type specificity of this upstream regulatory
region was quenched (Table 1).
Functional Analysis of Kv3.1 Promoter Activity in
Undifferentiated PC12 Cells and NIH3T3 CellsTo dissect the
region essential for transcription activation and for cell
type-specific expression, we next made a series of deletion constructs
of the 5.3-kb fragment and transfected them into undifferentiated PC12
cells and NIH3T3 cells.A diagram of the deletion constructs with
the CAT reporter gene is shown in Fig. 4. In PC12 cells, lysates
of cells transfected with the constructs pCAT1213 and pCAT528 showed
little change in CAT activity compared with that of pCAT5300. As the
upstream region was further deleted, however, transcriptional activity
increased. Maximum activity occurred when only 266 bp upstream of the
transcription initiation site were present. This result suggests that a
negative element or elements may exist in the upstream region between
-528 and -266. Further deletion to produce construct
pCAT226 did not produce a substantial decrease in CAT activity,
indicating that deletion of the Sp-1 element at position -234 to
-229 does not decrease promoter activity significantly. However,
removal of the region from -226 to -71, which contains the
other four Sp-1 elements, resulted in an 80% decrease in CAT activity.
Thus, the major positive elements for the Kv3.1 promoter reside within
this region. As also shown in Fig. 4, when the Kv3.1
transcriptional start sites are deleted (pCAT+22), promoter
activity is almost completely abolished, indicating that the
5`-noncoding region of the Kv3.1 gene does not contain promoter
activity. Similar deletion analyses were also conducted in NIH3T3
cells (Fig. 4). We found that all the constructs with 5`
deletions showed much lower CAT activities in NIH3T3 cells than those
in PC12 cells (Fig. 4). When the 5.3-kb fragment was deleted to
1213 bp, CAT activity increased. Deletion from -1213 to
-528 also resulted in an about 3-fold increase of CAT activity,
suggesting that multiple silencing element(s) in the 5`-flanking region
are involved in controlling cell type-specific expression.
Interestingly, further deletion from -528 to -266 and
-226 resulted in a slight decrease in CAT activity. The promoter
activities of pCAT266 and pCAT226 are far less active in NIH3T3 cells
than in PC12 cells, suggesting that enhancing elements in this region
are selectively active in undifferentiated PC12 cells. More detailed
analysis will be necessary to map the cell type-specific enhancing
elements within the region -226 bp to -71bp.
Regulation of the Kv3.1 Gene Promoter by
cAMPPrevious work has suggested that the levels of Kv3.1 mRNA
in wild-type and ras-transfected AtT20 cells may be regulated
by cAMP(18) . In undifferentiated PC12 cells, using an RNase
protection assay, we have found that the levels of Kv3.1a mRNA
increased by 50-100% after 24-48 h of treatment with 1
mM 8-bromo-cAMP (n = 3, data not shown). The
presence of a CRE-like element in the promoter region suggests that the
effect of cAMP on the level of Kv3.1 mRNA may be mediated through the
binding of cyclic AMP/CREB or related transcriptional factors to the
Kv3.1 promoter. To investigate whether cAMP regulates Kv3.1 promoter
activity, we made a stable PC12 cell line transfected with pCATE1213.
The pCATE1213 plasmid contains 1213 bp of the upstream region, which
includes the CRE-like element. Cells were treated with 1 mM dibutyryl cAMP for 24 h and harvested for CAT assays together with
control untreated cells. As shown in Fig. 5, 1 mM dibutyryl cAMP increased CAT activity by approximately 4-fold (p < 0.02). We also made a stable PC12 cell line
transfected with pCAT1213, which lacks the SV40 enhancer. 24 h of
treatment with 1 mM dibutyryl cAMP increased CAT activity by
296.4% ± 31.7 (n = 3, p < 0.05)
Figure 5:
Effect of cAMP and ionomycin on the Kv3.1
promoter in a stable cell line transfected with pCATE1213. CAT activity
in cells treated for 24 h with 1 mM dibutyryl-cAMP, 5
µM ionomycin or both is presented relative to that in
control untreated cells (control). An equivalent amount of
protein was used in both experimental and control assays. The results
shown the mean relative activities ± S.E. of four to six
experiments in two to three independent preparation of
cells.
To determine if the CRE-like element at -252 participates in
the cAMP response of the Kv3.1 promoter, we carried out transient
transfections using the series deletion constructs. Fig. 6shows
that promoter activity was increased by a 24-h treatment with 1 mM dibutyryl cAMP in cells transfected with constructs containing the
CRE-like element (pCAT1213, pCAT528, and pCAT266), but not in cells
transfected with pCAT226, in which the CRE-like element is deleted.
These data suggests that the region from -266 to -226
surrounding the CRE-like element at position -252 is crucial for
the cAMP response of the Kv3.1 promoter.
Figure 6:
The
effects of dibutyryl cAMP on the Kv3.1 promoter in transient
transfections using deleted constructs. Histograms show the change in
CAT activity after treatment with 1 mM dibutyryl cAMP for 24
h, relative to untreated cells. Constructs pCAT1213, pCAT528, and
pCAT266 all contain the CRE-like element (at -252), while
construct pCAT226 does not contain this element. The minimal black
bars represent the control (zero change). As described under
``Experimental Procedures,'' the same amount of protein was
used to measure CAT activity before and after dibutyryl cAMP treatment.
The data shown represent four independent experiments carried out in
duplicate.
Mobility Shift AssayTo investigate further the
possible role of the CRE-like element, we carried out a mobility shift
assay to determine if this element recognizes and binds to CREB or
related proteins. An oligonucleotide corresponding to the region
surrounding the CRE-like element was radiolabeled and tested for its
ability to bind nuclear extracts from PC12 cells. A somatostatin CRE
oligonucleotide known to bind to CREB proteins(26) , was used
as a positive control. We found that the mobility of the putative CRE
element from the Kv3.1 promoter region is retarded in the presence of
PC12 cell nuclear extract to generate a band that is of similar size to
that observed with the somatostatin CRE sequence (Fig. 7A). In both cases, the formation of the bands
could be reduced or eliminated by an excess of the corresponding
nonradioactive oligonucleotides, indicating that binding was specific.
This result suggests that the putative CRE in the Kv3.1 promoter region
binds to nuclear protein(s) in a similar fashion to the somatostatin
CRE. We further found that 10-fold molar excess of the somatostatin CRE
was able to eliminate the protein binding to the Kv3.1 CRE
oligonucleotide, strongly suggesting that the protein that binds to the
Kv3.1 CRE-like element is likely to be CREB protein (Fig. 7B). To test this hypothesis, we used recombinant
CREB protein to conduct a mobility shift analysis and found that
recombinant CREB protein was able to bind to the Kv3.1 CRE
oligonucleotide. This binding could not be competed with CRM, an
oligonucleotide in which the CRE-like sites have been mutated (Fig. 7C), supporting the idea that the Kv3.1 CRE binds
to CREB itself or a closely related protein. Taken together, our
results from transient transfections and gel mobility shift assays
strongly suggest that the CRE-like element at position -252 is
responsible for the cAMP response of the Kv3.1 gene promoter.
Figure 7:
Mobility shift assay showing binding of
nuclear factors in PC12 cells and purified CREB protein to the putative
CRE element. A, lane 1, no nuclear extract; lane
2, somatostatin CRE with nuclear extract from PC12 cells; lane
3, somatostatin CRE with nuclear extract and cold competitor
oligonucleotide; lane 4, Kv3.1 CRE with nuclear extract; lane 5, Kv3.1 CRE with cold competitor oligonucleotide in the
presence of nuclear extract from PC12 cells. B, lane
1, no nuclear extract from PC12 cells; lane 2, Kv3.1 CRE
oligonucleotide with nuclear extract from PC12 cells; lanes 3 and 4, Kv3.1 CRE oligonucleotide with 10-fold and
100-fold molar excess of cold competitor respectively; lane 5,
Kv3.1 CRE oligonucleotide with 10-fold excess of cold somatostatin CRE. C, lane 1, no purified CREB-bzip protein; lane
2, Kv3.1 CRE oligonucleotide with 1 µg of CREB-bzip protein; lane 3, Kv3.1 CRE oligonucleotide with 2 µg of CREB-bzip
protein; lanes 4 and 5, Kv3.1 CRE oligonucleotide
with 100- and 10-fold excess of cold competitor; lane 6, Kv3.1
CRE with 100-fold excess of cold mutant noncompetitor (CRM),
in which two consensus nucleotides in the Kv3.1 CRE were
mutated.
Regulation of the Kv3.1 Promoter by
Ca Besides being regulated by cAMP, levels of
Kv3.1 mRNA have been shown to be regulated by elevation of
intracellular calcium in wild-type and ras-transfected AtT20
cells(18) . Here we report that Kv3.1 promoter activity can be
up-regulated by treatment with the calcium ionophore, ionomycin (5
µM) in PC12 cells. Using the stable PC12 cell line
transfected with pCATE1213 described above, we observed an increase in
CAT activity induced by ionomycin of more than 50% (p <
0.05) (Fig. 5). When both dibutyryl-cAMP and ionomycin
treatments were combined, there was also a marked increase in CAT
activity (p < 0.001), although this was not significantly
different from that of dibutyryl-cAMP alone.To exclude the
possibility that the SV40 enhancer, which is incorporated in the
pCATE1213 vector (see ``Experimental Procedures''),
contributes to the effects of ionomycin effects, we conducted
experiments using pCATE71, which also contains SV40 enhancer but lacks
putative transcriptional factor binding elements. We found that the CAT
activities in cells transfected with pCATE71 were not up-regulated by 5
µM ionomycin (-5.7% ± 0.061, n = 4). These data suggest that the effects of cAMP and
Ca are mediated directly by the Kv3.1 promoter region
from -1213 bp to -71 bp.
DISCUSSION
The Shaw-type K channel, Kv3.1, is expressed
primarily in
neurons(4, 5, 6, 7, 8) ,
and levels of Kv3.1 mRNA can be altered by seizures(18) , as
well as by second messengers(18) . To understand the mechanisms
underlying transcriptional control of the Kv3.1 gene, we have cloned
the promoter region of the Kv3.1 K channel gene. We
find that the Kv3.1 gene contains two principal transcription start
sites and that the proximal promoter region is extremely GC-rich. The
essential promoter activity of the Kv3.1 gene appears to reside in the
region 226 bp upstream of the start sites. When 5.3 kb of the
5`-flanking region was transfected into undifferentiated PC12 cells, a
neuron-like cell line, it produced high transcriptional activity, about
2-3-fold greater than that of the SV40 promoter. In contrast,
this fragment was essentially inactive in NIH3T3 fibroblast cells,
indicating that the 5` regulatory region plays a crucial role in the
tissue-specific expression of this gene. Similar neuronal-restrictive
promoter activity has been previously demonstrated for the
neuron-specific rat brain type II sodium channel(30) . Within
this region, a silencing element was found to be responsible for
restricting the expression of this gene to neurons(31) . This
neural restrictive silencing element has also been shown to be present
in other neuronal genes, like the SCG10 gene (32, 33) and the human synapsin I gene(34) .
Interestingly, we have found an element in the Kv3.1 5`-flanking region
from -743 to -717 bp bearing 75% identity to the NRSE in
the SCG10 gene. As we deleted the Kv3.1 5`-flanking region from
-1213 to -528, promoter activity increased, suggesting this
NRSE-like element may also play a silencing role here, although more
detailed study will be needed to confirm this hypothesis. A CRE-like
element was found at position -252, 5` to the five putative Sp-1
binding sites. This element is known to mediate the response of
transcription rate to an elevated level of cAMP through CREB. When
phosphorylated by either the cAMP-dependent protein kinase or by a
calcium/calmodulin-dependent protein kinase, the CREB protein binds to
CRE elements enhancing transcription. Further upstream of the CRE-like
element, there exist two consensus Ap-1 elements, which may be
activated by products of immediate early genes. Previous studies have
shown that, besides being regulated by seizure activity(18) ,
the expression levels of the Kv3.1 gene can also be regulated by
extrinsic factors. Studies in the AtT20 cell line have shown that basic
fibroblast growth factor, Ca , depolarization, and
cAMP can regulate the level of Kv3.1 transcripts (18) . In
undifferentiated PC12 cells, we have also shown that cAMP can
up-regulate the level of Kv3.1 transcripts. Our findings that cAMP and
Ca can also enhance Kv3.1 promoter activity suggest
that the regulatory elements in the Kv3.1 gene may be responsible for
regulating Kv3.1 expression. In particular, our studies strongly
suggest that the CRE-like element at -252 mediates the response
of the Kv3.1 gene to elevations of cyclic AMP levels, since we found
that deletion of the CRE-like element eliminated the response of the
promoter to the cAMP analog. Moreover, an oligonucleotide with the
Kv3.1 CRE sequence binds a nuclear protein to generate a band that
matches that obtained with a somatostatin CRE oligonucleotide, which is
known to bind the CREB protein. Using recombinant CREB protein, we have
further demonstrated that the protein that binds to the Kv3.1 CRE
oligonucleotide is probably CREB itself or a closely related protein. Both in situ hybridization and immunocytochemistry studies
have indicated that the Kv3.1 gene is highly enriched in neurons along
auditory pathways, which are capable of firing action potentials at
high frequencies(5, 7, 8) . It has been
suggested that the presence of a channel with the biophysical
characteristics of the Kv3.1 channel allows neurons to generate trains
of action potentials that follow high frequency synaptic stimulation
with little adaptation(16, 17) , and in the case of
neurons in auditory brainstem nuclei, aids in the precise temporal
locking of the phase of action potentials to the phase of auditory
inputs(17) . The finding that the activity of the Kv3.1
promoter is strongly enhanced by a cAMP analog suggests that
neurotransmitters or hormones that elevate cAMP levels may produce
changes in the excitability of neurons that express this channel.
FOOTNOTES
- *
- This work was supported by National Institute of
Health Grant DC-01919 and a grant from the Robert Leet & Clara
Guthrie Patterson Trust (to L. K. K.). The costs of publication of this
article were defrayed in part by the payment of page charges. This
article must therefore by hereby marked
``advertisement'' in accordance with 18 U.S.C.
Section 1734 solely to indicate this fact.
The nucleotide
sequence(s) reported in this paper has been submitted to the
GenBank(TM)/EMBL Data Bank with accession number(s)
U44682[GenBank].
- §
- Present address: Dept. of Neurobiology,
Rutgers, The State University of New Jersey, Center for Molecular and
Behavior Neuroscience, 197 University Ave., Newark, NJ 07102.
- ¶
- To whom correspondence should be addressed:
Dept. of Pharmacology, Yale University School of Medicine, 333 Cedar
St., New Haven, CT 06510. Tel.: 203-785-4500; Fax: 203-785-7670.
- (
) - The abbreviations used are: bp, base pair(s);
kb, kilobase pair(s); CAT, chloramphenicol acetyltransferase; CRE,
cAMP/calcium response element; CREB, CRE binding protein; NRSE, neural
restrictive silencing element.
- (
) - L. Gan, T. M.
Perney, and L. K. Kaczmarek, unpublished results.
ACKNOWLEDGEMENTS
We thank Dr. Benjamin White for valuable discussions.
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